Rmu_sc0006037.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006037.1
OG0002284
Physical Location & Seq
Reverse (-)
5 .. 910
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006037.1_g000001.1.cds

Sequence Viewer

Length: 906 bp
atgattgtcgaggcggccaaagtgcggaaacagtctgttgatccgcaaacgagggagataacgacggcggaagaagcacagatcttgaaggctccgctacactcgaaccgcgccaatctaaagaagaagaaagcagggaacgaaggaaaaaatgtggtaagagagagtgagcaagaggatgaggaggatacggggtttgccttggaggtatccgctgacaagtcacaagagaaggtgacaactgttgtcggggaagcaggtataacggagggtgaaggtgagagggagaggaggatgaaagcaggggccgacatcagagggtcaaaacatgtcggtccaaggactgttggtggtaccggtagggatgaaacagcaggggggtccggcgtaccacagaagaggaagattgtcgcttctacccttccatcagattcctctaagaagatgaaggttggagagaggaaagtggcggagaaacatgttgcaattggccatagagatgtcggaggaaaatttgtctccgacaatcctgtcatatgcttagtgcaaagtgcacccgccaatcaacaggccttcccacacaaggtctgcgagcgtcttggctttggttgtgactcgagggttcctcgtccagcggcgtcgtcaaagctggagaaatccctggatctgattttgaagggtgcccacgagctttaccttcaccagggttcagcgggtgagcgtaaaatgaaagaagaacttctgcaggcacaacgtgatttggcggctgagagggagaagaataaagccaccgctgaggacattgctaaacttgacagtgcgcttctcgacgtcaaagaaaagttcaagcgtgccttggataagaccatcgccgatactgccacgattgccaaccttaatgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

32.53

Weight (kDa)

9.05

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 530
AatII GACGTC 1 cut(s) 834
Acc36I ACCTGC 1 cut(s) 248
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 2 cut(s) 353, 680
AccII CGCG 1 cut(s) 111
AclWI GGATC 2 cut(s) 35, 672
AcoI YGGCCR 2 cut(s) 15, 490
AcsI RAATTY 1 cut(s) 512
AcyI GRCGYC 2 cut(s) 638, 831
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 2 cut(s) 355, 390
AfiI CCNNNNNNNGG 3 cut(s) 24, 583, 703
AflIII ACRYGT 2 cut(s) 328, 478
AgeI ACCGGT 1 cut(s) 356
AgsI TTSAA 3 cut(s) 88, 676, 847
AjnI CCWGG 2 cut(s) 660, 702
AluBI AGCT 2 cut(s) 649, 691
AluI AGCT 2 cut(s) 649, 691
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 1 cut(s) 523
Alw44I GTGCAC 1 cut(s) 552
AlwI GGATC 2 cut(s) 35, 672
Ama87I CYCGRG 1 cut(s) 616
AoxI GGCC 4 cut(s) 15, 306, 490, 570
ApaLI GTGCAC 1 cut(s) 552
ApoI RAATTY 1 cut(s) 512
AsiGI ACCGGT 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 738
Asp718I GGTACC 1 cut(s) 353
AspLEI GCGC 2 cut(s) 113, 823
AspS9I GGNCC 3 cut(s) 306, 335, 381
AsuHPI GGTGA 5 cut(s) 247, 284, 290, 692, 728
AvaI CYCGRG 1 cut(s) 616
AvaII GGWCC 2 cut(s) 335, 381
BaeGI GKGCMC 2 cut(s) 556, 685
BalI TGGCCA 1 cut(s) 492
BanI GGYRCC 2 cut(s) 353, 680
BauI CACGAG 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 556
BbvCI CCTCAGC 1 cut(s) 795
BccI CCATC 2 cut(s) 433, 875
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 2 cut(s) 662, 704
BciVI GTATCC 2 cut(s) 181, 220
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 1 cut(s) 904
BfmI CTRYAG 1 cut(s) 743
BfuAI ACCTGC 1 cut(s) 248
BfuI GTATCC 2 cut(s) 181, 220
BglII AGATCT 1 cut(s) 81
BisI GCNGC 3 cut(s) 15, 636, 765
BlsI GCNGC 3 cut(s) 16, 637, 766
Bme1390I CCNGG 2 cut(s) 662, 704
Bme18I GGWCC 2 cut(s) 335, 381
BmeT110I CYCGRG 1 cut(s) 616
BmgT120I GGNCC 3 cut(s) 306, 335, 381
BmiI GGNNCC 6 cut(s) 93, 307, 355, 382, 624, 682
BmrFI CCNGG 2 cut(s) 662, 704
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpmI CTGGAG 1 cut(s) 671
Bpu10I CCTNAGC 1 cut(s) 795
BsaHI GRCGYC 2 cut(s) 638, 831
BsaJI CCNNGG 5 cut(s) 201, 338, 660, 703, 855
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 583, 703
Bse118I RCCGGY 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 801
BseBI CCWGG 2 cut(s) 662, 704
BseDI CCNNGG 5 cut(s) 201, 338, 660, 703, 855
BseGI GGATG 3 cut(s) 184, 300, 370
BseLI CCNNNNNNNGG 3 cut(s) 24, 583, 703
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 2 cut(s) 759, 786
BseRI GAGGAG 2 cut(s) 197, 304
BseSI GKGCMC 2 cut(s) 556, 685
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 4 cut(s) 17, 308, 492, 572
BshNI GGYRCC 2 cut(s) 353, 680
BshTI ACCGGT 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 556
BsiHKCI CYCGRG 1 cut(s) 616
BsiSI CCGG 2 cut(s) 357, 384
BslI CCNNNNNNNGG 3 cut(s) 24, 583, 703
BsmAI GTCTC 1 cut(s) 523
BsnI GGCC 4 cut(s) 17, 308, 492, 572
BsoBI CYCGRG 1 cut(s) 616
Bsp1286I GDGCHC 2 cut(s) 556, 685
Bsp143I GATC 3 cut(s) 40, 81, 664
BspANI GGCC 4 cut(s) 17, 308, 492, 572
BspCNI CTCAG 2 cut(s) 760, 787
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 6 cut(s) 93, 307, 355, 382, 624, 682
BspMAI CTGCAG 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 2 cut(s) 35, 672
BspT107I GGYRCC 2 cut(s) 353, 680
BsrDI GCAATG 1 cut(s) 801
BsrFI RCCGGY 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 5 cut(s) 201, 338, 660, 703, 855
BssMI GATC 3 cut(s) 40, 81, 664
BssNI GRCGYC 2 cut(s) 638, 831
BssSI CACGAG 1 cut(s) 686
BssT1I CCWWGG 3 cut(s) 201, 338, 855
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 2 cut(s) 662, 704
Bst4CI ACNGT 4 cut(s) 33, 244, 346, 818
Bst6I CTCTTC 1 cut(s) 392
BstACI GRCGYC 2 cut(s) 638, 831
BstC8I GCNNGC 3 cut(s) 593, 747, 852
BstDEI CTNAG 4 cut(s) 438, 541, 768, 795
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 3 cut(s) 184, 300, 370
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 2 cut(s) 113, 823
BstKTI GATC 3 cut(s) 43, 84, 667
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 3 cut(s) 40, 81, 664
BstMWI GCNNNNNNNGC 3 cut(s) 74, 878, 887
BstNI CCWGG 2 cut(s) 662, 704
BstNSI RCATGY 2 cut(s) 332, 482
BstSCI CCNGG 2 cut(s) 660, 702
BstSFI CTRYAG 1 cut(s) 743
BstSLI GKGCMC 2 cut(s) 556, 685
BstUI CGCG 1 cut(s) 111
BstX2I RGATCY 2 cut(s) 81, 664
BstYI RGATCY 2 cut(s) 81, 664
BsuI GTATCC 2 cut(s) 181, 220
BsuRI GGCC 4 cut(s) 17, 308, 492, 572
BtgZI GCGATG 1 cut(s) 853
BtsCI GGATG 3 cut(s) 184, 300, 370
BtsIMutI CAGTG 1 cut(s) 823
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 3 cut(s) 593, 747, 852
CfoI GCGC 2 cut(s) 113, 823
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 306, 335, 381
CseI GACGC 2 cut(s) 584, 627
Csp6I GTAC 2 cut(s) 354, 389
CspAI ACCGGT 1 cut(s) 356
CviAII CATG 2 cut(s) 329, 479
CviQI GTAC 2 cut(s) 354, 389
DdeI CTNAG 4 cut(s) 438, 541, 768, 795
DpnI GATC 3 cut(s) 42, 83, 666
DpnII GATC 3 cut(s) 40, 81, 664
DraIII CACNNNGTG 1 cut(s) 755
DrdI GACNNNNNNGTC 1 cut(s) 530
DseDI GACNNNNNNGTC 1 cut(s) 530
EaeI YGGCCR 2 cut(s) 15, 490
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
EciI GGCGGA 2 cut(s) 83, 485
Eco130I CCWWGG 3 cut(s) 201, 338, 855
Eco147I AGGCCT 1 cut(s) 572
Eco47I GGWCC 2 cut(s) 335, 381
Eco88I CYCGRG 1 cut(s) 616
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoRII CCWGG 2 cut(s) 660, 702
EcoT14I CCWWGG 3 cut(s) 201, 338, 855
ErhI CCWWGG 3 cut(s) 201, 338, 855
FaeI CATG 2 cut(s) 332, 482
FaiI YATR 6 cut(s) 263, 330, 480, 495, 536, 538
FalI AAGNNNNNCTT 4 cut(s) 723, 755, 839, 871
FatI CATG 2 cut(s) 328, 478
FauI CCCGC 2 cut(s) 565, 706
FauNDI CATATG 1 cut(s) 536
Fnu4HI GCNGC 3 cut(s) 15, 636, 765
FokI GGATG 3 cut(s) 191, 307, 377
Fsp4HI GCNGC 3 cut(s) 15, 636, 765
FspBI CTAG 1 cut(s) 904
GlaI GCGC 2 cut(s) 112, 822
GluI GCNGC 3 cut(s) 15, 636, 765
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 4 cut(s) 17, 308, 492, 572
HapII CCGG 2 cut(s) 357, 384
HgaI GACGC 2 cut(s) 584, 627
HhaI GCGC 2 cut(s) 113, 823
Hin1I GRCGYC 2 cut(s) 638, 831
Hin1II CATG 2 cut(s) 332, 482
Hin6I GCGC 2 cut(s) 111, 821
HinP1I GCGC 2 cut(s) 111, 821
HinfI GANTC 2 cut(s) 431, 614
HpaII CCGG 2 cut(s) 357, 384
HphI GGTGA 5 cut(s) 247, 284, 290, 692, 728
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 5 cut(s) 317, 430, 506, 523, 669
Hpy188III TCNNGA 2 cut(s) 85, 827
Hpy8I GTNNAC 1 cut(s) 554
Hpy99I CGWCG 3 cut(s) 67, 643, 833
HpyAV CCTTC 9 cut(s) 82, 137, 226, 269, 431, 442, 583, 670, 707
HpyCH4III ACNGT 4 cut(s) 33, 244, 346, 818
HpyCH4IV ACGT 2 cut(s) 754, 831
HpyCH4V TGCA 4 cut(s) 485, 547, 554, 745
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 878, 887
HpyF3I CTNAG 4 cut(s) 438, 541, 768, 795
HpySE526I ACGT 2 cut(s) 754, 831
Hsp92I GRCGYC 2 cut(s) 638, 831
Hsp92II CATG 2 cut(s) 332, 482
HspAI GCGC 2 cut(s) 111, 821
KpnI GGTACC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 40, 81, 664
LmnI GCTCC 1 cut(s) 97
MaeI CTAG 1 cut(s) 904
MaeII ACGT 2 cut(s) 754, 831
MaeIII GTNAC 3 cut(s) 222, 235, 611
MalI GATC 3 cut(s) 42, 83, 666
MboI GATC 3 cut(s) 40, 81, 664
MboII GAAGA 8 cut(s) 83, 136, 139, 409, 415, 454, 746, 790
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 2 cut(s) 81, 664
MhlI GDGCHC 2 cut(s) 556, 685
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 2 cut(s) 486, 512
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 3 cut(s) 433, 484, 546
Mox20I TGGCCA 1 cut(s) 492
MroXI GAANNNNTTC 1 cut(s) 738
MscI TGGCCA 1 cut(s) 492
MseI TTAA 1 cut(s) 897
MslI CAYNNNNRTG 1 cut(s) 498
Msp20I TGGCCA 1 cut(s) 492
MspA1I CMGCKG 4 cut(s) 215, 635, 713, 794
MspI CCGG 2 cut(s) 357, 384
MspR9I CCNGG 2 cut(s) 662, 704
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 2 cut(s) 662, 704
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 74, 878, 887
NdeI CATATG 1 cut(s) 536
NdeII GATC 3 cut(s) 40, 81, 664
NlaIII CATG 2 cut(s) 332, 482
NlaIV GGNNCC 6 cut(s) 93, 307, 355, 382, 624, 682
NmuCI GTSAC 3 cut(s) 222, 235, 611
NspI RCATGY 2 cut(s) 332, 482
PaeR7I CTCGAG 1 cut(s) 616
PceI AGGCCT 1 cut(s) 572
PciI ACATGT 2 cut(s) 328, 478
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 1 cut(s) 431
PinAI ACCGGT 1 cut(s) 356
PkrI GCNGC 3 cut(s) 16, 637, 766
PleI GAGTC 1 cut(s) 608
PpsI GAGTC 1 cut(s) 608
PscI ACATGT 2 cut(s) 328, 478
Psp6I CCWGG 2 cut(s) 660, 702
PspGI CCWGG 2 cut(s) 660, 702
PspN4I GGNNCC 6 cut(s) 93, 307, 355, 382, 624, 682
PspPI GGNCC 3 cut(s) 306, 335, 381
PspXI VCTCGAGB 1 cut(s) 616
PstI CTGCAG 1 cut(s) 747
PsuI RGATCY 2 cut(s) 81, 664
RsaI GTAC 2 cut(s) 355, 390
RsaNI GTAC 2 cut(s) 354, 389
RseI CAYNNNNRTG 1 cut(s) 498
SaqAI TTAA 1 cut(s) 897
SatI GCNGC 3 cut(s) 15, 636, 765
Sau3AI GATC 3 cut(s) 40, 81, 664
Sau96I GGNCC 3 cut(s) 306, 335, 381
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 2 cut(s) 662, 704
SduI GDGCHC 2 cut(s) 556, 685
SfcI CTRYAG 1 cut(s) 743
Sfr274I CTCGAG 1 cut(s) 616
SinI GGWCC 2 cut(s) 335, 381
SlaI CTCGAG 1 cut(s) 616
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
Sse9I AATT 2 cut(s) 486, 512
SseBI AGGCCT 1 cut(s) 572
SspMI CTAG 1 cut(s) 904
StuI AGGCCT 1 cut(s) 572
StyD4I CCNGG 2 cut(s) 660, 702
StyI CCWWGG 3 cut(s) 201, 338, 855
TaaI ACNGT 4 cut(s) 33, 244, 346, 818
TaiI ACGT 2 cut(s) 757, 834
TaqI TCGA 4 cut(s) 9, 104, 617, 828
TaqII GACCGA 1 cut(s) 323
TasI AATT 2 cut(s) 486, 512
TauI GCSGC 3 cut(s) 17, 638, 767
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 1 cut(s) 897
Tru9I TTAA 1 cut(s) 897
TscAI CASTG 1 cut(s) 823
TseFI GTSAC 3 cut(s) 222, 235, 611
Tsp45I GTSAC 3 cut(s) 222, 235, 611
TspDTI ATGAA 4 cut(s) 311, 381, 461, 743
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 1 cut(s) 823
VneI GTGCAC 1 cut(s) 552
VpaK11BI GGWCC 2 cut(s) 335, 381
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 1 cut(s) 512
XceI RCATGY 2 cut(s) 332, 482
XhoI CTCGAG 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 1 cut(s) 904
ZraI GACGTC 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.