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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1586 |
| Acc65I | GGTACC | 1 cut(s) | 1255 |
| AccB1I | GGYRCC | 3 cut(s) | 520, 1255, 1736 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 783, 1765 |
| AccI | GTMKAC | 1 cut(s) | 733 |
| AccII | CGCG | 1 cut(s) | 1398 |
| AccIII | TCCGGA | 1 cut(s) | 305 |
| AclWI | GGATC | 5 cut(s) | 1079, 1431, 1444, 1481, 1963 |
| AcoI | YGGCCR | 5 cut(s) | 1059, 1546, 1685, 1821, 2056 |
| AcsI | RAATTY | 3 cut(s) | 628, 644, 1568 |
| AcuI | CTGAAG | 5 cut(s) | 681, 848, 1184, 1467, 1994 |
| AcyI | GRCGYC | 2 cut(s) | 252, 1694 |
| AdeI | CACNNNGTG | 3 cut(s) | 514, 798, 1811 |
| AfaI | GTAC | 3 cut(s) | 970, 1257, 1402 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 624, 783, 1433, 1592, 1765, 1851, 1978 |
| AflIII | ACRYGT | 3 cut(s) | 42, 591, 1375 |
| AgsI | TTSAA | 6 cut(s) | 119, 562, 845, 1386, 1732, 1903 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2033 |
| AjiI | CACGTC | 1 cut(s) | 43 |
| AjnI | CCWGG | 5 cut(s) | 209, 736, 1248, 1716, 1758 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 590, 622 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 891, 923 |
| AluBI | AGCT | 9 cut(s) | 8, 743, 891, 1349, 1705, 1747, 1867, 1963, 2063 |
| AluI | AGCT | 9 cut(s) | 8, 743, 891, 1349, 1705, 1747, 1867, 1963, 2063 |
| Alw21I | GWGCWC | 6 cut(s) | 745, 870, 885, 1612, 1749, 1879 |
| Alw26I | GTCTC | 3 cut(s) | 259, 817, 1579 |
| Alw44I | GTGCAC | 2 cut(s) | 866, 1608 |
| AlwI | GGATC | 5 cut(s) | 1079, 1431, 1444, 1481, 1963 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 659 |
| Ama87I | CYCGRG | 1 cut(s) | 948 |
| Aor13HI | TCCGGA | 1 cut(s) | 305 |
| AoxI | GGCC | 8 cut(s) | 789, 1059, 1353, 1546, 1626, 1685, 1821, 2056 |
| ApaLI | GTGCAC | 2 cut(s) | 866, 1608 |
| ApeKI | GCWGC | 3 cut(s) | 550, 891, 1133 |
| ApoI | RAATTY | 3 cut(s) | 628, 644, 1568 |
| AseI | ATTAAT | 1 cut(s) | 1953 |
| Asp718I | GGTACC | 1 cut(s) | 1255 |
| AspLEI | GCGC | 1 cut(s) | 1157 |
| AspS9I | GGNCC | 4 cut(s) | 92, 308, 789, 1353 |
| AsuHPI | GGTGA | 3 cut(s) | 153, 1337, 1748 |
| AvaI | CYCGRG | 1 cut(s) | 948 |
| AvaII | GGWCC | 2 cut(s) | 92, 308 |
| BaeGI | GKGCMC | 3 cut(s) | 870, 1612, 1741 |
| BalI | TGGCCA | 2 cut(s) | 1548, 2058 |
| BamHI | GGATCC | 1 cut(s) | 1436 |
| BanI | GGYRCC | 3 cut(s) | 520, 1255, 1736 |
| BanII | GRGCYC | 2 cut(s) | 745, 1749 |
| BauI | CACGAG | 1 cut(s) | 322 |
| BbsI | GAAGAC | 1 cut(s) | 1184 |
| Bbv12I | GWGCWC | 6 cut(s) | 745, 870, 885, 1612, 1749, 1879 |
| BbvI | GCAGC | 3 cut(s) | 537, 878, 1120 |
| BccI | CCATC | 3 cut(s) | 1000, 1931, 2048 |
| BceAI | ACGGC | 1 cut(s) | 1125 |
| BciT130I | CCWGG | 5 cut(s) | 211, 738, 1250, 1718, 1760 |
| BcoDI | GTCTC | 3 cut(s) | 259, 817, 1579 |
| BfaI | CTAG | 2 cut(s) | 128, 896 |
| BfmI | CTRYAG | 1 cut(s) | 102 |
| BfoI | RGCGCY | 1 cut(s) | 1158 |
| BisI | GCNGC | 9 cut(s) | 483, 524, 551, 892, 1059, 1134, 1542, 1692, 1821 |
| BlpI | GCTNAGC | 1 cut(s) | 1959 |
| BlsI | GCNGC | 9 cut(s) | 484, 525, 552, 893, 1060, 1135, 1543, 1693, 1822 |
| Bme1390I | CCNGG | 5 cut(s) | 211, 738, 1250, 1718, 1760 |
| Bme18I | GGWCC | 2 cut(s) | 92, 308 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2033 |
| BmeT110I | CYCGRG | 1 cut(s) | 948 |
| BmgBI | CACGTC | 1 cut(s) | 43 |
| BmgT120I | GGNCC | 4 cut(s) | 92, 308, 789, 1353 |
| BmiI | GGNNCC | 6 cut(s) | 522, 954, 1257, 1354, 1438, 1738 |
| BmrFI | CCNGG | 5 cut(s) | 211, 738, 1250, 1718, 1760 |
| BmsI | GCATC | 3 cut(s) | 179, 915, 1985 |
| BpiI | GAAGAC | 1 cut(s) | 1184 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1666, 1698 |
| BpmI | CTGGAG | 4 cut(s) | 128, 759, 1271, 1727 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1959 |
| BpuEI | CTTGAG | 1 cut(s) | 7 |
| Bsa29I | ATCGAT | 1 cut(s) | 15 |
| BsaAI | YACGTR | 1 cut(s) | 176 |
| BsaHI | GRCGYC | 2 cut(s) | 252, 1694 |
| BsaJI | CCNNGG | 8 cut(s) | 210, 1062, 1107, 1248, 1314, 1654, 1682, 1716 |
| BsaWI | WCCGGW | 1 cut(s) | 305 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 504, 534 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 624, 783, 1433, 1592, 1765, 1851, 1978 |
| Bse1I | ACTGG | 3 cut(s) | 1408, 1427, 2033 |
| Bse3DI | GCAATG | 2 cut(s) | 202, 1857 |
| BseAI | TCCGGA | 1 cut(s) | 305 |
| BseBI | CCWGG | 5 cut(s) | 211, 738, 1250, 1718, 1760 |
| BseCI | ATCGAT | 1 cut(s) | 15 |
| BseDI | CCNNGG | 8 cut(s) | 210, 1062, 1107, 1248, 1314, 1654, 1682, 1716 |
| BseGI | GGATG | 3 cut(s) | 295, 906, 1417 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 624, 783, 1433, 1592, 1765, 1851, 1978 |
| BseMI | GCAATG | 2 cut(s) | 202, 1857 |
| BseMII | CTCAG | 1 cut(s) | 1950 |
| BseNI | ACTGG | 3 cut(s) | 1408, 1427, 2033 |
| BseRI | GAGGAG | 3 cut(s) | 230, 1223, 1685 |
| BseSI | GKGCMC | 3 cut(s) | 870, 1612, 1741 |
| BseX3I | CGGCCG | 1 cut(s) | 1821 |
| BseXI | GCAGC | 3 cut(s) | 537, 878, 1120 |
| BseYI | CCCAGC | 2 cut(s) | 1349, 1850 |
| BsgI | GTGCAG | 3 cut(s) | 398, 1088, 1619 |
| Bsh1236I | CGCG | 1 cut(s) | 1398 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1824 |
| BshFI | GGCC | 8 cut(s) | 791, 1061, 1355, 1548, 1628, 1687, 1823, 2058 |
| BshNI | GGYRCC | 3 cut(s) | 520, 1255, 1736 |
| BshVI | ATCGAT | 1 cut(s) | 15 |
| BsiEI | CGRYCG | 1 cut(s) | 1824 |
| BsiHKAI | GWGCWC | 6 cut(s) | 745, 870, 885, 1612, 1749, 1879 |
| BsiHKCI | CYCGRG | 1 cut(s) | 948 |
| BsiSI | CCGG | 1 cut(s) | 306 |
| BsiWI | CGTACG | 1 cut(s) | 968 |
| BslFI | GGGAC | 1 cut(s) | 1868 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 624, 783, 1433, 1592, 1765, 1851, 1978 |
| BsmAI | GTCTC | 3 cut(s) | 259, 817, 1579 |
| BsmBI | CGTCTC | 1 cut(s) | 259 |
| BsmFI | GGGAC | 1 cut(s) | 1868 |
| BsnI | GGCC | 8 cut(s) | 791, 1061, 1355, 1548, 1628, 1687, 1823, 2058 |
| BsoBI | CYCGRG | 1 cut(s) | 948 |
| Bsp1286I | GDGCHC | 7 cut(s) | 745, 870, 885, 1612, 1741, 1749, 1879 |
| Bsp13I | TCCGGA | 1 cut(s) | 305 |
| Bsp143I | GATC | 4 cut(s) | 1084, 1436, 1486, 1968 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1959 |
| BspANI | GGCC | 8 cut(s) | 791, 1061, 1355, 1548, 1628, 1687, 1823, 2058 |
| BspCNI | CTCAG | 1 cut(s) | 1951 |
| BspDI | ATCGAT | 1 cut(s) | 15 |
| BspEI | TCCGGA | 1 cut(s) | 305 |
| BspFNI | CGCG | 1 cut(s) | 1398 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 6 cut(s) | 522, 954, 1257, 1354, 1438, 1738 |
| BspPI | GGATC | 5 cut(s) | 1079, 1431, 1444, 1481, 1963 |
| BspQI | GCTCTTC | 1 cut(s) | 1884 |
| BspT107I | GGYRCC | 3 cut(s) | 520, 1255, 1736 |
| BsrDI | GCAATG | 2 cut(s) | 202, 1857 |
| BsrI | ACTGG | 3 cut(s) | 1408, 1427, 2033 |
| BssECI | CCNNGG | 8 cut(s) | 210, 1062, 1107, 1248, 1314, 1654, 1682, 1716 |
| BssMI | GATC | 4 cut(s) | 1084, 1436, 1486, 1968 |
| BssNI | GRCGYC | 2 cut(s) | 252, 1694 |
| BssSI | CACGAG | 1 cut(s) | 322 |
| BssT1I | CCWWGG | 2 cut(s) | 1062, 1654 |
| Bst2BI | CACGAG | 1 cut(s) | 322 |
| Bst2UI | CCWGG | 5 cut(s) | 211, 738, 1250, 1718, 1760 |
| Bst4CI | ACNGT | 9 cut(s) | 341, 438, 655, 718, 796, 1081, 1315, 1477, 1874 |
| Bst6I | CTCTTC | 3 cut(s) | 1448, 1884, 2044 |
| BstACI | GRCGYC | 2 cut(s) | 252, 1694 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 547 |
| BstBAI | YACGTR | 1 cut(s) | 176 |
| BstC8I | GCNNGC | 7 cut(s) | 413, 539, 789, 1546, 1689, 1803, 1965 |
| BstDEI | CTNAG | 1 cut(s) | 1959 |
| BstDSI | CCRYGG | 2 cut(s) | 1107, 1314 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1590, 1976 |
| BstF5I | GGATG | 3 cut(s) | 295, 906, 1417 |
| BstFNI | CGCG | 1 cut(s) | 1398 |
| BstH2I | RGCGCY | 1 cut(s) | 1158 |
| BstHHI | GCGC | 1 cut(s) | 1157 |
| BstKTI | GATC | 4 cut(s) | 1087, 1439, 1489, 1971 |
| BstMAI | GTCTC | 3 cut(s) | 259, 817, 1579 |
| BstMBI | GATC | 4 cut(s) | 1084, 1436, 1486, 1968 |
| BstMCI | CGRYCG | 1 cut(s) | 1824 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 547, 617, 1118, 1807, 1934, 1943, 1964 |
| BstNI | CCWGG | 5 cut(s) | 211, 738, 1250, 1718, 1760 |
| BstNSI | RCATGY | 4 cut(s) | 595, 1379, 1523, 1538 |
| BstSCI | CCNGG | 5 cut(s) | 209, 736, 1248, 1716, 1758 |
| BstSFI | CTRYAG | 1 cut(s) | 102 |
| BstSLI | GKGCMC | 3 cut(s) | 870, 1612, 1741 |
| BstUI | CGCG | 1 cut(s) | 1398 |
| BstV1I | GCAGC | 3 cut(s) | 537, 878, 1120 |
| BstV2I | GAAGAC | 1 cut(s) | 1184 |
| BstX2I | RGATCY | 2 cut(s) | 1436, 1486 |
| BstYI | RGATCY | 2 cut(s) | 1436, 1486 |
| BstZI | CGGCCG | 1 cut(s) | 1821 |
| Bsu15I | ATCGAT | 1 cut(s) | 15 |
| BsuRI | GGCC | 8 cut(s) | 791, 1061, 1355, 1548, 1628, 1687, 1823, 2058 |
| BsuTUI | ATCGAT | 1 cut(s) | 15 |
| BtgI | CCRYGG | 2 cut(s) | 1107, 1314 |
| BtgZI | GCGATG | 2 cut(s) | 1019, 1909 |
| BtrI | CACGTC | 1 cut(s) | 43 |
| BtsCI | GGATG | 3 cut(s) | 295, 906, 1417 |
| BtsI | GCAGTG | 1 cut(s) | 1845 |
| BtsIMutI | CAGTG | 4 cut(s) | 660, 792, 1651, 1845 |
| Cac8I | GCNNGC | 7 cut(s) | 413, 539, 789, 1546, 1689, 1803, 1965 |
| CaiI | CAGNNNCTG | 1 cut(s) | 659 |
| CciI | TCATGA | 1 cut(s) | 490 |
| CfoI | GCGC | 1 cut(s) | 1157 |
| Cfr13I | GGNCC | 4 cut(s) | 92, 308, 789, 1353 |
| ClaI | ATCGAT | 1 cut(s) | 15 |
| CseI | GACGC | 2 cut(s) | 241, 1683 |
| Csp6I | GTAC | 3 cut(s) | 969, 1256, 1401 |
| CviAII | CATG | 8 cut(s) | 491, 554, 592, 783, 1376, 1520, 1535, 1742 |
| CviQI | GTAC | 3 cut(s) | 969, 1256, 1401 |
| DdeI | CTNAG | 1 cut(s) | 1959 |
| DpnI | GATC | 4 cut(s) | 1086, 1438, 1488, 1970 |
| DpnII | GATC | 4 cut(s) | 1084, 1436, 1486, 1968 |
| DraIII | CACNNNGTG | 3 cut(s) | 514, 798, 1811 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1586 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2033 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1586 |
| EaeI | YGGCCR | 5 cut(s) | 1059, 1546, 1685, 1821, 2056 |
| EagI | CGGCCG | 1 cut(s) | 1821 |
| Eam1104I | CTCTTC | 3 cut(s) | 1448, 1884, 2044 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2033 |
| EarI | CTCTTC | 3 cut(s) | 1448, 1884, 2044 |
| EciI | GGCGGA | 4 cut(s) | 1220, 1541, 1784, 2040 |
| Ecl136II | GAGCTC | 2 cut(s) | 743, 1747 |
| EclXI | CGGCCG | 1 cut(s) | 1821 |
| Eco130I | CCWWGG | 2 cut(s) | 1062, 1654 |
| Eco147I | AGGCCT | 1 cut(s) | 1628 |
| Eco24I | GRGCYC | 2 cut(s) | 745, 1749 |
| Eco32I | GATATC | 1 cut(s) | 19 |
| Eco47I | GGWCC | 2 cut(s) | 92, 308 |
| Eco52I | CGGCCG | 1 cut(s) | 1821 |
| Eco53kI | GAGCTC | 2 cut(s) | 743, 1747 |
| Eco57I | CTGAAG | 5 cut(s) | 681, 848, 1184, 1467, 1994 |
| Eco88I | CYCGRG | 1 cut(s) | 948 |
| EcoICRI | GAGCTC | 2 cut(s) | 743, 1747 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1590, 1976 |
| EcoRII | CCWGG | 5 cut(s) | 209, 736, 1248, 1716, 1758 |
| EcoRV | GATATC | 1 cut(s) | 19 |
| EcoT14I | CCWWGG | 2 cut(s) | 1062, 1654 |
| EcoT38I | GRGCYC | 2 cut(s) | 745, 1749 |
| ErhI | CCWWGG | 2 cut(s) | 1062, 1654 |
| Esp3I | CGTCTC | 1 cut(s) | 259 |
| FaeI | CATG | 8 cut(s) | 494, 557, 595, 786, 1379, 1523, 1538, 1745 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1779, 1811 |
| FaqI | GGGAC | 1 cut(s) | 1868 |
| FatI | CATG | 8 cut(s) | 490, 553, 591, 782, 1375, 1519, 1534, 1741 |
| FauI | CCCGC | 5 cut(s) | 780, 846, 1105, 1267, 1621 |
| FblI | GTMKAC | 1 cut(s) | 733 |
| Fnu4HI | GCNGC | 9 cut(s) | 483, 524, 551, 892, 1059, 1134, 1542, 1692, 1821 |
| FokI | GGATG | 3 cut(s) | 302, 893, 1424 |
| FriOI | GRGCYC | 2 cut(s) | 745, 1749 |
| Fsp4HI | GCNGC | 9 cut(s) | 483, 524, 551, 892, 1059, 1134, 1542, 1692, 1821 |
| FspBI | CTAG | 2 cut(s) | 128, 896 |
| GlaI | GCGC | 1 cut(s) | 1156 |
| GluI | GCNGC | 9 cut(s) | 483, 524, 551, 892, 1059, 1134, 1542, 1692, 1821 |
| GsaI | CCCAGC | 2 cut(s) | 1353, 1854 |
| GsuI | CTGGAG | 4 cut(s) | 128, 759, 1271, 1727 |
| HaeII | RGCGCY | 1 cut(s) | 1158 |
| HaeIII | GGCC | 8 cut(s) | 791, 1061, 1355, 1548, 1628, 1687, 1823, 2058 |
| HapII | CCGG | 1 cut(s) | 306 |
| HgaI | GACGC | 2 cut(s) | 241, 1683 |
| HhaI | GCGC | 1 cut(s) | 1157 |
| Hin1I | GRCGYC | 2 cut(s) | 252, 1694 |
| Hin1II | CATG | 8 cut(s) | 494, 557, 595, 786, 1379, 1523, 1538, 1745 |
| Hin6I | GCGC | 1 cut(s) | 1155 |
| HinP1I | GCGC | 1 cut(s) | 1155 |
| HincII | GTYRAC | 4 cut(s) | 684, 734, 834, 1424 |
| HindII | GTYRAC | 4 cut(s) | 684, 734, 834, 1424 |
| HindIII | AAGCTT | 1 cut(s) | 1865 |
| HinfI | GANTC | 5 cut(s) | 35, 80, 770, 946, 964 |
| HpaII | CCGG | 1 cut(s) | 306 |
| HphI | GGTGA | 3 cut(s) | 153, 1337, 1748 |
| Hpy166II | GTNNAC | 8 cut(s) | 684, 734, 834, 868, 1217, 1424, 1610, 1845 |
| Hpy188III | TCNNGA | 8 cut(s) | 145, 258, 306, 491, 755, 950, 1883, 1972 |
| Hpy8I | GTNNAC | 8 cut(s) | 684, 734, 834, 868, 1217, 1424, 1610, 1845 |
| Hpy99I | CGWCG | 3 cut(s) | 64, 735, 1699 |
| HpyCH4III | ACNGT | 9 cut(s) | 341, 438, 655, 718, 796, 1081, 1315, 1477, 1874 |
| HpyCH4IV | ACGT | 2 cut(s) | 42, 175 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 547, 617, 1118, 1807, 1934, 1943, 1964 |
| HpyF3I | CTNAG | 1 cut(s) | 1959 |
| HpySE526I | ACGT | 2 cut(s) | 42, 175 |
| Hsp92I | GRCGYC | 2 cut(s) | 252, 1694 |
| Hsp92II | CATG | 8 cut(s) | 494, 557, 595, 786, 1379, 1523, 1538, 1745 |
| HspAI | GCGC | 1 cut(s) | 1155 |
| Kpn2I | TCCGGA | 1 cut(s) | 305 |
| KpnI | GGTACC | 1 cut(s) | 1259 |
| Kzo9I | GATC | 4 cut(s) | 1084, 1436, 1486, 1968 |
| LguI | GCTCTTC | 1 cut(s) | 1884 |
| LmnI | GCTCC | 4 cut(s) | 740, 880, 952, 1141 |
| Lsp1109I | GCAGC | 3 cut(s) | 537, 878, 1120 |
| LweI | GCATC | 3 cut(s) | 179, 915, 1985 |
| MaeI | CTAG | 2 cut(s) | 128, 896 |
| MaeII | ACGT | 2 cut(s) | 42, 175 |
| MaeIII | GTNAC | 5 cut(s) | 159, 335, 958, 1269, 1811 |
| MalI | GATC | 4 cut(s) | 1086, 1438, 1488, 1970 |
| MboI | GATC | 4 cut(s) | 1084, 1436, 1486, 1968 |
| MfeI | CAATTG | 1 cut(s) | 1287 |
| MflI | RGATCY | 2 cut(s) | 1436, 1486 |
| MhlI | GDGCHC | 7 cut(s) | 745, 870, 885, 1612, 1741, 1749, 1879 |
| MlsI | TGGCCA | 2 cut(s) | 1548, 2058 |
| MluNI | TGGCCA | 2 cut(s) | 1548, 2058 |
| MlyI | GAGTC | 1 cut(s) | 940 |
| MmeI | TCCRAC | 7 cut(s) | 42, 325, 450, 674, 800, 1464, 1489 |
| Mox20I | TGGCCA | 2 cut(s) | 1548, 2058 |
| MroI | TCCGGA | 1 cut(s) | 305 |
| MscI | TGGCCA | 2 cut(s) | 1548, 2058 |
| MseI | TTAA | 5 cut(s) | 54, 720, 996, 1026, 1953 |
| MslI | CAYNNNNRTG | 2 cut(s) | 590, 1554 |
| Msp20I | TGGCCA | 2 cut(s) | 1548, 2058 |
| MspA1I | CMGCKG | 4 cut(s) | 8, 853, 1262, 1691 |
| MspI | CCGG | 1 cut(s) | 306 |
| MspR9I | CCNGG | 5 cut(s) | 211, 738, 1250, 1718, 1760 |
| MunI | CAATTG | 1 cut(s) | 1287 |
| MvaI | CCWGG | 5 cut(s) | 211, 738, 1250, 1718, 1760 |
| MvnI | CGCG | 1 cut(s) | 1398 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 547, 617, 1118, 1807, 1934, 1943, 1964 |
| NdeII | GATC | 4 cut(s) | 1084, 1436, 1486, 1968 |
| NlaIII | CATG | 8 cut(s) | 494, 557, 595, 786, 1379, 1523, 1538, 1745 |
| NlaIV | GGNNCC | 6 cut(s) | 522, 954, 1257, 1354, 1438, 1738 |
| NmeAIII | GCCGAG | 2 cut(s) | 1663, 1849 |
| NmuCI | GTSAC | 4 cut(s) | 159, 335, 1269, 1811 |
| NspI | RCATGY | 4 cut(s) | 595, 1379, 1523, 1538 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PceI | AGGCCT | 1 cut(s) | 1628 |
| PciI | ACATGT | 2 cut(s) | 591, 1375 |
| PciSI | GCTCTTC | 1 cut(s) | 1884 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 44, 968, 1473 |
| PfeI | GAWTC | 4 cut(s) | 35, 80, 770, 964 |
| Pfl23II | CGTACG | 1 cut(s) | 968 |
| PflFI | GACNNNGTC | 1 cut(s) | 341 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 783, 1765 |
| PkrI | GCNGC | 9 cut(s) | 484, 525, 552, 893, 1060, 1135, 1543, 1693, 1822 |
| PleI | GAGTC | 1 cut(s) | 940 |
| PpsI | GAGTC | 1 cut(s) | 940 |
| Ppu21I | YACGTR | 1 cut(s) | 176 |
| PscI | ACATGT | 2 cut(s) | 591, 1375 |
| PshBI | ATTAAT | 1 cut(s) | 1953 |
| Psp124BI | GAGCTC | 2 cut(s) | 745, 1749 |
| Psp6I | CCWGG | 5 cut(s) | 209, 736, 1248, 1716, 1758 |
| PspFI | CCCAGC | 2 cut(s) | 1349, 1850 |
| PspGI | CCWGG | 5 cut(s) | 209, 736, 1248, 1716, 1758 |
| PspLI | CGTACG | 1 cut(s) | 968 |
| PspN4I | GGNNCC | 6 cut(s) | 522, 954, 1257, 1354, 1438, 1738 |
| PspPI | GGNCC | 4 cut(s) | 92, 308, 789, 1353 |
| PstNI | CAGNNNCTG | 1 cut(s) | 659 |
| PsuI | RGATCY | 2 cut(s) | 1436, 1486 |
| PsyI | GACNNNGTC | 1 cut(s) | 341 |
| PvuII | CAGCTG | 1 cut(s) | 8 |
| RsaI | GTAC | 3 cut(s) | 970, 1257, 1402 |
| RsaNI | GTAC | 3 cut(s) | 969, 1256, 1401 |
| RseI | CAYNNNNRTG | 2 cut(s) | 590, 1554 |
| SacI | GAGCTC | 2 cut(s) | 745, 1749 |
| SalI | GTCGAC | 1 cut(s) | 732 |
| SapI | GCTCTTC | 1 cut(s) | 1884 |
| SaqAI | TTAA | 5 cut(s) | 54, 720, 996, 1026, 1953 |
| SatI | GCNGC | 9 cut(s) | 483, 524, 551, 892, 1059, 1134, 1542, 1692, 1821 |
| Sau3AI | GATC | 4 cut(s) | 1084, 1436, 1486, 1968 |
| Sau96I | GGNCC | 4 cut(s) | 92, 308, 789, 1353 |
| SchI | GAGTC | 1 cut(s) | 940 |
| ScrFI | CCNGG | 5 cut(s) | 211, 738, 1250, 1718, 1760 |
| SduI | GDGCHC | 7 cut(s) | 745, 870, 885, 1612, 1741, 1749, 1879 |
| SfaNI | GCATC | 3 cut(s) | 179, 915, 1985 |
| SfcI | CTRYAG | 1 cut(s) | 102 |
| SinI | GGWCC | 2 cut(s) | 92, 308 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 590, 1554 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| SseBI | AGGCCT | 1 cut(s) | 1628 |
| SspMI | CTAG | 2 cut(s) | 128, 896 |
| SstI | GAGCTC | 2 cut(s) | 745, 1749 |
| StuI | AGGCCT | 1 cut(s) | 1628 |
| StyD4I | CCNGG | 5 cut(s) | 209, 736, 1248, 1716, 1758 |
| StyI | CCWWGG | 2 cut(s) | 1062, 1654 |
| TaaI | ACNGT | 9 cut(s) | 341, 438, 655, 718, 796, 1081, 1315, 1477, 1874 |
| TaiI | ACGT | 2 cut(s) | 45, 178 |
| TaqI | TCGA | 5 cut(s) | 15, 635, 733, 1148, 1493 |
| TauI | GCSGC | 6 cut(s) | 485, 526, 1061, 1544, 1694, 1823 |
| TfiI | GAWTC | 4 cut(s) | 35, 80, 770, 964 |
| Tru1I | TTAA | 5 cut(s) | 54, 720, 996, 1026, 1953 |
| Tru9I | TTAA | 5 cut(s) | 54, 720, 996, 1026, 1953 |
| TscAI | CASTG | 4 cut(s) | 660, 799, 1651, 1852 |
| TseFI | GTSAC | 4 cut(s) | 159, 335, 1269, 1811 |
| TseI | GCWGC | 3 cut(s) | 550, 891, 1133 |
| Tsp45I | GTSAC | 4 cut(s) | 159, 335, 1269, 1811 |
| TspDTI | ATGAA | 7 cut(s) | 191, 369, 410, 479, 570, 574, 1517 |
| TspGWI | ACGGA | 2 cut(s) | 147, 525 |
| TspRI | CASTG | 4 cut(s) | 660, 799, 1651, 1852 |
| Tth111I | GACNNNGTC | 1 cut(s) | 341 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 783, 1765 |
| VneI | GTGCAC | 2 cut(s) | 866, 1608 |
| VpaK11BI | GGWCC | 2 cut(s) | 92, 308 |
| VspI | ATTAAT | 1 cut(s) | 1953 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1590, 1976 |
| XapI | RAATTY | 3 cut(s) | 628, 644, 1568 |
| XceI | RCATGY | 4 cut(s) | 595, 1379, 1523, 1538 |
| XmiI | GTMKAC | 1 cut(s) | 733 |
| XspI | CTAG | 2 cut(s) | 128, 896 |