Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003328.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

12144 .. 12696

Gene Structure 553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003328.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 553 bp

agagaagaatgtggcagagaagaatgtggcaataagccacaaggatgatgggttaggtaggtttgtctccgacaaccttgtcatcaggttggtgcaaaatgagcccgctggtcaacaggcctttttgcataaggtgtgtgagggcctggcctttggaggcgaggtgagagtttcccagcaagcagcgacgtcaaagttggaaacgtccctcgacctgattttgaagggtgcctatgatctttatcttttccaaggctcgtcggaggagcgtaagctgaaagaagaacttctgcaagcacaacatgacttggcggcagagagagagaagaacaaggtcaccgagacggacattgccaagcttgacggtgcccttctcgacatgaaggagaagttcaagcgtgcggtcgataaaagtatcgccgacaccaccaccattgccaacctgaatacagagttggcggtcctaaaaaagaagaaggctaagaaagaagataccatctctcaattgcaggagaccgttgccgccaaagagaaagagttggcagactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.29

Weight (kDa)

5.76

Isoelectric Point (pI)

27.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	78
AatII	GACGTC	1 cut(s)	192
AccB1I	GGYRCC	2 cut(s)	228, 366
AciI	CCGC	5 cut(s)	106, 312, 402, 459, 523
AcyI	GRCGYC	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	224, 395
AjnI	CCWGG	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AluBI	AGCT	2 cut(s)	275, 359
AluI	AGCT	2 cut(s)	275, 359
Alw26I	GTCTC	3 cut(s)	71, 336, 507
AoxI	GGCC	3 cut(s)	118, 143, 148
ApeKI	GCWGC	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	143, 461
AsuHPI	GGTGA	2 cut(s)	176, 329
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	371
BanI	GGYRCC	2 cut(s)	228, 366
BanII	GRGCYC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	2 cut(s)	42, 504
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	3 cut(s)	71, 336, 507
BfaI	CTAG	1 cut(s)	551
BisI	GCNGC	3 cut(s)	184, 313, 523
BlsI	GCNGC	3 cut(s)	185, 314, 524
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	143, 461
BmiI	GGNNCC	2 cut(s)	230, 368
BmrFI	CCNGG	1 cut(s)	147
BsaBI	GATNNNNATC	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bse3DI	GCAATG	2 cut(s)	349, 433
Bse8I	GATNNNNATC	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	241
BseMI	GCAATG	2 cut(s)	349, 433
BseRI	GAGGAG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	195
BseYI	CCCAGC	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	406
BshFI	GGCC	3 cut(s)	120, 145, 150
BshNI	GGYRCC	2 cut(s)	228, 366
BsiEI	CGRYCG	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	191
BsmAI	GTCTC	3 cut(s)	71, 336, 507
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	120, 145, 150
Bso31I	GGTCTC	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	106, 371
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	5 cut(s)	106, 312, 402, 459, 523
BspANI	GGCC	3 cut(s)	120, 145, 150
BspLI	GGNNCC	2 cut(s)	230, 368
BspT107I	GGYRCC	2 cut(s)	228, 366
BspTNI	GGTCTC	1 cut(s)	507
BsrDI	GCAATG	2 cut(s)	349, 433
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	236
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	366, 518
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	4 cut(s)	106, 181, 295, 400
BstDEI	CTNAG	1 cut(s)	481
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	3 cut(s)	71, 336, 507
BstMBI	GATC	1 cut(s)	236
BstMCI	CGRYCG	1 cut(s)	406
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	147
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	120, 145, 150
BtsCI	GGATG	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	106, 181, 295, 400
Cfr13I	GGNCC	2 cut(s)	143, 461
CspCI	CAANNNNNGTGG	2 cut(s)	416, 451
CviAII	CATG	2 cut(s)	303, 380
CviJI	RGCY	9 cut(s)	37, 104, 120, 145, 150, 256, 275, 359, 480
CviKI_1	RGCY	9 cut(s)	37, 104, 120, 145, 150, 256, 275, 359, 480
DdeI	CTNAG	1 cut(s)	481
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
DrdI	GACNNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	251
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	461
Eco91I	GGTNACC	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	2 cut(s)	306, 383
FaiI	YATR	4 cut(s)	130, 235, 304, 381
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	302, 379
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	3 cut(s)	184, 313, 523
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	184, 313, 523
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	3 cut(s)	184, 313, 523
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	120, 145, 150
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	306, 383
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	357
HphI	GGTGA	2 cut(s)	176, 329
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	71, 263
Hpy188III	TCNNGA	1 cut(s)	375
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	2 cut(s)	191, 263
HpyAV	CCTTC	4 cut(s)	218, 377, 381, 470
HpyCH4III	ACNGT	2 cut(s)	366, 518
HpyCH4IV	ACGT	2 cut(s)	189, 204
HpyCH4V	TGCA	4 cut(s)	95, 128, 293, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	481
HpySE526I	ACGT	2 cut(s)	189, 204
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	306, 383
Kzo9I	GATC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	9 cut(s)	71, 94, 102, 132, 159, 189, 228, 456, 495
Lsp1109I	GCAGC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	2 cut(s)	189, 204
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	6 cut(s)	17, 32, 294, 338, 485, 501
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	106, 371
MluCI	AATT	1 cut(s)	504
MmeI	TCCRAC	3 cut(s)	94, 178, 241
MnlI	CCTC	5 cut(s)	134, 150, 155, 219, 257
MroXI	GAANNNNTTC	1 cut(s)	286
MslI	CAYNNNNRTG	1 cut(s)	43
MspA1I	CMGCKG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	306, 383
NlaIV	GGNNCC	2 cut(s)	230, 368
NmuCI	GTSAC	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	185, 314, 524
Psp6I	CCWGG	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	230, 368
PspPI	GGNCC	2 cut(s)	143, 461
RseI	CAYNNNNRTG	1 cut(s)	43
SatI	GCNGC	3 cut(s)	184, 313, 523
Sau3AI	GATC	1 cut(s)	236
Sau96I	GGNCC	2 cut(s)	143, 461
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	106, 371
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	43
Sse9I	AATT	1 cut(s)	504
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	5 cut(s)	106, 312, 402, 459, 523
SspMI	CTAG	1 cut(s)	551
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	366, 518
TaiI	ACGT	2 cut(s)	192, 207
TaqI	TCGA	3 cut(s)	211, 376, 406
TasI	AATT	1 cut(s)	504
TauI	GCSGC	2 cut(s)	315, 525
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	1 cut(s)	551
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.