Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008249.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

70712 .. 71877

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008249.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atggcggaggagagtgaacaagagaacgagggagatatggggttttccctagaggtacccactgacaagtcacaggagaaagtgacaactgttgtcagggaggcagacatgacggtggacgatacggagagggagagaagcacaaaagatggggccgacatcggagggtccaaacatgtcggtcaaaaggcctttctgcacaaggtctgtgagcgccttggatttggttgtgaggcgagagttcctcggccagcggcgtcatcaaagctggagaaatccctggatctgattttgaagggtgctcatgagctgtatcttcatcaagagaaggagaggaataagtccattactggggacattgcccagattgacggtgcccttcttgacgtcaaggagaagttcaagtgtgccgtggataaggccatcgcttataccgccactattgccaacctaaatacccagttggtggtcctgaagaaggagaaaattgagagagaagatatcatcgctcagttgcaagaggcgcttaccgccaaagagaaagaagttcaaggcactgctgccgcaaactttaaagagctcaaagatagcggctacttgaactttgacaaaatattagccgatcgagctccctcaaagtccgcgcctggcgaggatgttgtcattgatgatgttgagggatctgaagatggcagtacctcaaaaagtggctcatctaatggtgacgaagagagtggttcttctagagaagatggtgtaaggtttgatggtaatctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

28.14

Weight (kDa)

4.78

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
Acc65I	GGTACC	1 cut(s)	55
AccB1I	GGYRCC	2 cut(s)	55, 374
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccII	CGCG	1 cut(s)	644
AciI	CCGC	7 cut(s)	5, 254, 435, 531, 564, 591, 642
AclWI	GGATC	2 cut(s)	291, 688
AcoI	YGGCCR	1 cut(s)	248
AcuI	CTGAAG	2 cut(s)	494, 705
AcyI	GRCGYC	2 cut(s)	257, 387
AfaI	GTAC	2 cut(s)	57, 697
AfiI	CCNNNNNNNGG	3 cut(s)	351, 466, 478
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	295, 403, 551, 601
AjnI	CCWGG	2 cut(s)	279, 646
AluBI	AGCT	4 cut(s)	268, 310, 580, 629
AluI	AGCT	4 cut(s)	268, 310, 580, 629
Alw21I	GWGCWC	3 cut(s)	304, 582, 631
AlwI	GGATC	2 cut(s)	291, 688
AoxI	GGCC	4 cut(s)	153, 189, 248, 420
ApeKI	GCWGC	1 cut(s)	560
Asp718I	GGTACC	1 cut(s)	55
AspLEI	GCGC	3 cut(s)	216, 526, 646
AspS9I	GGNCC	3 cut(s)	153, 168, 469
AsuHPI	GGTGA	1 cut(s)	734
AvaII	GGWCC	2 cut(s)	168, 469
BaeGI	GKGCMC	1 cut(s)	379
BanI	GGYRCC	2 cut(s)	55, 374
BanII	GRGCYC	2 cut(s)	582, 631
Bbv12I	GWGCWC	3 cut(s)	304, 582, 631
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	5 cut(s)	143, 431, 683, 746, 761
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	2 cut(s)	281, 648
BfaI	CTAG	2 cut(s)	50, 744
BfoI	RGCGCY	2 cut(s)	217, 527
BisI	GCNGC	4 cut(s)	255, 561, 564, 592
BlsI	GCNGC	4 cut(s)	256, 562, 565, 593
Bme1390I	CCNGG	2 cut(s)	281, 648
Bme18I	GGWCC	2 cut(s)	168, 469
BmgT120I	GGNCC	3 cut(s)	153, 168, 469
BmiI	GGNNCC	4 cut(s)	57, 154, 169, 376
BmrFI	CCNGG	2 cut(s)	281, 648
BmrI	ACTGGG	2 cut(s)	360, 454
BmuI	ACTGGG	2 cut(s)	360, 454
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpmI	CTGGAG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	771
BsaHI	GRCGYC	2 cut(s)	257, 387
BsaJI	CCNNGG	4 cut(s)	217, 245, 279, 411
Bsc4I	CCNNNNNNNGG	3 cut(s)	351, 466, 478
Bse1I	ACTGG	2 cut(s)	355, 460
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	2 cut(s)	281, 648
BseDI	CCNNGG	4 cut(s)	217, 245, 279, 411
BseGI	GGATG	1 cut(s)	661
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	3 cut(s)	351, 466, 478
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	2 cut(s)	355, 460
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	547
BsgI	GTGCAG	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	644
Bsh1285I	CGRYCG	1 cut(s)	625
BshFI	GGCC	4 cut(s)	155, 191, 250, 422
BshNI	GGYRCC	2 cut(s)	55, 374
BsiEI	CGRYCG	1 cut(s)	625
BsiHKAI	GWGCWC	3 cut(s)	304, 582, 631
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	3 cut(s)	351, 466, 478
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	4 cut(s)	155, 191, 250, 422
Bsp1286I	GDGCHC	4 cut(s)	304, 379, 582, 631
Bsp143I	GATC	3 cut(s)	283, 622, 680
BspACI	CCGC	7 cut(s)	5, 254, 435, 531, 564, 591, 642
BspANI	GGCC	4 cut(s)	155, 191, 250, 422
BspCNI	CTCAG	1 cut(s)	523
BspFNI	CGCG	1 cut(s)	644
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	4 cut(s)	57, 154, 169, 376
BspPI	GGATC	2 cut(s)	291, 688
BspT107I	GGYRCC	2 cut(s)	55, 374
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	2 cut(s)	355, 460
BssECI	CCNNGG	4 cut(s)	217, 245, 279, 411
BssMI	GATC	3 cut(s)	283, 622, 680
BssNI	GRCGYC	2 cut(s)	257, 387
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	2 cut(s)	281, 648
Bst4CI	ACNGT	3 cut(s)	91, 115, 374
Bst6I	CTCTTC	1 cut(s)	723
BstACI	GRCGYC	2 cut(s)	257, 387
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	1 cut(s)	411
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	1 cut(s)	644
BstH2I	RGCGCY	2 cut(s)	217, 527
BstHHI	GCGC	3 cut(s)	216, 526, 646
BstKTI	GATC	3 cut(s)	286, 625, 683
BstMBI	GATC	3 cut(s)	283, 622, 680
BstMCI	CGRYCG	1 cut(s)	625
BstMWI	GCNNNNNNNGC	5 cut(s)	434, 443, 523, 530, 626
BstNI	CCWGG	2 cut(s)	281, 648
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	279, 646
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	1 cut(s)	547
BstX2I	RGATCY	2 cut(s)	283, 680
BstYI	RGATCY	2 cut(s)	283, 680
BsuRI	GGCC	4 cut(s)	155, 191, 250, 422
BtgI	CCRYGG	1 cut(s)	411
BtgZI	GCGATG	2 cut(s)	409, 490
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	60, 555
Cac8I	GCNNGC	1 cut(s)	252
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	3 cut(s)	216, 526, 646
Cfr13I	GGNCC	3 cut(s)	153, 168, 469
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	56, 696
CviAII	CATG	3 cut(s)	109, 176, 305
CviQI	GTAC	2 cut(s)	56, 696
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	3 cut(s)	285, 624, 682
DpnII	GATC	3 cut(s)	283, 622, 680
DraI	TTTAAA	1 cut(s)	574
EaeI	YGGCCR	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	580, 629
Eco130I	CCWWGG	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	191
Eco24I	GRGCYC	2 cut(s)	582, 631
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	2 cut(s)	168, 469
Eco53kI	GAGCTC	2 cut(s)	580, 629
Eco57I	CTGAAG	2 cut(s)	494, 705
EcoICRI	GAGCTC	2 cut(s)	580, 629
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	279, 646
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	217
EcoT38I	GRGCYC	2 cut(s)	582, 631
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	112, 179, 308
FaiI	YATR	5 cut(s)	38, 110, 177, 306, 432
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	108, 175, 304
Fnu4HI	GCNGC	4 cut(s)	255, 561, 564, 592
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	2 cut(s)	582, 631
Fsp4HI	GCNGC	4 cut(s)	255, 561, 564, 592
FspBI	CTAG	2 cut(s)	50, 744
GlaI	GCGC	3 cut(s)	215, 525, 645
GluI	GCNGC	4 cut(s)	255, 561, 564, 592
GsuI	CTGGAG	1 cut(s)	290
HaeII	RGCGCY	2 cut(s)	217, 527
HaeIII	GGCC	4 cut(s)	155, 191, 250, 422
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	3 cut(s)	216, 526, 646
Hin1I	GRCGYC	2 cut(s)	257, 387
Hin1II	CATG	3 cut(s)	112, 179, 308
Hin6I	GCGC	3 cut(s)	214, 524, 644
HinP1I	GCGC	3 cut(s)	214, 524, 644
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	2 cut(s)	17, 118
Hpy188I	TCNGA	3 cut(s)	164, 288, 685
Hpy188III	TCNNGA	5 cut(s)	305, 323, 383, 472, 744
Hpy8I	GTNNAC	2 cut(s)	17, 118
HpyAV	CCTTC	4 cut(s)	289, 322, 389, 472
HpyCH4III	ACNGT	3 cut(s)	91, 115, 374
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	2 cut(s)	199, 517
HpyF10VI	GCNNNNNNNGC	5 cut(s)	434, 443, 523, 530, 626
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	2 cut(s)	257, 387
Hsp92II	CATG	3 cut(s)	112, 179, 308
HspAI	GCGC	3 cut(s)	214, 524, 644
KpnI	GGTACC	1 cut(s)	59
Kzo9I	GATC	3 cut(s)	283, 622, 680
LmnI	GCTCC	1 cut(s)	634
Lsp1109I	GCAGC	1 cut(s)	547
MaeI	CTAG	2 cut(s)	50, 744
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	3 cut(s)	69, 82, 722
MalI	GATC	3 cut(s)	285, 624, 682
MboI	GATC	3 cut(s)	283, 622, 680
MboII	GAAGA	7 cut(s)	308, 487, 509, 698, 732, 740, 761
MflI	RGATCY	2 cut(s)	283, 680
MhlI	GDGCHC	4 cut(s)	304, 379, 582, 631
MluCI	AATT	1 cut(s)	486
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	281, 648
MvaI	CCWGG	2 cut(s)	281, 648
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	5 cut(s)	434, 443, 523, 530, 626
NdeII	GATC	3 cut(s)	283, 622, 680
NlaIII	CATG	3 cut(s)	112, 179, 308
NlaIV	GGNNCC	4 cut(s)	57, 154, 169, 376
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	3 cut(s)	69, 82, 722
NspI	RCATGY	1 cut(s)	179
PagI	TCATGA	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	191
PciI	ACATGT	1 cut(s)	175
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	256, 562, 565, 593
Ple19I	CGATCG	1 cut(s)	625
PscI	ACATGT	1 cut(s)	175
Psp124BI	GAGCTC	2 cut(s)	582, 631
Psp6I	CCWGG	2 cut(s)	279, 646
PspGI	CCWGG	2 cut(s)	279, 646
PspN4I	GGNNCC	4 cut(s)	57, 154, 169, 376
PspPI	GGNCC	3 cut(s)	153, 168, 469
PsuI	RGATCY	2 cut(s)	283, 680
PvuI	CGATCG	1 cut(s)	625
RsaI	GTAC	2 cut(s)	57, 697
RsaNI	GTAC	2 cut(s)	56, 696
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	2 cut(s)	582, 631
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	4 cut(s)	255, 561, 564, 592
Sau3AI	GATC	3 cut(s)	283, 622, 680
Sau96I	GGNCC	3 cut(s)	153, 168, 469
ScrFI	CCNGG	2 cut(s)	281, 648
SduI	GDGCHC	4 cut(s)	304, 379, 582, 631
SinI	GGWCC	2 cut(s)	168, 469
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	486
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	7 cut(s)	5, 254, 435, 531, 564, 591, 642
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	2 cut(s)	50, 744
SstI	GAGCTC	2 cut(s)	582, 631
StuI	AGGCCT	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	279, 646
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	3 cut(s)	91, 115, 374
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	625
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	1 cut(s)	486
TauI	GCSGC	3 cut(s)	257, 566, 594
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	2 cut(s)	67, 562
TseFI	GTSAC	3 cut(s)	69, 82, 722
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	3 cut(s)	69, 82, 722
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	67, 562
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	2 cut(s)	168, 469
XagI	CCTNNNNNAGG	1 cut(s)	476
XbaI	TCTAGA	1 cut(s)	743
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	2 cut(s)	50, 744
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.