Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000434.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

225010 .. 226049

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000434.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggggagattcgttgttccacagaagaggaaagttgtcgcttctaatgcccctctggatccttcaaagaaaatgaaggttgtagagaagactatggtggttggccaaaagggtgtcgggggaggtggttgtcagaggttagtgcaacatgcgcctaccaatcaacaagcctttttgcacaaggcggcagagagagagaagaacaaagccaccgagggggatattgccaagctcgacggtgcccttctggatgtgaaggagaaattcaagcatgcagtggacaaaagtgtcgccgatactacaactattgccaacctgaattccgagttagcagccttgaaaaaagagaaggccgagagagaagataccatcatcctgttgcaagaggcgcttaccgccaaagagaaggagttggaggacttccagtctgctgtacaggaagaaatggcgaagatggtggaggatgagaaggcaaagatttgctgtgaagcggtggatgctttcaagaaatctactgctttctcggagcttcttatagaagcaggtaggcaaggtgctgccgccaactttgaggagctcaagagcaaaggatacctgaactatgacaagatcattgttgatagaggcccgccaagtcccaagttggaagatgccgaggaatctggggatgatgagtcgtcaggtggcgggtcttctgatatcgatgaagagggtactcttcagatggcaatccgaagactccaatgccgacaagtaaagttgagaagaaaaagattggtactcgtcatcctgtcgacaagcgtcatcgtggtgatcgtacttctgggtcctcccctcatactaggcaagactagaatatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

31.34

Weight (kDa)

7.58

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	794
AciI	CCGC	6 cut(s)	185, 396, 491, 561, 629, 687
AclWI	GGATC	2 cut(s)	53, 66
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	263, 319
AcuI	CTGAAG	1 cut(s)	704
AfaI	GTAC	4 cut(s)	435, 715, 780, 819
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	4 cut(s)	66, 268, 340, 505
AhdI	GACNNNNNGTC	1 cut(s)	424
AluBI	AGCT	3 cut(s)	232, 529, 577
AluI	AGCT	3 cut(s)	232, 529, 577
Alw21I	GWGCWC	1 cut(s)	579
AlwI	GGATC	2 cut(s)	53, 66
AoxI	GGCC	3 cut(s)	103, 351, 625
ApeKI	GCWGC	2 cut(s)	332, 557
ApoI	RAATTY	2 cut(s)	263, 319
AspLEI	GCGC	2 cut(s)	154, 391
AspS9I	GGNCC	2 cut(s)	626, 827
AsuHPI	GGTGA	1 cut(s)	823
AvaII	GGWCC	1 cut(s)	827
BaeGI	GKGCMC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	105
BamHI	GGATCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	579
BbsI	GAAGAC	3 cut(s)	95, 684, 742
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	344, 544
BccI	CCATC	3 cut(s)	377, 448, 718
BciVI	GTATCC	1 cut(s)	584
BfaI	CTAG	2 cut(s)	842, 852
BfoI	RGCGCY	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	4 cut(s)	186, 333, 558, 561
BlsI	GCNGC	4 cut(s)	187, 334, 559, 562
Bme18I	GGWCC	1 cut(s)	827
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmgT120I	GGNCC	2 cut(s)	626, 827
BmiI	GGNNCC	3 cut(s)	60, 241, 828
BmsI	GCATC	2 cut(s)	487, 640
BoxI	GACNNNNGTC	1 cut(s)	800
BpiI	GAAGAC	3 cut(s)	95, 684, 742
BpuEI	CTTGAG	1 cut(s)	563
Bsa29I	ATCGAT	1 cut(s)	702
BsaBI	GATNNNNATC	1 cut(s)	728
BsaJI	CCNNGG	2 cut(s)	213, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	728
BseCI	ATCGAT	1 cut(s)	702
BseDI	CCNNGG	2 cut(s)	213, 654
BseGI	GGATG	6 cut(s)	256, 372, 469, 502, 673, 786
BseJI	GATNNNNATC	1 cut(s)	728
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	587
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	344, 544
BshFI	GGCC	3 cut(s)	105, 353, 627
BshNI	GGYRCC	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	621
BsnI	GGCC	3 cut(s)	105, 353, 627
Bsp1286I	GDGCHC	2 cut(s)	244, 579
Bsp1407I	TGTACA	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	58, 609, 813
BspACI	CCGC	6 cut(s)	185, 396, 491, 561, 629, 687
BspANI	GGCC	3 cut(s)	105, 353, 627
BspDI	ATCGAT	1 cut(s)	702
BspLI	GGNNCC	3 cut(s)	60, 241, 828
BspMI	ACCTGC	1 cut(s)	533
BspPI	GGATC	2 cut(s)	53, 66
BspT107I	GGYRCC	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	213, 654
BssMI	GATC	3 cut(s)	58, 609, 813
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	3 cut(s)	20, 702, 723
BstAUI	TGTACA	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	273, 629
BstF5I	GGATG	6 cut(s)	256, 372, 469, 502, 673, 786
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	154, 391
BstKTI	GATC	3 cut(s)	61, 612, 816
BstMBI	GATC	3 cut(s)	58, 609, 813
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 151, 388, 395, 497
BstNSI	RCATGY	2 cut(s)	152, 275
BstPAI	GACNNNNGTC	1 cut(s)	800
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	344, 544
BstV2I	GAAGAC	3 cut(s)	95, 684, 742
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	702
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	3 cut(s)	105, 353, 627
BsuTUI	ATCGAT	1 cut(s)	702
BtsCI	GGATG	6 cut(s)	256, 372, 469, 502, 673, 786
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	2 cut(s)	273, 629
CfoI	GCGC	2 cut(s)	154, 391
Cfr13I	GGNCC	2 cut(s)	626, 827
ClaI	ATCGAT	1 cut(s)	702
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	4 cut(s)	434, 714, 779, 818
CviAII	CATG	2 cut(s)	149, 272
CviJI	RGCY	9 cut(s)	105, 170, 209, 232, 335, 353, 529, 577, 627
CviKI_1	RGCY	9 cut(s)	105, 170, 209, 232, 335, 353, 529, 577, 627
CviQI	GTAC	4 cut(s)	434, 714, 779, 818
DpnI	GATC	3 cut(s)	60, 611, 815
DpnII	GATC	3 cut(s)	58, 609, 813
DrdI	GACNNNNNNGTC	1 cut(s)	287
DriI	GACNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	3 cut(s)	20, 702, 723
Eam1105I	GACNNNNNGTC	1 cut(s)	424
EarI	CTCTTC	3 cut(s)	20, 702, 723
Ecl136II	GAGCTC	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	579
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	827
Eco53kI	GAGCTC	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	704
EcoICRI	GAGCTC	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	319
EcoRV	GATATC	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	579
FaeI	CATG	2 cut(s)	152, 275
FaiI	YATR	7 cut(s)	95, 150, 273, 536, 603, 839, 859
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	2 cut(s)	148, 271
FauI	CCCGC	2 cut(s)	636, 680
FblI	GTMKAC	1 cut(s)	794
Fnu4HI	GCNGC	4 cut(s)	186, 333, 558, 561
FokI	GGATG	6 cut(s)	263, 359, 476, 509, 680, 773
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	4 cut(s)	186, 333, 558, 561
FspBI	CTAG	2 cut(s)	842, 852
GlaI	GCGC	2 cut(s)	153, 390
GluI	GCNGC	4 cut(s)	186, 333, 558, 561
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	105, 353, 627
HgaI	GACGC	1 cut(s)	790
HhaI	GCGC	2 cut(s)	154, 391
Hin1II	CATG	2 cut(s)	152, 275
Hin6I	GCGC	2 cut(s)	152, 389
HinP1I	GCGC	2 cut(s)	152, 389
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HinfI	GANTC	4 cut(s)	9, 659, 674, 738
HphI	GGTGA	1 cut(s)	823
Hpy166II	GTNNAC	2 cut(s)	280, 795
Hpy188I	TCNGA	6 cut(s)	135, 325, 526, 697, 723, 734
Hpy188III	TCNNGA	4 cut(s)	56, 248, 505, 580
Hpy8I	GTNNAC	2 cut(s)	280, 795
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	7 cut(s)	70, 72, 250, 254, 343, 400, 463
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	4 cut(s)	145, 178, 275, 382
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 151, 388, 395, 497
Hsp92II	CATG	2 cut(s)	152, 275
HspAI	GCGC	2 cut(s)	152, 389
Kzo9I	GATC	3 cut(s)	58, 609, 813
LmnI	GCTCC	2 cut(s)	526, 574
Lsp1109I	GCAGC	2 cut(s)	344, 544
LweI	GCATC	2 cut(s)	487, 640
MaeI	CTAG	2 cut(s)	842, 852
MalI	GATC	3 cut(s)	60, 611, 815
MboI	GATC	3 cut(s)	58, 609, 813
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	244, 579
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	2 cut(s)	263, 319
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	683, 732
MmeI	TCCRAC	2 cut(s)	393, 624
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	809
Msp20I	TGGCCA	1 cut(s)	105
MwoI	GCNNNNNNNGC	5 cut(s)	47, 151, 388, 395, 497
NdeII	GATC	3 cut(s)	58, 609, 813
NlaIII	CATG	2 cut(s)	152, 275
NlaIV	GGNNCC	3 cut(s)	60, 241, 828
NmeAIII	GCCGAG	2 cut(s)	379, 679
NspI	RCATGY	2 cut(s)	152, 275
PaeI	GCATGC	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	813
PfeI	GAWTC	2 cut(s)	9, 659
PkrI	GCNGC	4 cut(s)	187, 334, 559, 562
PleI	GAGTC	2 cut(s)	682, 732
PpsI	GAGTC	2 cut(s)	682, 732
PpuMI	RGGWCCY	1 cut(s)	827
PshAI	GACNNNNGTC	1 cut(s)	800
Psp124BI	GAGCTC	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	827
PspN4I	GGNNCC	3 cut(s)	60, 241, 828
PspPI	GGNCC	2 cut(s)	626, 827
PspPPI	RGGWCCY	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	4 cut(s)	435, 715, 780, 819
RsaNI	GTAC	4 cut(s)	434, 714, 779, 818
RseI	CAYNNNNRTG	1 cut(s)	809
SacI	GAGCTC	1 cut(s)	579
SalI	GTCGAC	1 cut(s)	793
SatI	GCNGC	4 cut(s)	186, 333, 558, 561
Sau3AI	GATC	3 cut(s)	58, 609, 813
Sau96I	GGNCC	2 cut(s)	626, 827
SchI	GAGTC	2 cut(s)	683, 732
SduI	GDGCHC	2 cut(s)	244, 579
SfaNI	GCATC	2 cut(s)	487, 640
SinI	GGWCC	1 cut(s)	827
SmiMI	CAYNNNNRTG	1 cut(s)	809
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	2 cut(s)	263, 319
SsiI	CCGC	6 cut(s)	185, 396, 491, 561, 629, 687
SspMI	CTAG	2 cut(s)	842, 852
SstI	GAGCTC	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	3 cut(s)	234, 702, 794
TasI	AATT	2 cut(s)	263, 319
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	2 cut(s)	188, 563
TfiI	GAWTC	2 cut(s)	9, 659
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	2 cut(s)	332, 557
TspDTI	ATGAA	2 cut(s)	89, 720
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	827
XapI	RAATTY	2 cut(s)	263, 319
XceI	RCATGY	2 cut(s)	152, 275
XmiI	GTMKAC	1 cut(s)	794
XspI	CTAG	2 cut(s)	842, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.