Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000315.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

2758 .. 3567

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000315.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgtggcgaaggagggcgaacaagagaatgaagaagatacgggtttttatactggaggtacccgctgataagcgtcaggagaaaacgacaactgttgtcggggaaccggatgtggcaggggaagatgttgataaggagagaagaaaaaagactgtggtggataagggaggcattaagcagggcgggcaaagggttgttggtgggtctggtagcgatgcccgcgacctttcagtaggggagtttgctgtgccacagaagaggaagatttttgcctccacagtttccctagatcctttgaagaagatgaaagctagagagaggaatatgttggttggccacaaggatgtcgggggaggtttagcggaggagcacaagctaaaggaagaactcctgcaggcacagcgtgacttgtcggcagaaaaggagaaaaaaaaatccaccttgggggacattgccaagcttgacggtgcccttcttgacgtgaaagaaaagtttaagcgtgcggtggataagactatcgccgacaataccaccattgccaacctaaatgccgagttggcgggtctgaagaaagagagagctgagagggcggataccatcgctcagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.5

Weight (kDa)

9.84

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	58
AccB1I	GGYRCC	2 cut(s)	58, 467
AccII	CGCG	1 cut(s)	222
AciI	CCGC	7 cut(s)	63, 183, 220, 362, 503, 560, 590
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	587
AdeI	CACNNNGTG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	444
AgsI	TTSAA	1 cut(s)	298
AjiI	CACGTC	1 cut(s)	481
AluBI	AGCT	5 cut(s)	311, 376, 460, 581, 607
AluI	AGCT	5 cut(s)	311, 376, 460, 581, 607
Alw21I	GWGCWC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	334
Asp718I	GGTACC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	336
BanI	GGYRCC	2 cut(s)	58, 467
Bbv12I	GWGCWC	1 cut(s)	372
BccI	CCATC	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	586
BfaI	CTAG	2 cut(s)	287, 312
BfmI	CTRYAG	2 cut(s)	392, 608
BfuI	GTATCC	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	557
BlpI	GCTNAGC	1 cut(s)	603
BmgBI	CACGTC	1 cut(s)	481
BmiI	GGNNCC	3 cut(s)	60, 105, 469
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	603
BsaJI	CCNNGG	1 cut(s)	441
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	2 cut(s)	450, 534
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	115, 349
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	2 cut(s)	450, 534
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	380
BseSI	GKGCMC	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	2 cut(s)	58, 467
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	372, 472
Bsp143I	GATC	1 cut(s)	289
Bsp1720I	GCTNAGC	1 cut(s)	603
BspACI	CCGC	7 cut(s)	63, 183, 220, 362, 503, 560, 590
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	1 cut(s)	574
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	60, 105, 469
BspMAI	CTGCAG	1 cut(s)	396
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	2 cut(s)	58, 467
BsrDI	GCAATG	2 cut(s)	450, 534
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	441
Bst4CI	ACNGT	4 cut(s)	94, 154, 280, 467
Bst6I	CTCTTC	1 cut(s)	251
BstC8I	GCNNGC	4 cut(s)	185, 220, 396, 501
BstDEI	CTNAG	2 cut(s)	582, 603
BstF5I	GGATG	2 cut(s)	115, 349
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	5 cut(s)	184, 219, 400, 557, 587
BstSFI	CTRYAG	2 cut(s)	392, 608
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	1 cut(s)	336
BtgZI	GCGATG	2 cut(s)	228, 583
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	115, 349
Cac8I	GCNNGC	4 cut(s)	185, 220, 396, 501
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	59
CviJI	RGCY	6 cut(s)	311, 336, 376, 460, 581, 607
CviKI_1	RGCY	6 cut(s)	311, 336, 376, 460, 581, 607
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	2 cut(s)	582, 603
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraIII	CACNNNGTG	1 cut(s)	404
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	587
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaiI	YATR	2 cut(s)	50, 326
FaqI	GGGAC	1 cut(s)	461
FauI	CCCGC	4 cut(s)	70, 176, 227, 553
FokI	GGATG	2 cut(s)	122, 356
FspBI	CTAG	2 cut(s)	287, 312
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	458
HpaII	CCGG	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	567
Hpy188III	TCNNGA	2 cut(s)	77, 476
HpyAV	CCTTC	2 cut(s)	3, 482
HpyCH4III	ACNGT	4 cut(s)	94, 154, 280, 467
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	5 cut(s)	184, 219, 400, 557, 587
HpyF3I	CTNAG	2 cut(s)	582, 603
HpySE526I	ACGT	1 cut(s)	480
KpnI	GGTACC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	8 cut(s)	38, 62, 102, 120, 164, 192, 380, 404
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	287, 312
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	372, 472
MlsI	TGGCCA	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	336
MnlI	CCTC	9 cut(s)	6, 49, 161, 252, 283, 312, 347, 358, 579
Mox20I	TGGCCA	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	336
MseI	TTAA	2 cut(s)	174, 495
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	336
MspA1I	CMGCKG	2 cut(s)	65, 607
MspI	CCGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	5 cut(s)	184, 219, 400, 557, 587
NdeII	GATC	1 cut(s)	289
NlaIV	GGNNCC	3 cut(s)	60, 105, 469
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	404
PspN4I	GGNNCC	3 cut(s)	60, 105, 469
PstI	CTGCAG	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	174, 495
Sau3AI	GATC	1 cut(s)	289
SbfI	CCTGCAGG	1 cut(s)	396
SdaI	CCTGCAGG	1 cut(s)	396
SduI	GDGCHC	2 cut(s)	372, 472
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	2 cut(s)	392, 608
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse8387I	CCTGCAGG	1 cut(s)	396
SsiI	CCGC	7 cut(s)	63, 183, 220, 362, 503, 560, 590
SspMI	CTAG	2 cut(s)	287, 312
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	4 cut(s)	94, 154, 280, 467
TaiI	ACGT	1 cut(s)	483
Tru1I	TTAA	2 cut(s)	174, 495
Tru9I	TTAA	2 cut(s)	174, 495
TseFI	GTSAC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	44, 320
XspI	CTAG	2 cut(s)	287, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.