Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002000.1

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

2433 .. 8220

Gene Structure 5788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atggtggcgaatgtcaacgacgtaggaaccaagcacgacctcccaatgggcctgatggagaatgactctgccacgtttctctccaccgacaactcctgcccagatatcttcttccacatcatcccaaacactccaggcgactacctcaccgatgggactccaatggcggccagtgtagtgtcattggcttcttccctcactttcgcgacgaaagagattgatgtaacggaatggaaaggggcaggtgttagtgttacgcagaaggacttggcgaaagatcagaactcgaaattcaaaaatatgatattgaagaagctggattcctgtttgggtggggtgttggctgaggtcttgactgaggaggacttcataggaaagtctggccagtctactgttgttaggcttcctggtcttggctcaaagagggttggcttgtttgggcttggacaatttggttcgtctacagaagcttttaagggtcttggggaggttgcagcagcagcggcaaagacactcaagcaagtgatattgctatgtgcttgcttccttggaggggctttctgcgaaatcttgccaatgttctcacacctagttcgttttggctttactattgccattttggtgggccatacttatgaacttgcagcagagttttctgatcctatcaatggtatcacatcccctgatcaaattgacgagggtttgcaatctcttcttcttgtcaggtggcagccatgggcaacgttggctcgcctcgtcgactaccgactgctgccgggtaggaatttgaatactagaggcctggaagctttgtggagaggggcttggctcgaatttggctctgaatggttttggcgacgagctccgaacgacatctttagagcggtgggcggcgatgcaacacaggtggcgattcgtcgaggatcctccaagatcagtgacatgctggcaggggctggatcagctgcatcttgggagactggatttgatgcggcgtggcttagtcgagttttgatggtaagttgcggtggtcgggttcggcatgggcttgtggtggcgaggtcggtgttggcttgccggtgtgatctggcgttggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

366

Amino Acids

39.35

Weight (kDa)

6.0

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	99 - 173	1e-11	Cytosol aminopeptidase family, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	884
AccI	GTMKAC	3 cut(s)	389, 461, 759
AccII	CGCG	1 cut(s)	206
AciI	CCGC	6 cut(s)	167, 503, 884, 891, 992, 1026
AclI	AACGTT	1 cut(s)	743
AclWI	GGATC	4 cut(s)	653, 918, 931, 967
AcoI	YGGCCR	2 cut(s)	168, 382
AcsI	RAATTY	3 cut(s)	290, 784, 833
AfiI	CCNNNNNNNGG	4 cut(s)	46, 413, 553, 668
AgsI	TTSAA	3 cut(s)	295, 310, 790
AjnI	CCWGG	3 cut(s)	133, 406, 801
AluBI	AGCT	5 cut(s)	316, 470, 809, 863, 965
AluI	AGCT	5 cut(s)	316, 470, 809, 863, 965
Alw21I	GWGCWC	1 cut(s)	865
Alw26I	GTCTC	1 cut(s)	971
AlwI	GGATC	4 cut(s)	653, 918, 931, 967
AlwNI	CAGNNNCTG	1 cut(s)	956
AoxI	GGCC	5 cut(s)	49, 168, 382, 625, 799
ApeKI	GCWGC	7 cut(s)	494, 497, 500, 644, 730, 772, 965
ApoI	RAATTY	3 cut(s)	290, 784, 833
AspS9I	GGNCC	2 cut(s)	49, 625
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	923
BanII	GRGCYC	1 cut(s)	865
Bbv12I	GWGCWC	1 cut(s)	865
BbvCI	CCTCAGC	1 cut(s)	345
BbvI	GCAGC	7 cut(s)	506, 509, 512, 656, 742, 759, 952
BccI	CCATC	3 cut(s)	49, 146, 1009
BciT130I	CCWGG	3 cut(s)	135, 408, 803
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	777
BcoDI	GTCTC	1 cut(s)	971
BfaI	CTAG	2 cut(s)	590, 795
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	233
Bme1390I	CCNGG	4 cut(s)	135, 408, 777, 803
BmgT120I	GGNCC	2 cut(s)	49, 625
BmiI	GGNNCC	2 cut(s)	28, 925
BmrFI	CCNGG	4 cut(s)	135, 408, 777, 803
BmsI	GCATC	3 cut(s)	886, 977, 979
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	547, 734
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 413, 553, 668
Bse118I	RCCGGY	1 cut(s)	1077
Bse1I	ACTGG	3 cut(s)	171, 385, 985
BseBI	CCWGG	3 cut(s)	135, 408, 803
BseDI	CCNNGG	2 cut(s)	547, 734
BseGI	GGATG	2 cut(s)	120, 677
BseLI	CCNNNNNNNGG	4 cut(s)	46, 413, 553, 668
BseMII	CTCAG	2 cut(s)	336, 348
BseNI	ACTGG	3 cut(s)	171, 385, 985
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	7 cut(s)	506, 509, 512, 656, 742, 759, 952
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	5 cut(s)	51, 170, 384, 627, 801
BsiHKAI	GWGCWC	1 cut(s)	865
BsiSI	CCGG	2 cut(s)	776, 1078
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	4 cut(s)	46, 413, 553, 668
BsmAI	GTCTC	1 cut(s)	971
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	5 cut(s)	51, 170, 384, 627, 801
Bsp1286I	GDGCHC	1 cut(s)	865
Bsp143I	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
Bsp19I	CCATGG	1 cut(s)	734
Bsp68I	TCGCGA	1 cut(s)	206
BspACI	CCGC	6 cut(s)	167, 503, 884, 891, 992, 1026
BspANI	GGCC	5 cut(s)	51, 170, 384, 627, 801
BspCNI	CTCAG	2 cut(s)	337, 349
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	28, 925
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	4 cut(s)	653, 918, 931, 967
BsrBI	CCGCTC	1 cut(s)	884
BsrFI	RCCGGY	1 cut(s)	1077
BsrI	ACTGG	3 cut(s)	171, 385, 985
BssAI	RCCGGY	1 cut(s)	1077
BssECI	CCNNGG	2 cut(s)	547, 734
BssMI	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
BssT1I	CCWWGG	2 cut(s)	547, 734
Bst2UI	CCWGG	3 cut(s)	135, 408, 803
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	717
BstC8I	GCNNGC	4 cut(s)	541, 751, 948, 1075
BstDEI	CTNAG	3 cut(s)	345, 357, 1001
BstDSI	CCRYGG	1 cut(s)	734
BstF5I	GGATG	2 cut(s)	120, 677
BstFNI	CGCG	1 cut(s)	206
BstKTI	GATC	7 cut(s)	280, 661, 688, 926, 936, 962, 1087
BstMAI	GTCTC	1 cut(s)	971
BstMBI	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
BstMWI	GCNNNNNNNGC	4 cut(s)	500, 503, 746, 962
BstNI	CCWGG	3 cut(s)	135, 408, 803
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	4 cut(s)	133, 406, 775, 801
BstSFI	CTRYAG	1 cut(s)	462
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	7 cut(s)	506, 509, 512, 656, 742, 759, 952
BstX2I	RGATCY	1 cut(s)	923
BstXI	CCANNNNNNTGG	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	923
BsuRI	GGCC	5 cut(s)	51, 170, 384, 627, 801
BtgI	CCRYGG	1 cut(s)	734
BtgZI	GCGATG	1 cut(s)	909
BtsCI	GGATG	2 cut(s)	120, 677
BtsIMutI	CAGTG	2 cut(s)	178, 943
BtuMI	TCGCGA	1 cut(s)	206
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	4 cut(s)	541, 751, 948, 1075
CaiI	CAGNNNCTG	1 cut(s)	956
Cfr10I	RCCGGY	1 cut(s)	1077
Cfr13I	GGNCC	2 cut(s)	49, 625
CspCI	CAANNNNNGTGG	2 cut(s)	888, 923
CviAII	CATG	3 cut(s)	735, 943, 1043
DdeI	CTNAG	3 cut(s)	345, 357, 1001
DpnI	GATC	7 cut(s)	279, 660, 687, 925, 935, 961, 1086
DpnII	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
EaeI	YGGCCR	2 cut(s)	168, 382
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	863
Eco130I	CCWWGG	2 cut(s)	547, 734
Eco147I	AGGCCT	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	865
Eco32I	GATATC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	863
EcoICRI	GAGCTC	1 cut(s)	863
EcoRII	CCWGG	3 cut(s)	133, 406, 801
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	547, 734
EcoT38I	GRGCYC	1 cut(s)	865
ErhI	CCWWGG	2 cut(s)	547, 734
FaeI	CATG	3 cut(s)	738, 946, 1046
FaiI	YATR	8 cut(s)	302, 371, 535, 630, 636, 736, 944, 1044
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	3 cut(s)	734, 942, 1042
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	3 cut(s)	389, 461, 759
FokI	GGATG	2 cut(s)	107, 664
FriOI	GRGCYC	1 cut(s)	865
FspBI	CTAG	2 cut(s)	590, 795
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	51, 170, 384, 627, 801
HapII	CCGG	2 cut(s)	776, 1078
Hin1II	CATG	3 cut(s)	738, 946, 1046
HincII	GTYRAC	2 cut(s)	16, 760
HindII	GTYRAC	2 cut(s)	16, 760
HindIII	AAGCTT	2 cut(s)	468, 807
HinfI	GANTC	4 cut(s)	65, 157, 320, 913
HpaII	CCGG	2 cut(s)	776, 1078
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	4 cut(s)	16, 390, 462, 760
Hpy188I	TCNGA	4 cut(s)	282, 658, 844, 867
Hpy188III	TCNNGA	2 cut(s)	205, 352
Hpy8I	GTNNAC	4 cut(s)	16, 390, 462, 760
Hpy99I	CGWCG	5 cut(s)	23, 211, 761, 861, 921
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	3 cut(s)	21, 74, 743
HpyCH4V	TGCA	5 cut(s)	494, 644, 706, 899, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	500, 503, 746, 962
HpyF3I	CTNAG	3 cut(s)	345, 357, 1001
HpySE526I	ACGT	3 cut(s)	21, 74, 743
Hsp92II	CATG	3 cut(s)	738, 946, 1046
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	7 cut(s)	506, 509, 512, 656, 742, 759, 952
LweI	GCATC	3 cut(s)	886, 977, 979
MaeI	CTAG	2 cut(s)	590, 795
MaeII	ACGT	3 cut(s)	21, 74, 743
MaeIII	GTNAC	3 cut(s)	223, 253, 938
MalI	GATC	7 cut(s)	279, 660, 687, 925, 935, 961, 1086
MbiI	CCGCTC	1 cut(s)	884
MboI	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
MboII	GAAGA	6 cut(s)	100, 103, 183, 322, 704, 707
MflI	RGATCY	1 cut(s)	923
MhlI	GDGCHC	1 cut(s)	865
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	5 cut(s)	290, 449, 690, 784, 833
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	59, 151
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	2 cut(s)	620, 633
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	2 cut(s)	503, 965
MspI	CCGG	2 cut(s)	776, 1078
MspR9I	CCNGG	4 cut(s)	135, 408, 777, 803
MvaI	CCWGG	3 cut(s)	135, 408, 803
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	500, 503, 746, 962
NciI	CCSGG	1 cut(s)	777
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
NlaIII	CATG	3 cut(s)	738, 946, 1046
NlaIV	GGNNCC	2 cut(s)	28, 925
NmuCI	GTSAC	1 cut(s)	938
NruI	TCGCGA	1 cut(s)	206
NspI	RCATGY	1 cut(s)	946
PaqCI	CACCTGC	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	320, 913
PleI	GAGTC	2 cut(s)	59, 151
PpsI	GAGTC	2 cut(s)	59, 151
Psp124BI	GAGCTC	1 cut(s)	865
Psp1406I	AACGTT	1 cut(s)	743
Psp6I	CCWGG	3 cut(s)	133, 406, 801
PspGI	CCWGG	3 cut(s)	133, 406, 801
PspN4I	GGNNCC	2 cut(s)	28, 925
PspPI	GGNCC	2 cut(s)	49, 625
PstNI	CAGNNNCTG	1 cut(s)	956
PsuI	RGATCY	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	965
RruI	TCGCGA	1 cut(s)	206
RseI	CAYNNNNRTG	2 cut(s)	620, 633
SacI	GAGCTC	1 cut(s)	865
SalI	GTCGAC	1 cut(s)	758
SaqAI	TTAA	1 cut(s)	474
Sau3AI	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
Sau96I	GGNCC	2 cut(s)	49, 625
SchI	GAGTC	2 cut(s)	59, 151
ScrFI	CCNGG	4 cut(s)	135, 408, 777, 803
SduI	GDGCHC	1 cut(s)	865
SfaNI	GCATC	3 cut(s)	886, 977, 979
SfcI	CTRYAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	2 cut(s)	620, 633
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	5 cut(s)	290, 449, 690, 784, 833
SseBI	AGGCCT	1 cut(s)	801
SsiI	CCGC	6 cut(s)	167, 503, 884, 891, 992, 1026
SspMI	CTAG	2 cut(s)	590, 795
SstI	GAGCTC	1 cut(s)	865
StuI	AGGCCT	1 cut(s)	801
StyD4I	CCNGG	4 cut(s)	133, 406, 775, 801
StyI	CCWWGG	2 cut(s)	547, 734
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	3 cut(s)	24, 77, 746
TaqI	TCGA	5 cut(s)	287, 759, 831, 919, 1006
TasI	AATT	5 cut(s)	290, 449, 690, 784, 833
TauI	GCSGC	4 cut(s)	170, 506, 894, 995
TfiI	GAWTC	2 cut(s)	320, 913
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	2 cut(s)	178, 943
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	7 cut(s)	494, 497, 500, 644, 730, 772, 965
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	2 cut(s)	358, 651
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	178, 943
XapI	RAATTY	3 cut(s)	290, 784, 833
XceI	RCATGY	1 cut(s)	946
XmiI	GTMKAC	3 cut(s)	389, 461, 759
XspI	CTAG	2 cut(s)	590, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.