Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002680.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Forward (+)

171430 .. 174221

Gene Structure 2792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2118 bp

atgccggccgttatcgatatctcaagtagtaaagaatcggacgtgttgtcgcttaattcgttggagaggggttttattgatttgttgcgtcaccctacttctgcaggaggcagcttggaggaaccgctaaatattgtccctctgcgaaccatttctcagtcacctatggcatcccaaggaaatgaagagcaccaatttggtcgtcgtactagggaagaagaggtgttcgatagtagtgaagaaagtgtcggcgcctcgggacaaagtaatgacgggtttaagattggagaggaaggtcaaagttccagacctaccaacttttcgtgggtcctcagtgatggcattggagtagacgaaccttcctccatcatgtcgtggggaaagatacataagatgaaagataggtttcgcctgcccaacattgtgaaattgctgccgctagaaaagggtgaaaaagctactgacttgtcggaaggctacgctgctatccacgaatctatacttcaccatggtgtgaaattgtcgctacttcctagcttacaatatctattgcatgagctgaatgttgcggtaggtcaagtttcaataaacatgtggaagatgttattggccttgaccgccttgtgggatttatcggggtgtgaatttcccacggtggcggaagtactattcttttacgagttgacatataacgaaaggaaacaatgtggcaggaccattaaactaactcgtcgacctagagccccaaaacttctggagcatactcccgattcttctacaacgtgttgggccgccgtgtgcattgttacagaagattgggaatacggtacaaggccagaggggacaaaggctctgcggttccgggttccctcaaagtttcaagcgataaaagagggtcggagacagaaattgacagacatcgagcgacagagggtgtgtcgggtgcattactgttggacgcacaaaagttggctggatcttcgcatcctatcgcactggtcgttgcttattcatcaacgcttgactcgcaagcccgaagaagaaaacaaggggcccaaaaaaagatgtggcggaggaggtgagcaagggaatgaagatactgggtttgttctggaggtacatgctgataagtctcaggagaaagcgataactgttgtcggggagtcggatgtggtagaggaagatactgagagagaaaagagaacaaaggttatggcggatagaggaggggccaaggatgttggtcaaaaggttatcggtggtattggtggggatgccaaaggtcagccagcaaggtggtccgctgtgccgcaaaagaggaaaattttcgcctccgccgttcctcctgatccctcgaagaagatgaaggttgtggagaagaatgtggcagttggtgacaaggatgtcgggggaagtgggtttgtctccgacaaccccgtggttgggctggtacaaagtgcgccactaatcaacatgcctttctatataaggtgtgtgagcgtcttggctttggcgatgaggggagagcttcctggccagcggcagcgtcaaacggcagagagagagaaaagcaaggtcaccgcaggagatattgccaagcttgacgatgtccttctcaacgtgaaggagaaattcaagcgtgcggtggataaaagtatcaccggcaccactactatcgccaatgtcaataccgagttgacgaccctaaaaaaggagaaggctgagagggaagattctatcgcccagttgcagcaggcgcttacttccaaagagaaagagttggcggacttccagtctgctgggcaggaagagatggcgaaactggcagaggacgagaaggagatggtgcgcttagaggcggttgttgcttttaagaagtcggcaaagttcaagacgcttctgacagatgctgcccctccacagtccacgcctggtgaggatgtcgaagtgggggatgttgagggatttgaagatgacgaggatattgtgaggtctgatgctaatcttgcgactccgacgttgacaagaagaaaaaaaatgggtactggtcagcttgtcgagaaacgtcgtcgtggtgattgcgtttcggggtcctcctttcaggccgagcaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_28

Protein Analysis

705

Amino Acids

78.1

Weight (kDa)

6.43

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1403
AccB1I	GGYRCC	2 cut(s)	251, 1664
AccI	GTMKAC	2 cut(s)	351, 733
AclWI	GGATC	2 cut(s)	984, 1343
AcoI	YGGCCR	2 cut(s)	6, 1534
AcsI	RAATTY	3 cut(s)	644, 1323, 1631
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	6 cut(s)	208, 666, 829, 1119, 1452, 2044
AfiI	CCNNNNNNNGG	4 cut(s)	624, 1442, 1443, 1711
AflIII	ACRYGT	3 cut(s)	42, 591, 782
AgsI	TTSAA	5 cut(s)	585, 881, 1636, 1891, 1970
AhdI	GACNNNNNGTC	2 cut(s)	46, 1792
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	1531, 1930
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AleI	CACNNNNGTG	1 cut(s)	510
AluBI	AGCT	7 cut(s)	114, 458, 537, 559, 1528, 1600, 2053
AluI	AGCT	7 cut(s)	114, 458, 537, 559, 1528, 1600, 2053
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	3 cut(s)	895, 1137, 1429
AlwI	GGATC	2 cut(s)	984, 1343
AlwNI	CAGNNNCTG	1 cut(s)	1910
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	8 cut(s)	6, 609, 789, 833, 1052, 1230, 1534, 2103
ApaI	GGGCCC	1 cut(s)	1056
ApeKI	GCWGC	6 cut(s)	111, 433, 482, 1543, 1750, 1910
ApoI	RAATTY	3 cut(s)	644, 1323, 1631
Asp700I	GAANNNNTTC	2 cut(s)	151, 1325
AspLEI	GCGC	4 cut(s)	254, 1462, 1759, 1851
AspS9I	GGNCC	8 cut(s)	328, 714, 789, 1052, 1053, 1230, 1299, 2091
AsuC2I	CCSGG	1 cut(s)	863
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	4 cut(s)	328, 714, 1299, 2091
BaeGI	GKGCMC	1 cut(s)	1056
BalI	TGGCCA	1 cut(s)	1536
BanI	GGYRCC	2 cut(s)	251, 1664
BanII	GRGCYC	2 cut(s)	745, 1056
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	6 cut(s)	123, 420, 469, 1555, 1762, 1897
BccI	CCATC	4 cut(s)	332, 374, 1807, 1837
BceAI	ACGGC	3 cut(s)	779, 1322, 1569
BciT130I	CCWGG	2 cut(s)	1533, 1932
BcnI	CCSGG	1 cut(s)	863
BcoDI	GTCTC	3 cut(s)	895, 1137, 1429
BfaI	CTAG	4 cut(s)	210, 440, 534, 738
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	2 cut(s)	255, 1760
BmcAI	AGTACT	1 cut(s)	666
Bme1390I	CCNGG	3 cut(s)	863, 1533, 1932
Bme18I	GGWCC	4 cut(s)	328, 714, 1299, 2091
BmeRI	GACNNNNNGTC	2 cut(s)	46, 1792
BmeT110I	CYCGRG	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	8 cut(s)	328, 714, 789, 1052, 1053, 1230, 1299, 2091
BmrFI	CCNGG	3 cut(s)	863, 1533, 1932
BmrI	ACTGGG	2 cut(s)	1110, 1738
BmsI	GCATC	5 cut(s)	179, 993, 1264, 1897, 1987
BmuI	ACTGGG	2 cut(s)	1110, 1738
BpmI	CTGGAG	2 cut(s)	776, 1133
BpuEI	CTTGAG	1 cut(s)	7
BpuMI	CCSGG	1 cut(s)	863
Bsa29I	ATCGAT	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	2001
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	6 cut(s)	175, 255, 508, 651, 1233, 1437
Bsc4I	CCNNNNNNNGG	4 cut(s)	624, 1442, 1443, 1711
Bse118I	RCCGGY	2 cut(s)	4, 1661
Bse1I	ACTGG	6 cut(s)	1001, 1105, 1744, 1792, 1827, 2050
Bse8I	GATNNNNATC	1 cut(s)	2001
BseBI	CCWGG	2 cut(s)	1533, 1932
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	6 cut(s)	175, 255, 508, 651, 1233, 1437
BseGI	GGATG	8 cut(s)	170, 984, 1174, 1243, 1279, 1408, 1945, 1960
BseJI	GATNNNNATC	1 cut(s)	2001
BseLI	CCNNNNNNNGG	4 cut(s)	624, 1442, 1443, 1711
BseMII	CTCAG	5 cut(s)	170, 346, 1148, 1179, 1713
BseNI	ACTGG	6 cut(s)	1001, 1105, 1744, 1792, 1827, 2050
BseRI	GAGGAG	2 cut(s)	1089, 1239
BseSI	GKGCMC	1 cut(s)	1056
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	6 cut(s)	123, 420, 469, 1555, 1762, 1897
BseYI	CCCAGC	1 cut(s)	1799
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	8 cut(s)	8, 611, 791, 835, 1054, 1232, 1536, 2105
BshNI	GGYRCC	2 cut(s)	251, 1664
BshVI	ATCGAT	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	3 cut(s)	5, 862, 1662
BslFI	GGGAC	3 cut(s)	122, 273, 856
BslI	CCNNNNNNNGG	4 cut(s)	624, 1442, 1443, 1711
BsmAI	GTCTC	3 cut(s)	895, 1137, 1429
BsmFI	GGGAC	3 cut(s)	122, 273, 856
BsnI	GGCC	8 cut(s)	8, 611, 791, 835, 1054, 1232, 1536, 2105
BsoBI	CYCGRG	1 cut(s)	256
Bsp120I	GGGCCC	1 cut(s)	1052
Bsp1286I	GDGCHC	3 cut(s)	192, 745, 1056
Bsp143I	GATC	2 cut(s)	976, 1348
Bsp19I	CCATGG	1 cut(s)	508
BspANI	GGCC	8 cut(s)	8, 611, 791, 835, 1054, 1232, 1536, 2105
BspCNI	CTCAG	5 cut(s)	169, 345, 1147, 1180, 1714
BspDI	ATCGAT	1 cut(s)	15
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	2 cut(s)	984, 1343
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	2 cut(s)	251, 1664
BsrFI	RCCGGY	2 cut(s)	4, 1661
BsrI	ACTGG	6 cut(s)	1001, 1105, 1744, 1792, 1827, 2050
BssAI	RCCGGY	2 cut(s)	4, 1661
BssECI	CCNNGG	6 cut(s)	175, 255, 508, 651, 1233, 1437
BssMI	GATC	2 cut(s)	976, 1348
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	3 cut(s)	175, 508, 1233
Bst2UI	CCWGG	2 cut(s)	1533, 1932
Bst4CI	ACNGT	5 cut(s)	655, 827, 953, 1153, 1923
Bst6I	CTCTTC	3 cut(s)	180, 213, 1803
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	7 cut(s)	6, 413, 1031, 1290, 1538, 1641, 1755
BstDEI	CTNAG	6 cut(s)	156, 332, 1134, 1188, 1722, 1852
BstDSI	CCRYGG	3 cut(s)	508, 651, 1437
BstEII	GGTNACC	1 cut(s)	1576
BstENI	CCTNNNNNAGG	1 cut(s)	1709
BstF5I	GGATG	8 cut(s)	170, 984, 1174, 1243, 1279, 1408, 1945, 1960
BstH2I	RGCGCY	2 cut(s)	255, 1760
BstHHI	GCGC	4 cut(s)	254, 1462, 1759, 1851
BstKTI	GATC	2 cut(s)	979, 1351
BstMAI	GTCTC	3 cut(s)	895, 1137, 1429
BstMBI	GATC	2 cut(s)	976, 1348
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	6 cut(s)	617, 1026, 1756, 1823, 1865, 2006
BstNI	CCWGG	2 cut(s)	1533, 1932
BstNSI	RCATGY	3 cut(s)	595, 1124, 1477
BstPI	GGTNACC	1 cut(s)	1576
BstSCI	CCNGG	3 cut(s)	861, 1531, 1930
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	1056
BstV1I	GCAGC	6 cut(s)	123, 420, 469, 1555, 1762, 1897
BstX2I	RGATCY	1 cut(s)	976
BstXI	CCANNNNNNTGG	2 cut(s)	1296, 1799
BstYI	RGATCY	1 cut(s)	976
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	8 cut(s)	8, 611, 791, 835, 1054, 1232, 1536, 2105
BsuTUI	ATCGAT	1 cut(s)	15
BtgI	CCRYGG	3 cut(s)	508, 651, 1437
BtgZI	GCGATG	1 cut(s)	1529
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	8 cut(s)	170, 984, 1174, 1243, 1279, 1408, 1945, 1960
BtsIMutI	CAGTG	2 cut(s)	340, 994
Cac8I	GCNNGC	7 cut(s)	6, 413, 1031, 1290, 1538, 1641, 1755
CaiI	CAGNNNCTG	1 cut(s)	1910
CfoI	GCGC	4 cut(s)	254, 1462, 1759, 1851
Cfr10I	RCCGGY	2 cut(s)	4, 1661
Cfr13I	GGNCC	8 cut(s)	328, 714, 789, 1052, 1053, 1230, 1299, 2091
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	5 cut(s)	77, 967, 1489, 1535, 1903
Csp6I	GTAC	6 cut(s)	207, 665, 828, 1118, 1451, 2043
CviAII	CATG	6 cut(s)	370, 509, 554, 592, 1121, 1474
CviQI	GTAC	6 cut(s)	207, 665, 828, 1118, 1451, 2043
DdeI	CTNAG	6 cut(s)	156, 332, 1134, 1188, 1722, 1852
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	2 cut(s)	978, 1350
DpnII	GATC	2 cut(s)	976, 1348
DrdI	GACNNNNNNGTC	1 cut(s)	1403
DriI	GACNNNNNGTC	2 cut(s)	46, 1792
DseDI	GACNNNNNNGTC	1 cut(s)	1403
EaeI	YGGCCR	2 cut(s)	6, 1534
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	3 cut(s)	180, 213, 1803
Eam1105I	GACNNNNNGTC	2 cut(s)	46, 1792
EarI	CTCTTC	3 cut(s)	180, 213, 1803
EciI	GGCGGA	5 cut(s)	674, 1086, 1232, 1324, 1799
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	175, 508, 1233
Eco24I	GRGCYC	2 cut(s)	745, 1056
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	4 cut(s)	328, 714, 1299, 2091
Eco52I	CGGCCG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	1576
EcoNI	CCTNNNNNAGG	1 cut(s)	1709
EcoO109I	RGGNCCY	3 cut(s)	328, 1052, 2091
EcoO65I	GGTNACC	1 cut(s)	1576
EcoRII	CCWGG	2 cut(s)	1531, 1930
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	3 cut(s)	175, 508, 1233
EcoT38I	GRGCYC	2 cut(s)	745, 1056
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	3 cut(s)	175, 508, 1233
FaeI	CATG	6 cut(s)	373, 512, 557, 595, 1124, 1477
FaqI	GGGAC	3 cut(s)	122, 273, 856
FatI	CATG	6 cut(s)	369, 508, 553, 591, 1120, 1473
FblI	GTMKAC	2 cut(s)	351, 733
FokI	GGATG	8 cut(s)	157, 971, 1181, 1250, 1286, 1415, 1952, 1967
FriOI	GRGCYC	2 cut(s)	745, 1056
FspBI	CTAG	4 cut(s)	210, 440, 534, 738
GlaI	GCGC	4 cut(s)	253, 1461, 1758, 1850
GsaI	CCCAGC	1 cut(s)	1803
GsuI	CTGGAG	2 cut(s)	776, 1133
HaeII	RGCGCY	2 cut(s)	255, 1760
HaeIII	GGCC	8 cut(s)	8, 611, 791, 835, 1054, 1232, 1536, 2105
HapII	CCGG	3 cut(s)	5, 862, 1662
HgaI	GACGC	5 cut(s)	77, 967, 1489, 1535, 1903
HhaI	GCGC	4 cut(s)	254, 1462, 1759, 1851
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	6 cut(s)	373, 512, 557, 595, 1124, 1477
Hin6I	GCGC	4 cut(s)	252, 1460, 1757, 1849
HinP1I	GCGC	4 cut(s)	252, 1460, 1757, 1849
HincII	GTYRAC	4 cut(s)	684, 734, 1698, 2022
HindII	GTYRAC	4 cut(s)	684, 734, 1698, 2022
HindIII	AAGCTT	1 cut(s)	1598
HinfI	GANTC	7 cut(s)	35, 494, 770, 1024, 1163, 1733, 2011
HpaII	CCGG	3 cut(s)	5, 862, 1662
Hpy166II	GTNNAC	6 cut(s)	352, 684, 734, 1698, 1926, 2022
Hpy188I	TCNGA	8 cut(s)	40, 472, 900, 1168, 1429, 1902, 1996, 2016
Hpy188III	TCNNGA	9 cut(s)	258, 306, 755, 767, 1112, 1136, 1346, 1891, 2059
Hpy8I	GTNNAC	6 cut(s)	352, 684, 734, 1698, 1926, 2022
Hpy99I	CGWCG	5 cut(s)	207, 735, 2020, 2070, 2073
HpyAV	CCTTC	8 cut(s)	287, 369, 467, 1360, 1618, 1622, 1711, 1831
HpyCH4III	ACNGT	5 cut(s)	655, 827, 953, 1153, 1923
HpyCH4IV	ACGT	5 cut(s)	42, 782, 1620, 2018, 2065
HpyCH4V	TGCA	5 cut(s)	104, 553, 801, 946, 1750
HpyF10VI	GCNNNNNNNGC	6 cut(s)	617, 1026, 1756, 1823, 1865, 2006
HpyF3I	CTNAG	6 cut(s)	156, 332, 1134, 1188, 1722, 1852
HpySE526I	ACGT	5 cut(s)	42, 782, 1620, 2018, 2065
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	6 cut(s)	373, 512, 557, 595, 1124, 1477
HspAI	GCGC	4 cut(s)	252, 1460, 1757, 1849
KasI	GGCGCC	1 cut(s)	251
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	976, 1348
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	757
Lsp1109I	GCAGC	6 cut(s)	123, 420, 469, 1555, 1762, 1897
LweI	GCATC	5 cut(s)	179, 993, 1264, 1897, 1987
MaeI	CTAG	4 cut(s)	210, 440, 534, 738
MaeII	ACGT	5 cut(s)	42, 782, 1620, 2018, 2065
MaeIII	GTNAC	5 cut(s)	89, 159, 805, 1394, 1576
MalI	GATC	2 cut(s)	978, 1350
MboI	GATC	2 cut(s)	976, 1348
MflI	RGATCY	1 cut(s)	976
MhlI	GDGCHC	3 cut(s)	192, 745, 1056
MlsI	TGGCCA	1 cut(s)	1536
MluCI	AATT	8 cut(s)	55, 194, 428, 518, 644, 908, 1323, 1631
MluNI	TGGCCA	1 cut(s)	1536
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	3 cut(s)	1018, 1172, 2005
MmeI	TCCRAC	7 cut(s)	42, 450, 878, 935, 1146, 1452, 2039
Mox20I	TGGCCA	1 cut(s)	1536
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	2 cut(s)	151, 1325
MscI	TGGCCA	1 cut(s)	1536
MseI	TTAA	4 cut(s)	54, 279, 720, 1872
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	1536
MspA1I	CMGCKG	2 cut(s)	1304, 1540
MspI	CCGG	3 cut(s)	5, 862, 1662
MspR9I	CCNGG	3 cut(s)	863, 1533, 1932
MvaI	CCWGG	2 cut(s)	1533, 1932
MwoI	GCNNNNNNNGC	6 cut(s)	617, 1026, 1756, 1823, 1865, 2006
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	863
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	2 cut(s)	976, 1348
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	6 cut(s)	373, 512, 557, 595, 1124, 1477
NmuCI	GTSAC	4 cut(s)	89, 159, 1394, 1576
NspI	RCATGY	3 cut(s)	595, 1124, 1477
OliI	CACNNNNGTG	1 cut(s)	510
PciI	ACATGT	1 cut(s)	591
PciSI	GCTCTTC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	3 cut(s)	56, 998, 1335
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	2 cut(s)	151, 1325
PfeI	GAWTC	4 cut(s)	35, 494, 770, 1733
PflFI	GACNNNGTC	1 cut(s)	1607
PleI	GAGTC	3 cut(s)	1018, 1171, 2005
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	3 cut(s)	1018, 1171, 2005
PpuMI	RGGWCCY	2 cut(s)	328, 2091
PscI	ACATGT	1 cut(s)	591
Psp5II	RGGWCCY	2 cut(s)	328, 2091
Psp6I	CCWGG	2 cut(s)	1531, 1930
PspEI	GGTNACC	1 cut(s)	1576
PspFI	CCCAGC	1 cut(s)	1799
PspGI	CCWGG	2 cut(s)	1531, 1930
PspOMI	GGGCCC	1 cut(s)	1052
PspPI	GGNCC	8 cut(s)	328, 714, 789, 1052, 1053, 1230, 1299, 2091
PspPPI	RGGWCCY	2 cut(s)	328, 2091
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	1910
PsuI	RGATCY	1 cut(s)	976
PsyI	GACNNNGTC	1 cut(s)	1607
RsaI	GTAC	6 cut(s)	208, 666, 829, 1119, 1452, 2044
RsaNI	GTAC	6 cut(s)	207, 665, 828, 1118, 1451, 2043
RseI	CAYNNNNRTG	1 cut(s)	510
SalI	GTCGAC	1 cut(s)	732
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	54, 279, 720, 1872
Sau3AI	GATC	2 cut(s)	976, 1348
Sau96I	GGNCC	8 cut(s)	328, 714, 789, 1052, 1053, 1230, 1299, 2091
ScaI	AGTACT	1 cut(s)	666
SchI	GAGTC	3 cut(s)	1018, 1172, 2005
ScrFI	CCNGG	3 cut(s)	863, 1533, 1932
SduI	GDGCHC	3 cut(s)	192, 745, 1056
SfaNI	GCATC	5 cut(s)	179, 993, 1264, 1897, 1987
SfcI	CTRYAG	1 cut(s)	102
SfoI	GGCGCC	1 cut(s)	253
SinI	GGWCC	4 cut(s)	328, 714, 1299, 2091
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	8 cut(s)	55, 194, 428, 518, 644, 908, 1323, 1631
SspDI	GGCGCC	1 cut(s)	251
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	4 cut(s)	210, 440, 534, 738
StyD4I	CCNGG	3 cut(s)	861, 1531, 1930
StyI	CCWWGG	3 cut(s)	175, 508, 1233
TaaI	ACNGT	5 cut(s)	655, 827, 953, 1153, 1923
TaiI	ACGT	5 cut(s)	45, 785, 1623, 2021, 2068
TaqI	TCGA	7 cut(s)	15, 228, 733, 921, 1355, 1944, 2058
TasI	AATT	8 cut(s)	55, 194, 428, 518, 644, 908, 1323, 1631
TatI	WGTACW	1 cut(s)	664
TauI	GCSGC	4 cut(s)	439, 794, 1312, 1543
TfiI	GAWTC	4 cut(s)	35, 494, 770, 1733
Tru1I	TTAA	4 cut(s)	54, 279, 720, 1872
Tru9I	TTAA	4 cut(s)	54, 279, 720, 1872
TscAI	CASTG	2 cut(s)	340, 1001
TseFI	GTSAC	4 cut(s)	89, 159, 1394, 1576
TseI	GCWGC	6 cut(s)	111, 433, 482, 1543, 1750, 1910
Tsp45I	GTSAC	4 cut(s)	89, 159, 1394, 1576
TspDTI	ATGAA	5 cut(s)	198, 410, 1001, 1107, 1379
TspRI	CASTG	2 cut(s)	340, 1001
Tth111I	GACNNNGTC	1 cut(s)	1607
VpaK11BI	GGWCC	4 cut(s)	328, 714, 1299, 2091
XagI	CCTNNNNNAGG	1 cut(s)	1709
XapI	RAATTY	3 cut(s)	644, 1323, 1631
XceI	RCATGY	3 cut(s)	595, 1124, 1477
XmiI	GTMKAC	2 cut(s)	351, 733
XmnI	GAANNNNTTC	2 cut(s)	151, 1325
XspI	CTAG	4 cut(s)	210, 440, 534, 738
ZrmI	AGTACT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.