Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003651.1

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

5232 .. 7313

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgctttcaattcaatggcgaggtcattcgtgcgagtttcgttttgtccgagcgcaatttcgattcaactcagatgctttctcttatctactgacggagagttcgcgtcttgggtcagttctcaacctctttttgcttggttctgttttgggcttcttgtttttactggtagattggcgcaggcctctggccttgccggttagggttgttgaccctctgggtttggggatggagacggtgggaatacaggctcgggtgttgatcttcttcatggaattgggaatgcgagctttgtgtttgtggtggtgggtgatgtgtggtcaacgacgattggggtccagtatcggcagcgacatgtcgaccctggtggtggctcttgtttggacctcaattcatggcctttttttttgtggcaggtctgttcagctcactttcgcgacgaaagagattgatgtaacggaatggaaagggtacctacttgcggttggtgttacagagaaggacttgaggaaagatcagaactcaatattagaaaatccgatattgaagaagctggattcttgtttgggtggggtgttggctgaggtctcgactaaggaggacttcacaagaaatggtggctacaacatcaagacaggatttggctgttcaattgagcttatgaaggttgatatgggaggttcagcagctgtattaggtgcagcaaaagccattggtcaaatcaaaccttctggtgtagaggttcatttcattgtcgcagcttgtgagaatatgataagtggaacaggtatgaggcctggggacattgtcacagcttctaatggaaagaccattgaggtcaataacacagatgctgaaggcagactgactttggcagatgcattagtatatgcatctgggattccgcatgttttggatcttatgttagaatcagacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

313

Amino Acids

34.26

Weight (kDa)

6.12

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	206 - 299	5e-36	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	405
Acc65I	GGTACC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	2 cut(s)	106, 437
AciI	CCGC	2 cut(s)	482, 905
AclWI	GGATC	1 cut(s)	924
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	2 cut(s)	370, 481
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	9, 14, 67, 547, 651
AjnI	CCWGG	2 cut(s)	363, 796
AluBI	AGCT	7 cut(s)	290, 427, 553, 658, 689, 761, 815
AluI	AGCT	7 cut(s)	290, 427, 553, 658, 689, 761, 815
Alw26I	GTCTC	2 cut(s)	227, 592
AlwI	GGATC	1 cut(s)	924
AlwNI	CAGNNNCTG	2 cut(s)	689, 854
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	4 cut(s)	182, 189, 397, 794
ApeKI	GCWGC	4 cut(s)	348, 686, 701, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
Asp718I	GGTACC	1 cut(s)	471
AspLEI	GCGC	2 cut(s)	55, 180
AspS9I	GGNCC	2 cut(s)	336, 384
AsuHPI	GGTGA	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	336, 384
BanI	GGYRCC	1 cut(s)	471
BbvCI	CCTCAGC	1 cut(s)	582
BbvI	GCAGC	4 cut(s)	360, 698, 713, 770
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	365, 798
BcoDI	GTCTC	2 cut(s)	227, 592
BfuAI	ACCTGC	1 cut(s)	405
BisI	GCNGC	4 cut(s)	349, 687, 702, 759
BlsI	GCNGC	4 cut(s)	350, 688, 703, 760
Bme1390I	CCNGG	2 cut(s)	365, 798
Bme18I	GGWCC	2 cut(s)	336, 384
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	336, 384
BmiI	GGNNCC	2 cut(s)	337, 473
BmrFI	CCNGG	2 cut(s)	365, 798
BmsI	GCATC	4 cut(s)	64, 841, 868, 902
Bpu10I	CCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	2 cut(s)	363, 797
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 481
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	171, 339
BseBI	CCWGG	2 cut(s)	365, 798
BseDI	CCNNGG	2 cut(s)	363, 797
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	370, 481
BseMII	CTCAG	2 cut(s)	84, 573
BseNI	ACTGG	2 cut(s)	171, 339
BseXI	GCAGC	4 cut(s)	360, 698, 713, 770
BsgI	GTGCAG	1 cut(s)	720
Bsh1236I	CGCG	2 cut(s)	106, 437
BshFI	GGCC	4 cut(s)	184, 191, 399, 796
BshNI	GGYRCC	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	2 cut(s)	370, 481
BsmAI	GTCTC	2 cut(s)	227, 592
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	815
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	184, 191, 399, 796
Bso31I	GGTCTC	1 cut(s)	592
BsoBI	CYCGRG	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	261, 514, 916
Bsp68I	TCGCGA	1 cut(s)	437
BspACI	CCGC	2 cut(s)	482, 905
BspANI	GGCC	4 cut(s)	184, 191, 399, 796
BspCNI	CTCAG	2 cut(s)	83, 574
BspFNI	CGCG	2 cut(s)	106, 437
BspLI	GGNNCC	2 cut(s)	337, 473
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	1 cut(s)	924
BspT107I	GGYRCC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	171, 339
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	363, 797
BssMI	GATC	3 cut(s)	261, 514, 916
Bst2UI	CCWGG	2 cut(s)	365, 798
Bst4CI	ACNGT	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	182, 288
BstDEI	CTNAG	3 cut(s)	70, 582, 594
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	2 cut(s)	106, 437
BstHHI	GCGC	2 cut(s)	55, 180
BstKTI	GATC	3 cut(s)	264, 517, 919
BstMAI	GTCTC	2 cut(s)	227, 592
BstMBI	GATC	3 cut(s)	261, 514, 916
BstMWI	GCNNNNNNNGC	1 cut(s)	707
BstNI	CCWGG	2 cut(s)	365, 798
BstNSI	RCATGY	2 cut(s)	358, 911
BstSCI	CCNGG	2 cut(s)	363, 796
BstUI	CGCG	2 cut(s)	106, 437
BstV1I	GCAGC	4 cut(s)	360, 698, 713, 770
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
BsuRI	GGCC	4 cut(s)	184, 191, 399, 796
BtsCI	GGATG	1 cut(s)	234
BtuMI	TCGCGA	1 cut(s)	437
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	182, 288
CaiI	CAGNNNCTG	2 cut(s)	689, 854
CfoI	GCGC	2 cut(s)	55, 180
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	336, 384
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	4 cut(s)	271, 355, 395, 908
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	3 cut(s)	70, 582, 594
DpnI	GATC	3 cut(s)	263, 516, 918
DpnII	GATC	3 cut(s)	261, 514, 916
Eco147I	AGGCCT	2 cut(s)	184, 796
Eco31I	GGTCTC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	336, 384
Eco57I	CTGAAG	1 cut(s)	876
Eco88I	CYCGRG	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	363, 796
EcoT22I	ATGCAT	2 cut(s)	883, 895
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	274, 358, 398, 911
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FaqI	GGGAC	1 cut(s)	815
FatI	CATG	4 cut(s)	270, 354, 394, 907
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	4 cut(s)	349, 687, 702, 759
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	4 cut(s)	349, 687, 702, 759
GlaI	GCGC	2 cut(s)	54, 179
GluI	GCNGC	4 cut(s)	349, 687, 702, 759
HaeIII	GGCC	4 cut(s)	184, 191, 399, 796
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	2 cut(s)	55, 180
Hin1II	CATG	4 cut(s)	274, 358, 398, 911
Hin6I	GCGC	2 cut(s)	53, 178
HinP1I	GCGC	2 cut(s)	53, 178
HincII	GTYRAC	3 cut(s)	211, 323, 360
HindII	GTYRAC	3 cut(s)	211, 323, 360
HinfI	GANTC	4 cut(s)	63, 557, 901, 929
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	3 cut(s)	211, 323, 360
Hpy188I	TCNGA	6 cut(s)	50, 73, 519, 540, 934, 941
Hpy188III	TCNNGA	3 cut(s)	436, 589, 631
Hpy8I	GTNNAC	3 cut(s)	211, 323, 360
Hpy99I	CGWCG	2 cut(s)	330, 442
HpyAV	CCTTC	4 cut(s)	493, 658, 738, 851
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	701, 881, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	707
HpyF3I	CTNAG	3 cut(s)	70, 582, 594
Hsp92II	CATG	4 cut(s)	274, 358, 398, 911
HspAI	GCGC	2 cut(s)	53, 178
KpnI	GGTACC	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	261, 514, 916
Lsp1109I	GCAGC	4 cut(s)	360, 698, 713, 770
LweI	GCATC	4 cut(s)	64, 841, 868, 902
MaeIII	GTNAC	3 cut(s)	454, 490, 808
MalI	GATC	3 cut(s)	263, 516, 918
MboI	GATC	3 cut(s)	261, 514, 916
MboII	GAAGA	3 cut(s)	256, 259, 559
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	916
MluCI	AATT	5 cut(s)	9, 56, 275, 390, 651
Mph1103I	ATGCAT	2 cut(s)	883, 895
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	365, 798
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	2 cut(s)	365, 798
MvnI	CGCG	2 cut(s)	106, 437
MwoI	GCNNNNNNNGC	1 cut(s)	707
NdeII	GATC	3 cut(s)	261, 514, 916
NlaIII	CATG	4 cut(s)	274, 358, 398, 911
NlaIV	GGNNCC	2 cut(s)	337, 473
NmuCI	GTSAC	1 cut(s)	808
NruI	TCGCGA	1 cut(s)	437
NsiI	ATGCAT	2 cut(s)	883, 895
NspI	RCATGY	2 cut(s)	358, 911
PceI	AGGCCT	2 cut(s)	184, 796
PciI	ACATGT	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PctI	GAATGC	1 cut(s)	288
PfeI	GAWTC	4 cut(s)	63, 557, 901, 929
PflFI	GACNNNGTC	1 cut(s)	806
PkrI	GCNGC	4 cut(s)	350, 688, 703, 760
PscI	ACATGT	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	363, 796
PspGI	CCWGG	2 cut(s)	363, 796
PspN4I	GGNNCC	2 cut(s)	337, 473
PspPI	GGNCC	2 cut(s)	336, 384
PstNI	CAGNNNCTG	2 cut(s)	689, 854
PsuI	RGATCY	1 cut(s)	916
PsyI	GACNNNGTC	1 cut(s)	806
PvuII	CAGCTG	1 cut(s)	689
RruI	TCGCGA	1 cut(s)	437
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SalI	GTCGAC	1 cut(s)	358
SatI	GCNGC	4 cut(s)	349, 687, 702, 759
Sau3AI	GATC	3 cut(s)	261, 514, 916
Sau96I	GGNCC	2 cut(s)	336, 384
ScrFI	CCNGG	2 cut(s)	365, 798
SfaNI	GCATC	4 cut(s)	64, 841, 868, 902
SinI	GGWCC	2 cut(s)	336, 384
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	5 cut(s)	9, 56, 275, 390, 651
SseBI	AGGCCT	2 cut(s)	184, 796
SsiI	CCGC	2 cut(s)	482, 905
SspI	AATATT	1 cut(s)	528
StuI	AGGCCT	2 cut(s)	184, 796
StyD4I	CCNGG	2 cut(s)	363, 796
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	61, 359, 590
TasI	AATT	5 cut(s)	9, 56, 275, 390, 651
TfiI	GAWTC	4 cut(s)	63, 557, 901, 929
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	4 cut(s)	348, 686, 701, 758
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	5 cut(s)	259, 383, 677, 734, 739
TspGWI	ACGGA	2 cut(s)	110, 473
Tth111I	GACNNNGTC	1 cut(s)	806
VpaK11BI	GGWCC	2 cut(s)	336, 384
XceI	RCATGY	2 cut(s)	358, 911
XmiI	GTMKAC	1 cut(s)	359
Zsp2I	ATGCAT	2 cut(s)	883, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.