Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000400.1

Orthogroup ID

OG0002406

Physical Location & Seq

Genomic Coordinates Forward (+)

253127 .. 256161

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgtgtggaaacttcttaacagaagctgagggaagcccaaatgaacgcgctcgaggagtcgaggacgcggtggattcggactcggtgtctcagccgcagaggatagatagcggcttgagtcagagcttgatcggaatggcaccaccaccagcagctattttcaaccaggagaagttgcgtgttgcactgctgagtatctgtgcacgataccaatttattaacgacaatctagatctagatagtcaggacgaggaacatacagagacaacagagcaagcaaatgttcctagcaggtattactgctatcagtgtcgtcaagtggtcggtgtcactgtggacgtcgaaattacatgccctctctgccatggcggctggatacaggaatatggtagcgctaacttactctatgttagtgtgccatcagaatccaagcattctgctagtgattctgatgggcaaggcaccattccggtcaatccttccggtcaaacctccaacagctatggttcagatcccaccctcaacaggtccccttttcatatcactgcgaacggttacagtaacgttcaaatttcccatgcttcccatgccgagtcacaccaggcaacgggccattctgattcgagtttggaacagggatttctatctgttgatgctaaccagcggacaagggtaactgcatcagactggatctgttcagccgttggtttagccattgaggctttatcggcatttttcgatcaggtttccaccccagagacgcctcaatactcattgtatggcatgctgttgtccatcacatctgtaccttaccctagccatcaccaacaccccaccgccgttgcaccgctgacatcgtcgaccctccaccagcttcaatccaacctggcggtaccaccatcgttgcaccgcccgctatggtcgttgcctatcaacactactttatctagagcacatacacggaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

322

Amino Acids

34.86

Weight (kDa)

5.07

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	97 - 129	3.2e-07	zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002406)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214900.v1.1 MD11G1217900.v1.1 MD11G1218100.v1.1
pyrus_communis	pycom11g19170 pycom11g19190
rosa_chinensis	RchiOBHm_Chr5g0039451 RchiOBHm_Chr5g0039471
rosa_laevigata	RLG00000033916 RLG00000033918 RLG00000033920 RLG00000033921
rosa_multiflora	Rmu_sc0001204.1_g000002 Rmu_sc0001204.1_g000020 Rmu_ssc0000400.1_g000036 Rmu_ssc0000400.1_g000064
rosa_roxburghii	Rroxscaffold_1G00040590 Rroxscaffold_1G00040650 Rroxscaffold_1G00040670 Rroxscaffold_1G00040680 Rroxscaffold_1G00040700 Rroxscaffold_1G00041680 Rroxscaffold_1G00041690 Rroxscaffold_1G00041700 Rroxscaffold_1G00041750
rosa_rugosa	Rorug05G0179200 Rorug05G0179300 Rorug05G0179400 Rorug05G0179500 Rorug05G0179700 Rorug05G0179800
rosa_samantha	Rh5AG266100 Rh5AG266200 Rh5AG266500 Rh5AG266700 Rh5AG267000 Rh5BG270800 Rh5CG303600 Rh5DG278600 Rh5DG278700
rosa_wichuraiana	Rw0G005680 Rw5G024940 Rw5G024950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	282
Acc65I	GGTACC	1 cut(s)	892
AccB1I	GGYRCC	3 cut(s)	139, 461, 892
AccI	GTMKAC	1 cut(s)	860
AccII	CGCG	2 cut(s)	48, 68
AclI	AACGTT	1 cut(s)	564
AclWI	GGATC	2 cut(s)	506, 698
AcsI	RAATTY	1 cut(s)	570
AcyI	GRCGYC	2 cut(s)	339, 761
AfaI	GTAC	2 cut(s)	807, 894
AfeI	AGCGCT	1 cut(s)	394
AfiI	CCNNNNNNNGG	2 cut(s)	525, 607
AgsI	TTSAA	3 cut(s)	163, 569, 878
AhdI	GACNNNNNGTC	1 cut(s)	85
AjnI	CCWGG	3 cut(s)	165, 600, 885
AluBI	AGCT	5 cut(s)	26, 126, 155, 501, 874
AluI	AGCT	5 cut(s)	26, 126, 155, 501, 874
Alw21I	GWGCWC	2 cut(s)	205, 955
Alw26I	GTCTC	3 cut(s)	93, 257, 752
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	506, 698
AlwNI	CAGNNNCTG	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	51
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	1 cut(s)	610
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	570
Asp718I	GGTACC	1 cut(s)	892
AspLEI	GCGC	2 cut(s)	50, 395
AspS9I	GGNCC	2 cut(s)	528, 610
AsuHPI	GGTGA	1 cut(s)	815
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	528
BaeGI	GKGCMC	1 cut(s)	205
BaeI	ACNNNNGTAYC	2 cut(s)	789, 822
BanI	GGYRCC	3 cut(s)	139, 461, 892
Bbv12I	GWGCWC	2 cut(s)	205, 955
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	5 cut(s)	427, 446, 803, 828, 907
BceAI	ACGGC	2 cut(s)	686, 824
BciT130I	CCWGG	3 cut(s)	167, 602, 887
BciVI	GTATCC	1 cut(s)	369
BcoDI	GTCTC	3 cut(s)	93, 257, 752
BfaI	CTAG	6 cut(s)	230, 236, 288, 441, 816, 948
BfoI	RGCGCY	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	369
BglI	GCCNNNNNGGC	2 cut(s)	369, 719
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	4 cut(s)	95, 112, 153, 370
BlsI	GCNGC	4 cut(s)	96, 113, 154, 371
Bme1390I	CCNGG	3 cut(s)	167, 602, 887
Bme18I	GGWCC	1 cut(s)	528
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	528, 610
BmiI	GGNNCC	4 cut(s)	141, 463, 530, 894
BmrFI	CCNGG	3 cut(s)	167, 602, 887
BmsI	GCATC	2 cut(s)	643, 689
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	643
BsaHI	GRCGYC	2 cut(s)	339, 761
BsaJI	CCNNGG	1 cut(s)	364
BsaWI	WCCGGW	2 cut(s)	469, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 607
Bse1I	ACTGG	1 cut(s)	692
Bse8I	GATNNNNATC	1 cut(s)	643
BseBI	CCWGG	3 cut(s)	167, 602, 887
BseDI	CCNNGG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	643
BseLI	CCNNNNNNNGG	2 cut(s)	525, 607
BseMII	CTCAG	3 cut(s)	18, 104, 182
BseNI	ACTGG	1 cut(s)	692
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	48, 68
BshFI	GGCC	1 cut(s)	612
BshNI	GGYRCC	3 cut(s)	139, 461, 892
BsiHKAI	GWGCWC	2 cut(s)	205, 955
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	470, 483
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	2 cut(s)	525, 607
BsmAI	GTCTC	3 cut(s)	93, 257, 752
BsmBI	CGTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	514
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	612
BsoBI	CYCGRG	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	205, 955
Bsp143I	GATC	5 cut(s)	129, 232, 511, 690, 739
Bsp19I	CCATGG	1 cut(s)	364
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	3 cut(s)	19, 103, 183
BspFNI	CGCG	2 cut(s)	48, 68
BspLI	GGNNCC	4 cut(s)	141, 463, 530, 894
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	506, 698
BspT107I	GGYRCC	3 cut(s)	139, 461, 892
BsrI	ACTGG	1 cut(s)	692
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	5 cut(s)	129, 232, 511, 690, 739
BssNI	GRCGYC	2 cut(s)	339, 761
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	3 cut(s)	167, 602, 887
Bst4CI	ACNGT	3 cut(s)	334, 554, 560
BstACI	GRCGYC	2 cut(s)	339, 761
BstC8I	GCNNGC	3 cut(s)	276, 785, 914
BstDEI	CTNAG	3 cut(s)	27, 90, 191
BstDSI	CCRYGG	1 cut(s)	364
BstFNI	CGCG	2 cut(s)	48, 68
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	2 cut(s)	50, 395
BstKTI	GATC	5 cut(s)	132, 235, 514, 693, 742
BstMAI	GTCTC	3 cut(s)	93, 257, 752
BstMBI	GATC	5 cut(s)	129, 232, 511, 690, 739
BstMWI	GCNNNNNNNGC	6 cut(s)	360, 369, 587, 719, 728, 913
BstNI	CCWGG	3 cut(s)	167, 602, 887
BstNSI	RCATGY	2 cut(s)	354, 787
BstSCI	CCNGG	3 cut(s)	165, 600, 885
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	2 cut(s)	48, 68
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	3 cut(s)	232, 511, 690
BstYI	RGATCY	3 cut(s)	232, 511, 690
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	364
BtsI	GCAGTG	2 cut(s)	185, 543
BtsIMutI	CAGTG	4 cut(s)	185, 314, 330, 543
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	276, 785, 914
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	2 cut(s)	50, 395
Cfr13I	GGNCC	2 cut(s)	528, 610
CseI	GACGC	2 cut(s)	74, 769
Csp6I	GTAC	2 cut(s)	806, 893
CspCI	CAANNNNNGTGG	4 cut(s)	823, 858, 885, 920
CviAII	CATG	5 cut(s)	351, 365, 578, 587, 784
CviQI	GTAC	2 cut(s)	806, 893
DdeI	CTNAG	3 cut(s)	27, 90, 191
DpnI	GATC	5 cut(s)	131, 234, 513, 692, 741
DpnII	GATC	5 cut(s)	129, 232, 511, 690, 739
DriI	GACNNNNNGTC	1 cut(s)	85
Eam1105I	GACNNNNNGTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	528
Eco47III	AGCGCT	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	528
EcoRII	CCWGG	3 cut(s)	165, 600, 885
EcoT14I	CCWWGG	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	364
Esp3I	CGTCTC	1 cut(s)	752
FaeI	CATG	5 cut(s)	354, 368, 581, 590, 787
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	5 cut(s)	350, 364, 577, 586, 783
FauI	CCCGC	1 cut(s)	921
FblI	GTMKAC	1 cut(s)	860
Fnu4HI	GCNGC	4 cut(s)	95, 112, 153, 370
Fsp4HI	GCNGC	4 cut(s)	95, 112, 153, 370
FspBI	CTAG	6 cut(s)	230, 236, 288, 441, 816, 948
GlaI	GCGC	2 cut(s)	49, 394
GluI	GCNGC	4 cut(s)	95, 112, 153, 370
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	2 cut(s)	470, 483
HgaI	GACGC	2 cut(s)	74, 769
HhaI	GCGC	2 cut(s)	50, 395
Hin1I	GRCGYC	2 cut(s)	339, 761
Hin1II	CATG	5 cut(s)	354, 368, 581, 590, 787
Hin6I	GCGC	2 cut(s)	48, 393
HinP1I	GCGC	2 cut(s)	48, 393
HincII	GTYRAC	1 cut(s)	861
HindII	GTYRAC	1 cut(s)	861
HinfI	GANTC	8 cut(s)	57, 74, 80, 118, 425, 446, 593, 620
HpaII	CCGG	2 cut(s)	470, 483
HphI	GGTGA	1 cut(s)	815
Hpy166II	GTNNAC	3 cut(s)	203, 337, 861
Hpy188I	TCNGA	8 cut(s)	79, 123, 134, 424, 451, 511, 619, 685
Hpy188III	TCNNGA	4 cut(s)	230, 236, 245, 948
Hpy8I	GTNNAC	3 cut(s)	203, 337, 861
Hpy99I	CGWCG	2 cut(s)	344, 862
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	3 cut(s)	334, 554, 560
HpyCH4IV	ACGT	2 cut(s)	339, 564
HpyCH4V	TGCA	5 cut(s)	185, 203, 680, 845, 907
HpyF10VI	GCNNNNNNNGC	6 cut(s)	360, 369, 587, 719, 728, 913
HpyF3I	CTNAG	3 cut(s)	27, 90, 191
HpySE526I	ACGT	2 cut(s)	339, 564
Hsp92I	GRCGYC	2 cut(s)	339, 761
Hsp92II	CATG	5 cut(s)	354, 368, 581, 590, 787
HspAI	GCGC	2 cut(s)	48, 393
KpnI	GGTACC	1 cut(s)	896
Kzo9I	GATC	5 cut(s)	129, 232, 511, 690, 739
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	2 cut(s)	643, 689
MaeI	CTAG	6 cut(s)	230, 236, 288, 441, 816, 948
MaeII	ACGT	2 cut(s)	339, 564
MaeIII	GTNAC	5 cut(s)	328, 554, 560, 594, 673
MalI	GATC	5 cut(s)	131, 234, 513, 692, 741
MboI	GATC	5 cut(s)	129, 232, 511, 690, 739
MflI	RGATCY	3 cut(s)	232, 511, 690
MhlI	GDGCHC	2 cut(s)	205, 955
MluCI	AATT	3 cut(s)	212, 345, 570
MlyI	GAGTC	4 cut(s)	66, 74, 127, 602
MmeI	TCCRAC	2 cut(s)	519, 906
MseI	TTAA	2 cut(s)	17, 219
MspA1I	CMGCKG	2 cut(s)	664, 850
MspI	CCGG	2 cut(s)	470, 483
MspR9I	CCNGG	3 cut(s)	167, 602, 887
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	3 cut(s)	167, 602, 887
MvnI	CGCG	2 cut(s)	48, 68
MwoI	GCNNNNNNNGC	6 cut(s)	360, 369, 587, 719, 728, 913
NcoI	CCATGG	1 cut(s)	364
NdeII	GATC	5 cut(s)	129, 232, 511, 690, 739
NlaIII	CATG	5 cut(s)	354, 368, 581, 590, 787
NlaIV	GGNNCC	4 cut(s)	141, 463, 530, 894
NmeAIII	GCCGAG	1 cut(s)	616
NmuCI	GTSAC	2 cut(s)	328, 594
NspI	RCATGY	2 cut(s)	354, 787
PaeI	GCATGC	1 cut(s)	787
PaeR7I	CTCGAG	1 cut(s)	51
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	74, 425, 446, 620
PflFI	GACNNNGTC	1 cut(s)	856
PkrI	GCNGC	4 cut(s)	96, 113, 154, 371
PleI	GAGTC	4 cut(s)	65, 74, 126, 601
PpsI	GAGTC	4 cut(s)	65, 74, 126, 601
PpuMI	RGGWCCY	1 cut(s)	528
Psp1406I	AACGTT	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	528
Psp6I	CCWGG	3 cut(s)	165, 600, 885
PspGI	CCWGG	3 cut(s)	165, 600, 885
PspN4I	GGNNCC	4 cut(s)	141, 463, 530, 894
PspPI	GGNCC	2 cut(s)	528, 610
PspPPI	RGGWCCY	1 cut(s)	528
PspXI	VCTCGAGB	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	3 cut(s)	232, 511, 690
PsyI	GACNNNGTC	1 cut(s)	856
RsaI	GTAC	2 cut(s)	807, 894
RsaNI	GTAC	2 cut(s)	806, 893
SalI	GTCGAC	1 cut(s)	859
SaqAI	TTAA	2 cut(s)	17, 219
SatI	GCNGC	4 cut(s)	95, 112, 153, 370
Sau3AI	GATC	5 cut(s)	129, 232, 511, 690, 739
Sau96I	GGNCC	2 cut(s)	528, 610
SchI	GAGTC	4 cut(s)	66, 74, 127, 602
ScrFI	CCNGG	3 cut(s)	167, 602, 887
SduI	GDGCHC	2 cut(s)	205, 955
SfaNI	GCATC	2 cut(s)	643, 689
Sfr274I	CTCGAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	528
SlaI	CTCGAG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	51, 115
SmoI	CTYRAG	2 cut(s)	51, 115
SphI	GCATGC	1 cut(s)	787
Sse9I	AATT	3 cut(s)	212, 345, 570
SspMI	CTAG	6 cut(s)	230, 236, 288, 441, 816, 948
StyD4I	CCNGG	3 cut(s)	165, 600, 885
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	3 cut(s)	334, 554, 560
TaiI	ACGT	2 cut(s)	342, 567
TaqI	TCGA	6 cut(s)	52, 60, 342, 623, 738, 860
TasI	AATT	3 cut(s)	212, 345, 570
TauI	GCSGC	3 cut(s)	97, 114, 372
TfiI	GAWTC	4 cut(s)	74, 425, 446, 620
Tru1I	TTAA	2 cut(s)	17, 219
Tru9I	TTAA	2 cut(s)	17, 219
TscAI	CASTG	4 cut(s)	192, 314, 337, 550
TseFI	GTSAC	2 cut(s)	328, 594
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	2 cut(s)	328, 594
TspDTI	ATGAA	2 cut(s)	57, 527
TspRI	CASTG	4 cut(s)	192, 314, 337, 550
Tth111I	GACNNNGTC	1 cut(s)	856
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	528
XapI	RAATTY	1 cut(s)	570
XbaI	TCTAGA	3 cut(s)	229, 235, 947
XceI	RCATGY	2 cut(s)	354, 787
XhoI	CTCGAG	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	860
XspI	CTAG	6 cut(s)	230, 236, 288, 441, 816, 948
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.