AT1G04710

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001874
Physical Location & Seq
Forward (+)
1321885 .. 1324840
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04710.1

Sequence Viewer

Length: 1332 bp
ATGGAAAAAGCAACGGAGAGACAAAGGATACTGCTTCGTCATCTTCAACCTTCGTCATCTTCCGACGCCTCTCTCTCTGCCTCAGCTTGCTTGTCCAAAGACAGTGCTGCATATCAATATGGAGATGATGTTGTCATTGTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACGTGGCAGCTTCAAGGATACATTTCCAGACGAGTTGCTTGCCTCTGTATTGAGAGCATTGATAGAGAAAACTAATGTAAACCCAAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGGGACCAGGATCTCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCCGAAACTGTTCCCATCAGAACCGTGAACAGACAGTGTTCATCTGGGCTTCAGGCTGTTGCTGATGTTGCCGCTGCCATAAAAGCTGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGAGTCCATGACAACTAATCCAAGGGGATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTTTGAACAAGCTCACAATTGCCTTCTTCCAATGGGTATTACTTCAGAAAATGTAGCACACCGGTTTAATGTTTCAAGGGAGGAGCAGGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGCTTCTGCTACTGCTTCCGGAAAGTTTAAGGATGAGATAACCCCTGTAAAAACCAAGATTGTTGACCCAAAGACAGGTGATGAGAAACCCATAACAGTTTCTGTGGATGATGGGATTCGACCTAACACAACCCTTTCCGGACTTGCAAAGCTGAAGCCAGTGTTTAAGGAAGACGGAACCACAACTGCTGGGAATTCTAGCCAATTAAGTGACGGTGCTGGAGCTGTTCTCCTTATGAGGAGAAATGTCGCAATGCAGAAAGGCCTTCCCATTCTTGGTGTATTCAGGACATTTTCTGCAGTTGGTGTGGACCCAGCCATCATGGGGGTTGGGCCAGCCGTTGCCATTCCTGCTGCAGTCAAGGCAGCTGGTTTAGAACTCAATGACGTCGACTTGTTTGAGATTAACGAGGCATTTGCATCTCAGTTTGTTTATTGTCGGAACAAGCTCGGGCTAGACGCGGAAAAGATCAATGTCAATGGAGGAGCCATAGCCATTGGACATCCCTTGGGCGCTACAGGAGCCAGATGCGTTGCGACGCTGCTGCATGAGATGAAACGACGTGGTAAAGACTGTCGTTTTGGCGTAGTGTCAATGTGTATAGGTTCGGGAATGGGAGCAGCCGCTGTGTTTGAGAGAGGAGGCGGTGTGGATGAGCTCTGTGATGTCCGGAAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

443

Amino Acids

46.61

Weight (kDa)

8.59

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 44 - 298 2.1e-78 Thiolase, N-terminal domain
Thiolase_C PF02803 308 - 430 8.3e-49 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1041
AccI GTMKAC 1 cut(s) 1041
AccII CGCG 2 cut(s) 143, 1112
AccIII TCCGGA 3 cut(s) 668, 788, 1320
AciI CCGC 5 cut(s) 143, 423, 1112, 1275, 1296
AclWI GGATC 3 cut(s) 310, 514, 627
AcsI RAATTY 1 cut(s) 844
AcuI CTGAAG 3 cut(s) 386, 558, 824
AcyI GRCGYC 2 cut(s) 66, 1038
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 3 cut(s) 725, 926, 975
AgeI ACCGGT 1 cut(s) 591
AgsI TTSAA 4 cut(s) 47, 187, 536, 606
AjiI CACGTC 1 cut(s) 1214
AjnI CCWGG 1 cut(s) 298
Alw21I GWGCWC 1 cut(s) 1311
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 3 cut(s) 310, 514, 627
AlwNI CAGNNNCTG 2 cut(s) 752, 1277
Ama87I CYCGRG 1 cut(s) 1100
Aor13HI TCCGGA 3 cut(s) 668, 788, 1320
AoxI GGCC 2 cut(s) 913, 983
ApoI RAATTY 1 cut(s) 844
ArsI GACNNNNNNTTYG 2 cut(s) 1214, 1246
AsiGI ACCGGT 1 cut(s) 591
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 1166
AspS9I GGNCC 3 cut(s) 296, 961, 983
AsuHPI GGTGA 2 cut(s) 281, 740
AvaI CYCGRG 1 cut(s) 1100
AvaII GGWCC 2 cut(s) 296, 961
BanII GRGCYC 1 cut(s) 1311
BbsI GAAGAC 1 cut(s) 828
Bbv12I GWGCWC 1 cut(s) 1311
BbvCI CCTCAGC 1 cut(s) 82
BccI CCATC 5 cut(s) 322, 374, 492, 755, 977
BceAI ACGGC 1 cut(s) 974
BcgI CGANNNNNNTGC 6 cut(s) 194, 228, 1049, 1083, 1177, 1211
BciT130I CCWGG 1 cut(s) 300
BciVI GTATCC 2 cut(s) 21, 184
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 2 cut(s) 849, 1106
BfmI CTRYAG 3 cut(s) 948, 1005, 1167
BfoI RGCGCY 1 cut(s) 1167
BfuI GTATCC 2 cut(s) 21, 184
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 2 cut(s) 296, 961
BmeT110I CYCGRG 1 cut(s) 1100
BmgBI CACGTC 1 cut(s) 1214
BmgT120I GGNCC 3 cut(s) 296, 961, 983
BmiI GGNNCC 5 cut(s) 297, 829, 963, 1138, 1174
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 2 cut(s) 1079, 1169
BpiI GAAGAC 1 cut(s) 828
BplI GAGNNNNNCTC 2 cut(s) 864, 896
BpmI CTGGAG 2 cut(s) 491, 891
Bpu10I CCTNAGC 1 cut(s) 82
BsaHI GRCGYC 2 cut(s) 66, 1038
BsaJI CCNNGG 2 cut(s) 491, 1158
BsaWI WCCGGW 4 cut(s) 591, 668, 788, 1320
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 1284, 1314
Bsc4I CCNNNNNNNGG 3 cut(s) 725, 926, 975
Bse118I RCCGGY 1 cut(s) 591
Bse1I ACTGG 2 cut(s) 315, 809
Bse3DI GCAATG 1 cut(s) 909
BseAI TCCGGA 3 cut(s) 668, 788, 1320
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 491, 1158
BseGI GGATG 6 cut(s) 333, 503, 688, 763, 1153, 1309
BseLI CCNNNNNNNGG 3 cut(s) 725, 926, 975
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 3 cut(s) 96, 320, 1088
BseNI ACTGG 2 cut(s) 315, 809
BseRI GAGGAG 4 cut(s) 626, 904, 1149, 1305
BseYI CCCAGC 3 cut(s) 464, 839, 964
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 2 cut(s) 143, 1112
BshFI GGCC 2 cut(s) 915, 985
BshTI ACCGGT 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 1311
BsiHKCI CYCGRG 1 cut(s) 1100
BsiSI CCGG 4 cut(s) 592, 669, 789, 1321
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 3 cut(s) 725, 926, 975
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 309
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 2 cut(s) 915, 985
BsoBI CYCGRG 1 cut(s) 1100
Bsp1286I GDGCHC 1 cut(s) 1311
Bsp13I TCCGGA 3 cut(s) 668, 788, 1320
Bsp143I GATC 4 cut(s) 302, 506, 619, 1119
BspACI CCGC 5 cut(s) 143, 423, 1112, 1275, 1296
BspANI GGCC 2 cut(s) 915, 985
BspCNI CTCAG 3 cut(s) 95, 319, 1087
BspEI TCCGGA 3 cut(s) 668, 788, 1320
BspFNI CGCG 2 cut(s) 143, 1112
BspLI GGNNCC 5 cut(s) 297, 829, 963, 1138, 1174
BspMAI CTGCAG 2 cut(s) 952, 1009
BspPI GGATC 3 cut(s) 310, 514, 627
BsrDI GCAATG 1 cut(s) 909
BsrFI RCCGGY 1 cut(s) 591
BsrI ACTGG 2 cut(s) 315, 809
BssAI RCCGGY 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 491, 1158
BssMI GATC 4 cut(s) 302, 506, 619, 1119
BssNI GRCGYC 2 cut(s) 66, 1038
BssT1I CCWWGG 2 cut(s) 491, 1158
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 8 cut(s) 104, 289, 361, 376, 387, 748, 866, 1226
BstACI GRCGYC 2 cut(s) 66, 1038
BstC8I GCNNGC 3 cut(s) 88, 213, 987
BstDEI CTNAG 3 cut(s) 82, 306, 1074
BstF5I GGATG 6 cut(s) 333, 503, 688, 763, 1153, 1309
BstFNI CGCG 2 cut(s) 143, 1112
BstH2I RGCGCY 1 cut(s) 1167
BstHHI GCGC 1 cut(s) 1166
BstKTI GATC 4 cut(s) 305, 509, 622, 1122
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 4 cut(s) 302, 506, 619, 1119
BstMWI GCNNNNNNNGC 7 cut(s) 341, 419, 434, 656, 1001, 1013, 1172
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 3 cut(s) 948, 1005, 1167
BstUI CGCG 2 cut(s) 143, 1112
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 498
BstYI RGATCY 1 cut(s) 302
BsuI GTATCC 2 cut(s) 21, 184
BsuRI GGCC 2 cut(s) 915, 985
BtrI CACGTC 1 cut(s) 1214
BtsCI GGATG 6 cut(s) 333, 503, 688, 763, 1153, 1309
BtsIMutI CAGTG 4 cut(s) 109, 322, 392, 816
Cac8I GCNNGC 3 cut(s) 88, 213, 987
CaiI CAGNNNCTG 2 cut(s) 752, 1277
CfoI GCGC 1 cut(s) 1166
Cfr10I RCCGGY 1 cut(s) 591
Cfr13I GGNCC 3 cut(s) 296, 961, 983
CseI GACGC 3 cut(s) 74, 1118, 1198
Csp6I GTAC 1 cut(s) 285
CspAI ACCGGT 1 cut(s) 591
CviAII CATG 3 cut(s) 478, 973, 1199
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 3 cut(s) 82, 306, 1074
DpnI GATC 4 cut(s) 304, 508, 621, 1121
DpnII GATC 4 cut(s) 302, 506, 619, 1119
Ecl136II GAGCTC 1 cut(s) 1309
Eco130I CCWWGG 2 cut(s) 491, 1158
Eco147I AGGCCT 1 cut(s) 915
Eco24I GRGCYC 1 cut(s) 1311
Eco47I GGWCC 2 cut(s) 296, 961
Eco53kI GAGCTC 1 cut(s) 1309
Eco57I CTGAAG 3 cut(s) 386, 558, 824
Eco88I CYCGRG 1 cut(s) 1100
EcoICRI GAGCTC 1 cut(s) 1309
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 2 cut(s) 491, 1158
EcoT38I GRGCYC 1 cut(s) 1311
ErhI CCWWGG 2 cut(s) 491, 1158
FaeI CATG 3 cut(s) 481, 976, 1202
FaqI GGGAC 1 cut(s) 309
FatI CATG 3 cut(s) 477, 972, 1198
FblI GTMKAC 1 cut(s) 1041
FokI GGATG 6 cut(s) 340, 510, 695, 770, 1140, 1316
FriOI GRGCYC 1 cut(s) 1311
FspBI CTAG 2 cut(s) 849, 1106
GlaI GCGC 1 cut(s) 1165
GsaI CCCAGC 3 cut(s) 468, 843, 968
GsuI CTGGAG 2 cut(s) 491, 891
HaeII RGCGCY 1 cut(s) 1167
HaeIII GGCC 2 cut(s) 915, 985
HapII CCGG 4 cut(s) 592, 669, 789, 1321
HgaI GACGC 3 cut(s) 74, 1118, 1198
HhaI GCGC 1 cut(s) 1166
Hin1I GRCGYC 2 cut(s) 66, 1038
Hin1II CATG 3 cut(s) 481, 976, 1202
Hin6I GCGC 1 cut(s) 1164
HinP1I GCGC 1 cut(s) 1164
HincII GTYRAC 3 cut(s) 514, 715, 1042
HindII GTYRAC 3 cut(s) 514, 715, 1042
HinfI GANTC 3 cut(s) 473, 635, 766
HpaII CCGG 4 cut(s) 592, 669, 789, 1321
HphI GGTGA 2 cut(s) 281, 740
Hpy166II GTNNAC 6 cut(s) 253, 379, 514, 715, 961, 1042
Hpy188I TCNGA 5 cut(s) 64, 309, 371, 577, 1092
Hpy188III TCNNGA 6 cut(s) 200, 669, 789, 937, 1260, 1321
Hpy8I GTNNAC 6 cut(s) 253, 379, 514, 715, 961, 1042
Hpy99I CGWCG 4 cut(s) 68, 1043, 1192, 1215
HpyAV CCTTC 3 cut(s) 60, 563, 926
HpyCH4III ACNGT 8 cut(s) 104, 289, 361, 376, 387, 748, 866, 1226
HpyCH4IV ACGT 3 cut(s) 175, 1038, 1213
HpyF10VI GCNNNNNNNGC 7 cut(s) 341, 419, 434, 656, 1001, 1013, 1172
HpyF3I CTNAG 3 cut(s) 82, 306, 1074
HpySE526I ACGT 3 cut(s) 175, 1038, 1213
Hsp92I GRCGYC 2 cut(s) 66, 1038
Hsp92II CATG 3 cut(s) 481, 976, 1202
HspAI GCGC 1 cut(s) 1164
Kpn2I TCCGGA 3 cut(s) 668, 788, 1320
Kzo9I GATC 4 cut(s) 302, 506, 619, 1119
LmnI GCTCC 6 cut(s) 461, 613, 872, 1136, 1172, 1268
LweI GCATC 2 cut(s) 1079, 1169
MaeI CTAG 2 cut(s) 849, 1106
MaeII ACGT 3 cut(s) 175, 1038, 1213
MaeIII GTNAC 2 cut(s) 269, 860
MalI GATC 4 cut(s) 304, 508, 621, 1121
MboI GATC 4 cut(s) 302, 506, 619, 1119
MboII GAAGA 5 cut(s) 35, 51, 538, 548, 833
MfeI CAATTG 1 cut(s) 547
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 1311
MluCI AATT 3 cut(s) 547, 844, 854
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 2 cut(s) 87, 1070
MnlI CCTC 9 cut(s) 79, 91, 226, 604, 882, 1054, 1127, 1283, 1286
MroI TCCGGA 3 cut(s) 668, 788, 1320
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 5 cut(s) 597, 678, 816, 857, 1056
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 3 cut(s) 425, 1019, 1277
MspI CCGG 4 cut(s) 592, 669, 789, 1321
MspR9I CCNGG 1 cut(s) 300
MunI CAATTG 1 cut(s) 547
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 2 cut(s) 143, 1112
MwoI GCNNNNNNNGC 7 cut(s) 341, 419, 434, 656, 1001, 1013, 1172
NdeII GATC 4 cut(s) 302, 506, 619, 1119
NlaIII CATG 3 cut(s) 481, 976, 1202
NlaIV GGNNCC 5 cut(s) 297, 829, 963, 1138, 1174
NmuCI GTSAC 2 cut(s) 269, 860
PceI AGGCCT 1 cut(s) 915
PctI GAATGC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 635, 766
PinAI ACCGGT 1 cut(s) 591
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
Psp124BI GAGCTC 1 cut(s) 1311
Psp6I CCWGG 1 cut(s) 298
PspFI CCCAGC 3 cut(s) 464, 839, 964
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 5 cut(s) 297, 829, 963, 1138, 1174
PspPI GGNCC 3 cut(s) 296, 961, 983
PstI CTGCAG 2 cut(s) 952, 1009
PstNI CAGNNNCTG 2 cut(s) 752, 1277
PsuI RGATCY 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 278
SacI GAGCTC 1 cut(s) 1311
SalI GTCGAC 1 cut(s) 1040
SaqAI TTAA 5 cut(s) 597, 678, 816, 857, 1056
Sau3AI GATC 4 cut(s) 302, 506, 619, 1119
Sau96I GGNCC 3 cut(s) 296, 961, 983
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 1 cut(s) 1311
SfaNI GCATC 2 cut(s) 1079, 1169
SfcI CTRYAG 3 cut(s) 948, 1005, 1167
SinI GGWCC 2 cut(s) 296, 961
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 3 cut(s) 547, 844, 854
SseBI AGGCCT 1 cut(s) 915
SsiI CCGC 5 cut(s) 143, 423, 1112, 1275, 1296
SspMI CTAG 2 cut(s) 849, 1106
SstI GAGCTC 1 cut(s) 1311
StuI AGGCCT 1 cut(s) 915
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 2 cut(s) 491, 1158
TaaI ACNGT 8 cut(s) 104, 289, 361, 376, 387, 748, 866, 1226
TaiI ACGT 3 cut(s) 178, 1041, 1216
TaqI TCGA 2 cut(s) 769, 1041
TasI AATT 3 cut(s) 547, 844, 854
TauI GCSGC 3 cut(s) 146, 425, 1277
TfiI GAWTC 2 cut(s) 635, 766
Tru1I TTAA 5 cut(s) 597, 678, 816, 857, 1056
Tru9I TTAA 5 cut(s) 597, 678, 816, 857, 1056
TscAI CASTG 4 cut(s) 109, 322, 392, 816
TseFI GTSAC 2 cut(s) 269, 860
Tsp45I GTSAC 2 cut(s) 269, 860
TspDTI ATGAA 2 cut(s) 381, 1220
TspGWI ACGGA 2 cut(s) 29, 840
TspRI CASTG 4 cut(s) 109, 322, 392, 816
VpaK11BI GGWCC 2 cut(s) 296, 961
XapI RAATTY 1 cut(s) 844
XmiI GTMKAC 1 cut(s) 1041
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 849, 1106
ZraI GACGTC 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.