Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001874

Physical Location & Seq

Genomic Coordinates Forward (+)

13474179 .. 13482371

Gene Structure 8193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG085600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGTAGTTGTTGTTACTGCTGCTAGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGGTAACTATTTTCCAGGTGCTAGAGTCGAGGGAGCCTGAGGATGGGATTGATGAGAATGATTCAGTAGCTATGATGGGGACTACTGAGGAAGCCTTGGAAGCACAGAAAAATTGCAAAAACCAACGTTTGAGATATCTGGAAAACTTGTTGCTGAAACCAATAGATTCAGGGAGCAACTCTGATGCCAAGCTTTTATCAGGAGCCTCCGCCTCCCAAGGTGGTGCTAAAGAAGGGTGGTGGGATCTTGAGTGGAGTAACCAGGCCATACACATAGTTGCCCACAACCAAACAAAGTGGTGGTTTGCAAAACGATTTCTACATCTAGATGTTGTGTCCATTTATGATTACATATTCCTTTGGGATGAAGATTTGGGGGTTGAGGATTTTAAAGTTGGAGATGGTGCTGTTGGAAAGACTTGCCTTCTCATCTCTTACACTAGCAACACTTTTCCTACTGATTATGTTCCAACTGTATTTGACAACTTCAGTGCTAATGTTTTGGTTGATGGGCAGACTGTGAATCTGGGTCTCTGGGATACTGCTGGTGAAGAAGATTATAAAAGGTTGAGGCCTCTTAGTTACAGAGGAGCTGATATTTTTCTTCTTGCCTTTTCTCTCATAAGTAGGCCTAGCTATGAGAACATATCAAAGAAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0010646 GO:0010928 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0023051 GO:0030427 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070013 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

267

Amino Acids

29.91

Weight (kDa)

4.83

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	1 - 51	3.5e-12	Thiolase, N-terminal domain
DUF707	PF05212	123 - 180	1.4e-27	Protein of unknown function (DUF707)
Ras	PF00071	180 - 266	1.6e-28	Ras family
Roc	PF08477	180 - 263	5.5e-14	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04710 AT2G33150
fragaria_vesca	FvH4_4g00310
malus_domestica	MD04G1003800.v1.1
prunus_persica	Prupe.1G003300_v2.0.a1 Prupe.1G003300_v2.0.a1
pyrus_communis	pycom04g00390
rosa_chinensis	RchiOBHm_Chr4g0385141 RchiOBHm_Chr4g0415491 RchiOBHm_Chr6g0275511
rosa_laevigata	RLG00000005750 RLG00000010254
rosa_multiflora	Rmu_sc0003086.1_g000005 Rmu_sc0008734.1_g000018 Rmu_sc0010556.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010730 Rroxscaffold_1G00018720 Rroxscaffold_1G00054220 Rroxscaffold_3G00240070 Rroxscaffold_5G00333060 Rroxscaffold_5G00355890 Rroxscaffold_6G00390920
rosa_rugosa	Rorug03G0299900
rosa_samantha	Rh1BG085600 Rh2BG386800 Rh2BG500100 Rh2DG511300 Rh4AG003100 Rh4BG002500 Rh4BG187100 Rh4CG003300 Rh4DG002800 Rh5AG250800 Rh5AG295600 Rh5AG385400 Rh5AG466200 Rh5BG246000 Rh5DG254500 Rh6DG201600 Rh7CG178800 Rh7CG381300 Rh7DG359400
rosa_wichuraiana	Rw3G018530 Rw4G000620 Rw7G039000 Rw7G041060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
AciI	CCGC	1 cut(s)	354
AclI	AACGTT	1 cut(s)	271
AclWI	GGATC	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	616
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	45
AjnI	CCWGG	2 cut(s)	159, 405
AluBI	AGCT	4 cut(s)	215, 337, 737, 780
AluI	AGCT	4 cut(s)	215, 337, 737, 780
Alw26I	GTCTC	1 cut(s)	680
AlwI	GGATC	1 cut(s)	396
AoxI	GGCC	3 cut(s)	408, 716, 773
ApeKI	GCWGC	2 cut(s)	65, 104
AsuHPI	GGTGA	1 cut(s)	704
AxyI	CCTNAGG	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	52, 91
BccI	CCATC	4 cut(s)	182, 214, 539, 647
BciT130I	CCWGG	2 cut(s)	161, 407
BciVI	GTATCC	1 cut(s)	676
BcoDI	GTCTC	1 cut(s)	680
BfaI	CTAG	5 cut(s)	108, 167, 470, 585, 777
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	676
BisI	GCNGC	2 cut(s)	66, 105
BlsI	GCNGC	2 cut(s)	67, 106
Bme1390I	CCNGG	2 cut(s)	161, 407
BmiI	GGNNCC	2 cut(s)	180, 349
BmrFI	CCNGG	2 cut(s)	161, 407
BmsI	GCATC	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	680
BsaJI	CCNNGG	3 cut(s)	144, 240, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	161, 407
BseDI	CCNNGG	3 cut(s)	144, 240, 361
BseGI	GGATG	2 cut(s)	193, 514
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	3 cut(s)	27, 174, 222
BseRI	GAGGAG	1 cut(s)	747
BseXI	GCAGC	2 cut(s)	52, 91
BshFI	GGCC	3 cut(s)	410, 718, 775
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	410, 718, 775
Bso31I	GGTCTC	1 cut(s)	680
Bsp143I	GATC	2 cut(s)	58, 388
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	3 cut(s)	410, 718, 775
BspCNI	CTCAG	3 cut(s)	26, 175, 223
BspLI	GGNNCC	2 cut(s)	180, 349
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	680
BssECI	CCNNGG	3 cut(s)	144, 240, 361
BssMI	GATC	2 cut(s)	58, 388
BssT1I	CCWWGG	3 cut(s)	144, 240, 361
Bst2UI	CCWGG	2 cut(s)	161, 407
Bst4CI	ACNGT	3 cut(s)	40, 619, 664
BstDEI	CTNAG	4 cut(s)	13, 183, 231, 722
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	193, 514
BstKTI	GATC	2 cut(s)	61, 391
BstMAI	GTCTC	1 cut(s)	680
BstMBI	GATC	2 cut(s)	58, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	2 cut(s)	161, 407
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	159, 405
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	52, 91
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
Bsu36I	CCTNAGG	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	3 cut(s)	410, 718, 775
BtsCI	GGATG	2 cut(s)	193, 514
BtsIMutI	CAGTG	1 cut(s)	640
CspCI	CAANNNNNGTGG	2 cut(s)	422, 457
DdeI	CTNAG	4 cut(s)	13, 183, 231, 722
DpnI	GATC	2 cut(s)	60, 390
DpnII	GATC	2 cut(s)	58, 388
DraI	TTTAAA	2 cut(s)	118, 535
EciI	GGCGGA	1 cut(s)	343
Eco130I	CCWWGG	3 cut(s)	144, 240, 361
Eco147I	AGGCCT	2 cut(s)	718, 775
Eco31I	GGTCTC	1 cut(s)	680
Eco32I	GATATC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	616
Eco81I	CCTNAGG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	159, 405
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	3 cut(s)	144, 240, 361
ErhI	CCWWGG	3 cut(s)	144, 240, 361
FaqI	GGGAC	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	66, 105
FokI	GGATG	2 cut(s)	200, 521
Fsp4HI	GCNGC	2 cut(s)	66, 105
FspBI	CTAG	5 cut(s)	108, 167, 470, 585, 777
GluI	GCNGC	2 cut(s)	66, 105
HaeIII	GGCC	3 cut(s)	410, 718, 775
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	5 cut(s)	74, 170, 206, 311, 667
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	16, 328
Hpy188III	TCNNGA	4 cut(s)	284, 345, 392, 470
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	371, 578
HpyCH4III	ACNGT	3 cut(s)	40, 619, 664
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	68, 261, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	4 cut(s)	13, 183, 231, 722
HpySE526I	ACGT	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	58, 388
LmnI	GCTCC	5 cut(s)	52, 178, 318, 347, 734
Lsp1109I	GCAGC	2 cut(s)	52, 91
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	5 cut(s)	108, 167, 470, 585, 777
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	5 cut(s)	7, 97, 148, 401, 725
MalI	GATC	2 cut(s)	60, 390
MboI	GATC	2 cut(s)	58, 388
MboII	GAAGA	4 cut(s)	524, 707, 710, 740
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	2 cut(s)	126, 256
MlyI	GAGTC	2 cut(s)	68, 179
MmeI	TCCRAC	3 cut(s)	520, 535, 638
MseI	TTAA	2 cut(s)	117, 534
MslI	CAYNNNNRTG	1 cut(s)	471
MspR9I	CCNGG	2 cut(s)	161, 407
MvaI	CCWGG	2 cut(s)	161, 407
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	2 cut(s)	58, 388
NlaIV	GGNNCC	2 cut(s)	180, 349
NmuCI	GTSAC	1 cut(s)	7
PceI	AGGCCT	2 cut(s)	718, 775
PfeI	GAWTC	3 cut(s)	206, 311, 667
PkrI	GCNGC	2 cut(s)	67, 106
PleI	GAGTC	2 cut(s)	68, 178
PpsI	GAGTC	2 cut(s)	68, 178
PsiI	TTATAA	1 cut(s)	705
Psp1406I	AACGTT	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	159, 405
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	2 cut(s)	159, 405
PspN4I	GGNNCC	2 cut(s)	180, 349
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	117, 534
SatI	GCNGC	2 cut(s)	66, 105
Sau3AI	GATC	2 cut(s)	58, 388
SchI	GAGTC	2 cut(s)	68, 179
ScrFI	CCNGG	2 cut(s)	161, 407
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	2 cut(s)	126, 256
SseBI	AGGCCT	2 cut(s)	718, 775
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	5 cut(s)	108, 167, 470, 585, 777
StuI	AGGCCT	2 cut(s)	718, 775
StyD4I	CCNGG	2 cut(s)	159, 405
StyI	CCWWGG	3 cut(s)	144, 240, 361
TaaI	ACNGT	3 cut(s)	40, 619, 664
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	173
TasI	AATT	2 cut(s)	126, 256
TfiI	GAWTC	3 cut(s)	206, 311, 667
Tru1I	TTAA	2 cut(s)	117, 534
Tru9I	TTAA	2 cut(s)	117, 534
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	65, 104
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	138, 525
TspRI	CASTG	1 cut(s)	640
XbaI	TCTAGA	1 cut(s)	469
XspI	CTAG	5 cut(s)	108, 167, 470, 585, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.