Rh5AG250800

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001874
Physical Location & Seq
Forward (+)
32062257 .. 32065871
3615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG250800.1

Sequence Viewer

Length: 342 bp
ATGGAGCCTCGAGTAAAGAGCAAAGAACAAAGAGCCATTAGGTTGCTTCTTCTCATAGTGCTCCATGCATTGACTGCCTTGGCATTTCAGAGAGATAGTTTGGTTCCATTTTTTCGTAAATATTGTATTGGCATACAAGTTGACTCTCATAGAAAGGCAGTTGCTGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGGTTGTTGATCCAAAATCTGGTGATGATGGGATTCGAAATACAACATTGTCAGACCTAGCAAAGTTGAAGCCTCTGTTTAAGAAAGATGGGACCACGTACCACTGCTGTGCAATGGACAGACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

113

Amino Acids

12.62

Weight (kDa)

9.72

Isoelectric Point (pI)

11.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 47 - 104 1.5e-13 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 233
AclWI GGATC 1 cut(s) 218
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 283
AleI CACNNNNGTG 1 cut(s) 321
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 164, 173
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 248
AsuII TTCGAA 1 cut(s) 250
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 151, 160
BccI CCATC 2 cut(s) 236, 296
BfaI CTAG 1 cut(s) 272
BisI GCNGC 2 cut(s) 165, 174
BlsI GCNGC 2 cut(s) 166, 175
Bme18I GGWCC 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 3 cut(s) 6, 105, 307
Bpu14I TTCGAA 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 78, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 78, 213
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 333
BseXI GCAGC 2 cut(s) 151, 160
BsiHKAI GWGCWC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 6, 105, 307
BspPI GGATC 1 cut(s) 218
BspT104I TTCGAA 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 78, 213
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 2 cut(s) 78, 213
Bst4CI ACNGT 1 cut(s) 339
BstAPI GCANNNNNTGC 2 cut(s) 74, 164
BstBAI YACGTR 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 250
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 4 cut(s) 74, 164, 170, 173
BstV1I GCAGC 2 cut(s) 151, 160
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 316
CaiI CAGNNNCTG 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 65
CviJI RGCY 3 cut(s) 7, 35, 286
CviKI_1 RGCY 3 cut(s) 7, 35, 286
CviQI GTAC 1 cut(s) 313
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DraI TTTAAA 1 cut(s) 187
Eco130I CCWWGG 2 cut(s) 78, 213
Eco47I GGWCC 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 9
EcoT14I CCWWGG 2 cut(s) 78, 213
EcoT22I ATGCAT 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 78, 213
FaeI CATG 1 cut(s) 68
FaiI YATR 4 cut(s) 56, 66, 134, 150
FaqI GGGAC 1 cut(s) 319
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 165, 174
Fsp4HI GCNGC 2 cut(s) 165, 174
FspBI CTAG 1 cut(s) 272
GluI GCNGC 2 cut(s) 165, 174
Hin1II CATG 1 cut(s) 68
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 2 cut(s) 143, 247
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 90, 268
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 68, 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 164, 170, 173
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 2 cut(s) 4, 66
LpnPI CCDG 3 cut(s) 162, 216, 219
Lsp1109I GCAGC 2 cut(s) 151, 160
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 311
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 2 cut(s) 18, 297
Mph1103I ATGCAT 1 cut(s) 70
MseI TTAA 2 cut(s) 186, 294
MslI CAYNNNNRTG 1 cut(s) 321
MwoI GCNNNNNNNGC 4 cut(s) 74, 164, 170, 173
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 3 cut(s) 6, 105, 307
NsiI ATGCAT 1 cut(s) 70
NspV TTCGAA 1 cut(s) 250
OliI CACNNNNGTG 1 cut(s) 321
PaeR7I CTCGAG 1 cut(s) 9
PfeI GAWTC 1 cut(s) 247
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 2 cut(s) 166, 175
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Ppu21I YACGTR 1 cut(s) 312
PspN4I GGNNCC 3 cut(s) 6, 105, 307
PspPI GGNCC 1 cut(s) 306
PspXI VCTCGAGB 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 186, 294
SatI GCNGC 2 cut(s) 165, 174
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 306
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 1 cut(s) 63
SetI ASST 4 cut(s) 44, 219, 273, 314
Sfr274I CTCGAG 1 cut(s) 9
SfuI TTCGAA 1 cut(s) 250
SinI GGWCC 1 cut(s) 306
SlaI CTCGAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 1 cut(s) 195
SspI AATATT 1 cut(s) 122
SspMI CTAG 1 cut(s) 272
StyI CCWWGG 2 cut(s) 78, 213
TaaI ACNGT 1 cut(s) 339
TaiI ACGT 1 cut(s) 314
TaqI TCGA 2 cut(s) 10, 250
TasI AATT 1 cut(s) 195
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 2 cut(s) 186, 294
Tru9I TTAA 2 cut(s) 186, 294
TscAI CASTG 1 cut(s) 323
TseI GCWGC 2 cut(s) 164, 173
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 1 cut(s) 323
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 306
XhoI CTCGAG 1 cut(s) 9
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.