Rroxscaffold_1G00054220

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001874
Physical Location & Seq
Forward (+)
75605212 .. 75606759
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054220.1

Sequence Viewer

Length: 435 bp
ATGAATTTGCATTATGTTCAGGTAAAGATCTTTAAACAAACCCATAATTGCCTTCTTCCTATGGTGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGTAGTTGTTGTTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGGTAACTATTTTCCAGGTGCTAGAGTCGAGGGAGGCTGAGGATGGGCCTGGATATGTCTTTGACAAGTTGTTGGTTGTTTGCTTGAGCAGGATTGATGAGAATGATTCAGTAGCTATGATGAGGACTACTGAGGAAGCCTTGGAAAGCACAGAAAAATTGCAAAAACCATCATTTGAGATATCTGGAAAACTTGCTGCTCAAACCAATAGATTCAGGGGTAAGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

144

Amino Acids

16.17

Weight (kDa)

6.42

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 20 - 72 5.9e-13 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 4
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 2 cut(s) 219, 253
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 3 cut(s) 125, 164, 401
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 112, 151, 388
BccI CCATC 2 cut(s) 242, 382
BciT130I CCWGG 2 cut(s) 221, 255
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 126
BglII AGATCT 1 cut(s) 27
BisI GCNGC 3 cut(s) 126, 165, 402
BlsI GCNGC 3 cut(s) 127, 166, 403
Bme1390I CCNGG 2 cut(s) 221, 255
BmgT120I GGNCC 1 cut(s) 251
BmrFI CCNGG 2 cut(s) 221, 255
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 204, 345
BseBI CCWGG 2 cut(s) 221, 255
BseDI CCNNGG 2 cut(s) 204, 345
BseGI GGATG 1 cut(s) 253
BseMII CTCAG 3 cut(s) 87, 234, 327
BseXI GCAGC 3 cut(s) 112, 151, 388
BshFI GGCC 1 cut(s) 253
BsnI GGCC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 27, 118
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 3 cut(s) 86, 235, 328
BspMAI CTGCAG 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 204, 345
BssMI GATC 2 cut(s) 27, 118
BssT1I CCWWGG 2 cut(s) 204, 345
Bst2UI CCWGG 2 cut(s) 221, 255
Bst4CI ACNGT 1 cut(s) 100
BstDEI CTNAG 3 cut(s) 73, 243, 336
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 30, 121
BstMBI GATC 2 cut(s) 27, 118
BstNI CCWGG 2 cut(s) 221, 255
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 219, 253
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 112, 151, 388
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 251
CviJI RGCY 5 cut(s) 125, 242, 253, 320, 344
CviKI_1 RGCY 5 cut(s) 125, 242, 253, 320, 344
DdeI CTNAG 3 cut(s) 73, 243, 336
DpnI GATC 2 cut(s) 29, 120
DpnII GATC 2 cut(s) 27, 118
DraI TTTAAA 2 cut(s) 34, 178
Eco130I CCWWGG 2 cut(s) 204, 345
Eco32I GATATC 1 cut(s) 387
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 219, 253
EcoRV GATATC 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 204, 345
ErhI CCWWGG 2 cut(s) 204, 345
FaiI YATR 6 cut(s) 15, 45, 62, 141, 261, 323
Fnu4HI GCNGC 3 cut(s) 126, 165, 402
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 126, 165, 402
FspBI CTAG 1 cut(s) 227
GluI GCNGC 3 cut(s) 126, 165, 402
HaeIII GGCC 1 cut(s) 253
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 134, 230, 311, 417
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 390
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 10, 128, 367
HpyF3I CTNAG 3 cut(s) 73, 243, 336
Kzo9I GATC 2 cut(s) 27, 118
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 3 cut(s) 112, 151, 388
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 3 cut(s) 67, 157, 208
MalI GATC 2 cut(s) 29, 120
MboI GATC 2 cut(s) 27, 118
MboII GAAGA 1 cut(s) 47
MflI RGATCY 1 cut(s) 27
MluCI AATT 4 cut(s) 4, 46, 186, 362
MlyI GAGTC 2 cut(s) 128, 239
MnlI CCTC 6 cut(s) 82, 228, 232, 238, 321, 331
MseI TTAA 2 cut(s) 33, 177
MspR9I CCNGG 2 cut(s) 221, 255
MvaI CCWGG 2 cut(s) 221, 255
NdeII GATC 2 cut(s) 27, 118
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 311, 417
PkrI GCNGC 3 cut(s) 127, 166, 403
PleI GAGTC 2 cut(s) 128, 238
PpsI GAGTC 2 cut(s) 128, 238
Psp6I CCWGG 2 cut(s) 219, 253
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 2 cut(s) 219, 253
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 130
PsuI RGATCY 1 cut(s) 27
SaqAI TTAA 2 cut(s) 33, 177
SatI GCNGC 3 cut(s) 126, 165, 402
Sau3AI GATC 2 cut(s) 27, 118
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 2 cut(s) 128, 239
ScrFI CCNGG 2 cut(s) 221, 255
SetI ASST 6 cut(s) 24, 74, 150, 210, 225, 322
SfcI CTRYAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 4 cut(s) 4, 46, 186, 362
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 219, 253
StyI CCWWGG 2 cut(s) 204, 345
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 233
TasI AATT 4 cut(s) 4, 46, 186, 362
TfiI GAWTC 2 cut(s) 311, 417
Tru1I TTAA 2 cut(s) 33, 177
Tru9I TTAA 2 cut(s) 33, 177
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 3 cut(s) 125, 164, 401
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 17, 198
XapI RAATTY 1 cut(s) 4
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.