Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001874

Physical Location & Seq

Genomic Coordinates Reverse (-)

59837554 .. 59838852

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAATTTGCATTATGTTCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGCAGTTGTTGTTACTGCTGCATGTAGATTTAAAGATGAAATTATCCTTGTGGCAACCAAGGTGCTAGAGTCGAGGGAGGCTGAGGATGGGCCTGGATATGTCTTTGATAAGCTGTTGGTTGTTTGCTTGAGCAAGATTGATGAGAATGATTCAGTAGCTATGATGAGGACTACTGAGGAAGCCTTGGAAGCACAGAAAAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

87

Amino Acids

9.81

Weight (kDa)

4.77

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04710 AT2G33150
fragaria_vesca	FvH4_4g00310
malus_domestica	MD04G1003800.v1.1
prunus_persica	Prupe.1G003300_v2.0.a1 Prupe.1G003300_v2.0.a1
pyrus_communis	pycom04g00390
rosa_chinensis	RchiOBHm_Chr4g0385141 RchiOBHm_Chr4g0415491 RchiOBHm_Chr6g0275511
rosa_laevigata	RLG00000005750 RLG00000010254
rosa_multiflora	Rmu_sc0003086.1_g000005 Rmu_sc0008734.1_g000018 Rmu_sc0010556.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010730 Rroxscaffold_1G00018720 Rroxscaffold_1G00054220 Rroxscaffold_3G00240070 Rroxscaffold_5G00333060 Rroxscaffold_5G00355890 Rroxscaffold_6G00390920
rosa_rugosa	Rorug03G0299900
rosa_samantha	Rh1BG085600 Rh2BG386800 Rh2BG500100 Rh2DG511300 Rh4AG003100 Rh4BG002500 Rh4BG187100 Rh4CG003300 Rh4DG002800 Rh5AG250800 Rh5AG295600 Rh5AG385400 Rh5AG466200 Rh5BG246000 Rh5DG254500 Rh6DG201600 Rh7CG178800 Rh7CG381300 Rh7DG359400
rosa_wichuraiana	Rw3G018530 Rw4G000620 Rw7G039000 Rw7G041060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	4
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	2 cut(s)	169, 215
AluI	AGCT	2 cut(s)	169, 215
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	35, 74
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	22, 61
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	150
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	2 cut(s)	36, 75
BlsI	GCNGC	2 cut(s)	37, 76
Bme1390I	CCNGG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	114, 240
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	114, 240
BseGI	GGATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	129, 222
BseXI	GCAGC	2 cut(s)	22, 61
BshFI	GGCC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	2 cut(s)	130, 223
BspMAI	CTGCAG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	114, 240
BssMI	GATC	1 cut(s)	28
BssT1I	CCWWGG	2 cut(s)	114, 240
Bst2UI	CCWGG	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	138, 231
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	22, 61
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	146
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	6 cut(s)	35, 137, 148, 169, 215, 239
CviKI_1	RGCY	6 cut(s)	35, 137, 148, 169, 215, 239
DdeI	CTNAG	2 cut(s)	138, 231
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
DraI	TTTAAA	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	114, 240
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	114, 240
ErhI	CCWWGG	2 cut(s)	114, 240
FaeI	CATG	1 cut(s)	81
FaiI	YATR	5 cut(s)	15, 51, 79, 156, 218
FatI	CATG	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	36, 75
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	36, 75
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	2 cut(s)	36, 75
HaeIII	GGCC	1 cut(s)	148
Hin1II	CATG	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	3 cut(s)	44, 125, 206
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	10, 38, 77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	2 cut(s)	138, 231
Hsp92II	CATG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	4 cut(s)	5, 17, 135, 162
Lsp1109I	GCAGC	2 cut(s)	22, 61
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MluCI	AATT	3 cut(s)	4, 96, 256
MlyI	GAGTC	2 cut(s)	38, 134
MnlI	CCTC	5 cut(s)	123, 127, 133, 216, 226
MseI	TTAA	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	1 cut(s)	81
NspI	RCATGY	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	37, 76
PleI	GAGTC	2 cut(s)	38, 133
PpsI	GAGTC	2 cut(s)	38, 133
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	36, 75
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	2 cut(s)	38, 134
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	3 cut(s)	120, 171, 217
SfcI	CTRYAG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	3 cut(s)	4, 96, 256
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	114, 240
TaqI	TCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	4, 96, 256
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	2 cut(s)	35, 74
TspDTI	ATGAA	2 cut(s)	17, 108
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	81
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.