Rw7G041060

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001874
Physical Location & Seq
Reverse (-)
64004848 .. 64007460
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041060.1

Sequence Viewer

Length: 546 bp
ATGACATTGGTAAAGATCTTTAAACAAACCCAAAATTGCCTTCTTCCTATGGGGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGAACAGGCTGCAGTTGACTCTCATAGAAAGGCAGTTGTTGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGTCAACCAAGGTAACTATTTTCCAGGTGCTAGAGTCGAGGGAGGCTGAGGATGGGCCTGGATATGTCTTTGACAAGTTGTTGGTTGTTTGCTTGAGTAGGATTGATGAGAATGATTCAGTAGCTATGATGAGGACTGCTGAGGAAGCCTTGGAAGCACAGAAAAATTGGAAGAAGCTGACTTTTAGAGCAACTTTGATGCCAAGCTTTTATCAGGAGCCTCCACCTCCTAAGATGGTGCTAAAGAAGATGAGGATGAGCATGGAGAGACACTATGTGGGTCTTGTGGAGAGAACTATGCATCTGATGAATTTTGGATTTGCTGCGATGTCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

181

Amino Acids

20.41

Weight (kDa)

8.79

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 15 - 68 2e-15 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 493
AdeI CACNNNGTG 1 cut(s) 460
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 2 cut(s) 207, 241
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 3 cut(s) 308, 361, 390
AluI AGCT 3 cut(s) 308, 361, 390
Alw26I GTCTC 1 cut(s) 445
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 113, 152, 506
ApoI RAATTY 1 cut(s) 493
Asp700I GAANNNNTTC 1 cut(s) 526
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 49
BbvCI CCTCAGC 2 cut(s) 231, 324
BbvI GCAGC 3 cut(s) 100, 139, 493
BccI CCATC 2 cut(s) 230, 412
BciT130I CCWGG 2 cut(s) 209, 243
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 114
BglII AGATCT 1 cut(s) 15
BisI GCNGC 3 cut(s) 114, 153, 507
BlsI GCNGC 3 cut(s) 115, 154, 508
Bme1390I CCNGG 2 cut(s) 209, 243
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 402, 529
BmrFI CCNGG 2 cut(s) 209, 243
BmsI GCATC 2 cut(s) 372, 493
Bpu10I CCTNAGC 2 cut(s) 231, 324
BpuEI CTTGAG 1 cut(s) 298
BsaJI CCNNGG 3 cut(s) 192, 333, 531
BseBI CCWGG 2 cut(s) 209, 243
BseDI CCNNGG 3 cut(s) 192, 333, 531
BseGI GGATG 2 cut(s) 241, 444
BseMII CTCAG 3 cut(s) 75, 222, 315
BseXI GCAGC 3 cut(s) 100, 139, 493
BshFI GGCC 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 531
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 3 cut(s) 74, 223, 316
BspLI GGNNCC 2 cut(s) 402, 529
BspMAI CTGCAG 1 cut(s) 118
BssECI CCNNGG 3 cut(s) 192, 333, 531
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 3 cut(s) 192, 333, 531
Bst2UI CCWGG 2 cut(s) 209, 243
Bst4CI ACNGT 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 143
BstDEI CTNAG 4 cut(s) 61, 231, 324, 414
BstDSI CCRYGG 1 cut(s) 531
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 2 cut(s) 241, 444
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 4 cut(s) 143, 152, 329, 338
BstNI CCWGG 2 cut(s) 209, 243
BstPI GGTNACC 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 207, 241
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 100, 139, 493
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 531
BtgZI GCGATG 1 cut(s) 524
BtsCI GGATG 2 cut(s) 241, 444
Cfr13I GGNCC 1 cut(s) 239
CviAII CATG 2 cut(s) 445, 532
CviJI RGCY 8 cut(s) 113, 230, 241, 308, 332, 361, 390, 403
CviKI_1 RGCY 8 cut(s) 113, 230, 241, 308, 332, 361, 390, 403
DdeI CTNAG 4 cut(s) 61, 231, 324, 414
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DraI TTTAAA 2 cut(s) 22, 166
DraIII CACNNNGTG 1 cut(s) 460
Eco130I CCWWGG 3 cut(s) 192, 333, 531
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 207, 241
EcoT14I CCWWGG 3 cut(s) 192, 333, 531
EcoT22I ATGCAT 1 cut(s) 486
ErhI CCWWGG 3 cut(s) 192, 333, 531
FaeI CATG 2 cut(s) 448, 535
FaiI YATR 8 cut(s) 50, 129, 249, 311, 446, 459, 482, 533
FatI CATG 2 cut(s) 444, 531
Fnu4HI GCNGC 3 cut(s) 114, 153, 507
FokI GGATG 2 cut(s) 248, 451
Fsp4HI GCNGC 3 cut(s) 114, 153, 507
FspBI CTAG 1 cut(s) 215
GluI GCNGC 3 cut(s) 114, 153, 507
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 2 cut(s) 448, 535
HincII GTYRAC 2 cut(s) 121, 189
HindII GTYRAC 2 cut(s) 121, 189
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 3 cut(s) 122, 218, 299
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 121, 189
Hpy188I TCNGA 2 cut(s) 64, 489
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 2 cut(s) 121, 189
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 116, 484
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 152, 329, 338
HpyF3I CTNAG 4 cut(s) 61, 231, 324, 414
Hsp92II CATG 2 cut(s) 448, 535
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 2 cut(s) 100, 400
LpnPI CCDG 9 cut(s) 83, 95, 141, 194, 195, 221, 228, 255, 383
Lsp1109I GCAGC 3 cut(s) 100, 139, 493
LweI GCATC 2 cut(s) 372, 493
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 55, 196
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 3 cut(s) 35, 367, 442
MflI RGATCY 1 cut(s) 15
MluCI AATT 4 cut(s) 34, 174, 349, 493
MlyI GAGTC 2 cut(s) 116, 227
MnlI CCTC 9 cut(s) 70, 216, 220, 226, 309, 319, 414, 420, 429
Mph1103I ATGCAT 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 526
MseI TTAA 2 cut(s) 21, 165
MspR9I CCNGG 2 cut(s) 209, 243
MvaI CCWGG 2 cut(s) 209, 243
MwoI GCNNNNNNNGC 4 cut(s) 143, 152, 329, 338
NcoI CCATGG 1 cut(s) 531
NdeII GATC 1 cut(s) 15
NlaIII CATG 2 cut(s) 448, 535
NlaIV GGNNCC 2 cut(s) 402, 529
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 3 cut(s) 115, 154, 508
PleI GAGTC 2 cut(s) 116, 226
PpsI GAGTC 2 cut(s) 116, 226
Psp6I CCWGG 2 cut(s) 207, 241
PspEI GGTNACC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 207, 241
PspN4I GGNNCC 2 cut(s) 402, 529
PspPI GGNCC 1 cut(s) 239
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 15
SaqAI TTAA 2 cut(s) 21, 165
SatI GCNGC 3 cut(s) 114, 153, 507
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 2 cut(s) 116, 227
ScrFI CCNGG 2 cut(s) 209, 243
SetI ASST 7 cut(s) 62, 198, 213, 310, 363, 392, 412
SfaNI GCATC 2 cut(s) 372, 493
SfcI CTRYAG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 4 cut(s) 34, 174, 349, 493
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 2 cut(s) 207, 241
StyI CCWWGG 3 cut(s) 192, 333, 531
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 221
TasI AATT 4 cut(s) 34, 174, 349, 493
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 21, 165
Tru9I TTAA 2 cut(s) 21, 165
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 113, 152, 506
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 186, 506
XapI RAATTY 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 526
XspI CTAG 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.