Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001874

Physical Location & Seq

Genomic Coordinates Reverse (-)

6908254 .. 6912884

Gene Structure 4631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGCCTCGAGTAAAGAGCAAAGAACAAAGAGCCATTAGGTTGCTTCTTCTCATAGTGCTCCATGTATTGACCGCCTTGGCATTTCGGAGAGATAGTTTGGTTCCATTTTTTCGTAAATATTGTATTGGCATACAAAAAGGCGATCTCTTTGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGGTTGTTGATCCAAAATCTGGTGATGATGGGATTCGAAATACAACATTGTCGGACCAAGCAAAGTTGAAGCCTCTATTTAAGAAAGATGGGACCATGTACCACTACTGGGGGCTCTGCAAAAATGGGAATGGCTTTCATGGTGTTACACCCACAAGAGCTAGCAAGGAATATGGAGGGAGGAATATGCCACTAAATCATATTGAGAATGCCTCGAACTTGAAAATAAGAGAAGTGATGGGCCTCTTAGAACTTTCTTTGCGTATTCGATTGGTTAACCGTCTTGCGCCTATCCTCGGTGATGGTAGAATAAAACTATTCTACAGTTTCGAGTTGTGCTACGAAATGTGGTTTGAGGAAAATGTTGTGGTTGTCTTTTCCTCTATGCCAACAAGTTTGTTGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

202

Amino Acids

22.89

Weight (kDa)

9.65

Isoelectric Point (pI)

27.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	52 - 100	5.9e-07	Thiolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04710 AT2G33150
fragaria_vesca	FvH4_4g00310
malus_domestica	MD04G1003800.v1.1
prunus_persica	Prupe.1G003300_v2.0.a1 Prupe.1G003300_v2.0.a1
pyrus_communis	pycom04g00390
rosa_chinensis	RchiOBHm_Chr4g0385141 RchiOBHm_Chr4g0415491 RchiOBHm_Chr6g0275511
rosa_laevigata	RLG00000005750 RLG00000010254
rosa_multiflora	Rmu_sc0003086.1_g000005 Rmu_sc0008734.1_g000018 Rmu_sc0010556.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010730 Rroxscaffold_1G00018720 Rroxscaffold_1G00054220 Rroxscaffold_3G00240070 Rroxscaffold_5G00333060 Rroxscaffold_5G00355890 Rroxscaffold_6G00390920
rosa_rugosa	Rorug03G0299900
rosa_samantha	Rh1BG085600 Rh2BG386800 Rh2BG500100 Rh2DG511300 Rh4AG003100 Rh4BG002500 Rh4BG187100 Rh4CG003300 Rh4DG002800 Rh5AG250800 Rh5AG295600 Rh5AG385400 Rh5AG466200 Rh5BG246000 Rh5DG254500 Rh6DG201600 Rh7CG178800 Rh7CG381300 Rh7DG359400
rosa_wichuraiana	Rw3G018530 Rw4G000620 Rw7G039000 Rw7G041060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	221
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	221, 310, 497
AgsI	TTSAA	2 cut(s)	271, 424
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw21I	GWGCWC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	3 cut(s)	256, 294, 442
AsuHPI	GGTGA	2 cut(s)	236, 512
AsuII	TTCGAA	1 cut(s)	238
AsuNHI	GCTAGC	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	256, 294
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	4 cut(s)	224, 284, 433, 497
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	523
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	256, 294
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	3 cut(s)	256, 294, 442
BmiI	GGNNCC	3 cut(s)	6, 105, 295
BmrI	ACTGGG	1 cut(s)	319
BmtI	GCTAGC	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
Bpu14I	TTCGAA	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	78, 201, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 310, 497
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	3 cut(s)	78, 201, 496
BseLI	CCNNNNNNNGG	3 cut(s)	221, 310, 497
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	221, 310, 497
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	444
BsoBI	CYCGRG	1 cut(s)	9
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	63, 318
Bsp143I	GATC	2 cut(s)	145, 211
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	444
BspLI	GGNNCC	3 cut(s)	6, 105, 295
BspOI	GCTAGC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	206
BspT104I	TTCGAA	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	78, 201, 496
BssMI	GATC	2 cut(s)	145, 211
BssT1I	CCWWGG	2 cut(s)	78, 201
Bst4CI	ACNGT	2 cut(s)	482, 527
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	2 cut(s)	148, 214
BstMBI	GATC	2 cut(s)	145, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	3 cut(s)	256, 294, 442
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	3 cut(s)	65, 298, 341
CviJI	RGCY	7 cut(s)	7, 35, 274, 316, 336, 362, 444
CviKI_1	RGCY	7 cut(s)	7, 35, 274, 316, 336, 362, 444
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	2 cut(s)	147, 213
DpnII	GATC	2 cut(s)	145, 211
DraI	TTTAAA	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	78, 201
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	2 cut(s)	256, 294
Eco88I	CYCGRG	1 cut(s)	9
EcoT14I	CCWWGG	2 cut(s)	78, 201
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	2 cut(s)	78, 201
FaeI	CATG	3 cut(s)	68, 301, 344
FaiI	YATR	9 cut(s)	56, 66, 134, 299, 342, 375, 389, 402, 587
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	64, 297, 340
Fnu4HI	GCNGC	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	444
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	3 cut(s)	68, 301, 344
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	1 cut(s)	235
HpaI	GTTAAC	1 cut(s)	478
HphI	GGTGA	2 cut(s)	236, 512
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	2 cut(s)	90, 256
Hpy8I	GTNNAC	1 cut(s)	478
HpyCH4III	ACNGT	2 cut(s)	482, 527
HpyCH4V	TGCA	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	448
Hsp92II	CATG	3 cut(s)	68, 301, 344
HspAI	GCGC	1 cut(s)	488
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	145, 211
LmnI	GCTCC	2 cut(s)	4, 66
LpnPI	CCDG	4 cut(s)	150, 204, 207, 295
Lsp1109I	GCAGC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	2 cut(s)	147, 213
MboI	GATC	2 cut(s)	145, 211
MboII	GAAGA	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	63, 318
MluCI	AATT	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	9 cut(s)	18, 285, 371, 375, 424, 455, 506, 550, 592
MseI	TTAA	3 cut(s)	174, 282, 477
Mva1269I	GAATGC	1 cut(s)	415
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	2 cut(s)	145, 211
NheI	GCTAGC	1 cut(s)	362
NlaIII	CATG	3 cut(s)	68, 301, 344
NlaIV	GGNNCC	3 cut(s)	6, 105, 295
NspV	TTCGAA	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	9
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	163
PspN4I	GGNNCC	3 cut(s)	6, 105, 295
PspPI	GGNCC	3 cut(s)	256, 294, 442
PspXI	VCTCGAGB	1 cut(s)	9
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SaqAI	TTAA	3 cut(s)	174, 282, 477
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	145, 211
Sau96I	GGNCC	3 cut(s)	256, 294, 442
SduI	GDGCHC	2 cut(s)	63, 318
SetI	ASST	3 cut(s)	44, 207, 364
SfcI	CTRYAG	1 cut(s)	523
Sfr274I	CTCGAG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	2 cut(s)	256, 294
SlaI	CTCGAG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	1 cut(s)	75
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	363
StyI	CCWWGG	2 cut(s)	78, 201
TaaI	ACNGT	2 cut(s)	482, 527
TaqI	TCGA	5 cut(s)	10, 238, 416, 469, 531
TasI	AATT	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	3 cut(s)	174, 282, 477
Tru9I	TTAA	3 cut(s)	174, 282, 477
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	195, 329
Van91I	CCANNNNNTGG	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	256, 294
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.