Rh7DG359400
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001874
Physical Location & Seq
Reverse (-)
47868537 .. 47872247
3711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG359400.1

Sequence Viewer

Length: 441 bp
ATGACATTGGTAAAGATCTTTAAACAAACCCAAAATTGCCTTCTTCCTATGGGGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGATCAAGAACAGGCTGCAGTTGACTCTCATAGAAAGGCAGTTGTTGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGTCAACCAAGGTGTTTGAGATTGCAAAGGCTATGGCTTGGGTTCCAGTTGGAGCAGACAGGAATAAGACATATCTTCATCTTAACCAATGGATACCAGATGAACTTAAATTTGATCTGAACTGCCTTCTGTATACACATGGTAAGCTCTGCCGCAAGTGCATCAAGAAAGGAGGTAGCACTGGTAAGCAGCAAGAAAAGGAATACGAGGATATCAATTCCAACTTCATGTATGCAATCTGCAATGAAGTCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

146

Amino Acids

16.5

Weight (kDa)

8.51

Isoelectric Point (pI)

26.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 15 - 68 4.3e-15 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 317
AciI CCGC 1 cut(s) 337
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 293
AgsI TTSAA 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
AlwI GGATC 1 cut(s) 108
ApeKI GCWGC 3 cut(s) 113, 152, 373
ApoI RAATTY 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 49
BbvI GCAGC 3 cut(s) 100, 139, 385
BcgI CGANNNNNNTGC 1 cut(s) 415
BciVI GTATCC 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 114
BfuI GTATCC 1 cut(s) 270
BglII AGATCT 1 cut(s) 15
BisI GCNGC 4 cut(s) 114, 153, 337, 374
BlsI GCNGC 4 cut(s) 115, 154, 338, 375
BmiI GGNNCC 1 cut(s) 228
BmsI GCATC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 192
Bse1I ACTGG 2 cut(s) 230, 370
Bse3DI GCAATG 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 230, 370
BseXI GCAGC 3 cut(s) 100, 139, 385
Bsp143I GATC 3 cut(s) 15, 100, 298
BspACI CCGC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 2 cut(s) 230, 370
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 3 cut(s) 15, 100, 298
BssNAI GTATAC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 192
Bst1107I GTATAC 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 61
BstEII GGTNACC 1 cut(s) 55
BstKTI GATC 3 cut(s) 18, 103, 301
BstMBI GATC 3 cut(s) 15, 100, 298
BstMWI GCNNNNNNNGC 3 cut(s) 143, 152, 342
BstPI GGTNACC 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 100, 139, 385
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BstZ17I GTATAC 1 cut(s) 318
BsuI GTATCC 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 363
CviAII CATG 2 cut(s) 323, 412
CviJI RGCY 4 cut(s) 113, 215, 221, 331
CviKI_1 RGCY 4 cut(s) 113, 215, 221, 331
DdeI CTNAG 1 cut(s) 61
DpnI GATC 3 cut(s) 17, 102, 300
DpnII GATC 3 cut(s) 15, 100, 298
DraI TTTAAA 2 cut(s) 22, 166
Eco130I CCWWGG 1 cut(s) 192
Eco32I GATATC 1 cut(s) 397
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 326, 415
FaiI YATR 8 cut(s) 50, 129, 218, 256, 318, 324, 413, 417
FatI CATG 2 cut(s) 322, 411
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 4 cut(s) 114, 153, 337, 374
Fsp4HI GCNGC 4 cut(s) 114, 153, 337, 374
GluI GCNGC 4 cut(s) 114, 153, 337, 374
Hin1II CATG 2 cut(s) 326, 415
HincII GTYRAC 2 cut(s) 121, 189
HindII GTYRAC 2 cut(s) 121, 189
HinfI GANTC 1 cut(s) 122
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 3 cut(s) 121, 189, 318
Hpy188I TCNGA 2 cut(s) 64, 303
Hpy188III TCNNGA 2 cut(s) 104, 349
Hpy8I GTNNAC 3 cut(s) 121, 189, 318
HpyAV CCTTC 2 cut(s) 50, 320
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 5 cut(s) 116, 209, 345, 419, 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 152, 342
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 2 cut(s) 326, 415
Kzo9I GATC 3 cut(s) 15, 100, 298
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 8 cut(s) 83, 95, 141, 195, 229, 243, 294, 351
Lsp1109I GCAGC 3 cut(s) 100, 139, 385
LweI GCATC 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 17, 102, 300
MboI GATC 3 cut(s) 15, 100, 298
MboII GAAGA 2 cut(s) 35, 251
MflI RGATCY 1 cut(s) 15
MluCI AATT 4 cut(s) 34, 174, 293, 400
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 214, 429
MnlI CCTC 3 cut(s) 70, 350, 385
MseI TTAA 4 cut(s) 21, 165, 267, 291
MwoI GCNNNNNNNGC 3 cut(s) 143, 152, 342
NdeII GATC 3 cut(s) 15, 100, 298
NlaIII CATG 2 cut(s) 326, 415
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 55
PkrI GCNGC 4 cut(s) 115, 154, 338, 375
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 228
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 15
SaqAI TTAA 4 cut(s) 21, 165, 267, 291
SatI GCNGC 4 cut(s) 114, 153, 337, 374
Sau3AI GATC 3 cut(s) 15, 100, 298
SchI GAGTC 1 cut(s) 116
SetI ASST 4 cut(s) 62, 198, 333, 361
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 114
Sse9I AATT 4 cut(s) 34, 174, 293, 400
SsiI CCGC 1 cut(s) 337
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 88
TasI AATT 4 cut(s) 34, 174, 293, 400
TauI GCSGC 1 cut(s) 339
Tru1I TTAA 4 cut(s) 21, 165, 267, 291
Tru9I TTAA 4 cut(s) 21, 165, 267, 291
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 113, 152, 373
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 186, 251, 300, 400
TspRI CASTG 1 cut(s) 370
XapI RAATTY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.