Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001874

Physical Location & Seq

Genomic Coordinates Reverse (-)

32637228 .. 32642565

Gene Structure 5338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG187100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGACATTGGTAAAGATCTTTAAACAAACCCATAATTGCCTTCTTCCTATGGGGGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTAAGTTGATAACTCTGCTACCGTGCTATTATAACCTGGTAACTATTTTCCAGGTGCTAGAGTCGAGGGAGGCTGAGGATGGGATTGATGAGAATGATTCAGTCGCTATGATGAGGACTACTGAGGAAGCCTTGGAAGCACAGAAAAATTGCAAAAACCATCATTTGAGATATCTGGAAAACTTGCTGCTGAAACCAATAGATTCAGGGCCTCCCAATGACAATGTCCAACCCCAAACTCAACCTGAGGCGGTTCAAGCTGATGGTGTTCAACCTAAACAAGTTCCAACACCTAACTTTGTGCTTATTATGCAGTCACAACATACCAGCAATGTTTTCCAGCCAACACATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

157

Amino Acids

17.69

Weight (kDa)

6.57

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04710 AT2G33150
fragaria_vesca	FvH4_4g00310
malus_domestica	MD04G1003800.v1.1
prunus_persica	Prupe.1G003300_v2.0.a1 Prupe.1G003300_v2.0.a1
pyrus_communis	pycom04g00390
rosa_chinensis	RchiOBHm_Chr4g0385141 RchiOBHm_Chr4g0415491 RchiOBHm_Chr6g0275511
rosa_laevigata	RLG00000005750 RLG00000010254
rosa_multiflora	Rmu_sc0003086.1_g000005 Rmu_sc0008734.1_g000018 Rmu_sc0010556.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010730 Rroxscaffold_1G00018720 Rroxscaffold_1G00054220 Rroxscaffold_3G00240070 Rroxscaffold_5G00333060 Rroxscaffold_5G00355890 Rroxscaffold_6G00390920
rosa_rugosa	Rorug03G0299900
rosa_samantha	Rh1BG085600 Rh2BG386800 Rh2BG500100 Rh2DG511300 Rh4AG003100 Rh4BG002500 Rh4BG187100 Rh4CG003300 Rh4DG002800 Rh5AG250800 Rh5AG295600 Rh5AG385400 Rh5AG466200 Rh5BG246000 Rh5DG254500 Rh6DG201600 Rh7CG178800 Rh7CG381300 Rh7DG359400
rosa_wichuraiana	Rw3G018530 Rw4G000620 Rw7G039000 Rw7G041060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AciI	CCGC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	94, 374, 389
AjnI	CCWGG	2 cut(s)	153, 168
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	114, 304
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	101, 291
BccI	CCATC	3 cut(s)	191, 285, 374
BciT130I	CCWGG	2 cut(s)	155, 170
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	115
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	2 cut(s)	115, 305
BlsI	GCNGC	2 cut(s)	116, 306
Bme1390I	CCNGG	2 cut(s)	155, 170
BmgT120I	GGNCC	1 cut(s)	326
BmrFI	CCNGG	2 cut(s)	155, 170
Bpu10I	CCTNAGC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse21I	CCTNAGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	155, 170
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	4 cut(s)	76, 183, 231, 354
BseXI	GCAGC	2 cut(s)	101, 291
BshFI	GGCC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	53
BsnI	GGCC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	15, 107
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	4 cut(s)	75, 184, 232, 355
BspMAI	CTGCAG	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	15, 107
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	155, 170
Bst4CI	ACNGT	2 cut(s)	89, 141
BstDEI	CTNAG	4 cut(s)	62, 192, 240, 363
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	2 cut(s)	18, 110
BstMBI	GATC	2 cut(s)	15, 107
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 374, 427
BstNI	CCWGG	2 cut(s)	155, 170
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	153, 168
BstSFI	CTRYAG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	101, 291
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
Bsu36I	CCTNAGG	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	326
CsiI	ACCWGGT	1 cut(s)	153
CviJI	RGCY	6 cut(s)	114, 191, 248, 328, 377, 460
CviKI_1	RGCY	6 cut(s)	114, 191, 248, 328, 377, 460
DdeI	CTNAG	4 cut(s)	62, 192, 240, 363
DpnI	GATC	2 cut(s)	17, 109
DpnII	GATC	2 cut(s)	15, 107
DraI	TTTAAA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	290
Eco81I	CCTNAGG	1 cut(s)	363
Eco91I	GGTNACC	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	153, 168
EcoRV	GATATC	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaiI	YATR	6 cut(s)	33, 50, 150, 227, 428, 441
Fnu4HI	GCNGC	2 cut(s)	115, 305
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	115, 305
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	2 cut(s)	115, 305
HaeIII	GGCC	1 cut(s)	328
HinfI	GANTC	3 cut(s)	179, 215, 320
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	89, 141
HpyCH4V	TGCA	3 cut(s)	117, 270, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 374, 427
HpyF3I	CTNAG	4 cut(s)	62, 192, 240, 363
Kzo9I	GATC	2 cut(s)	15, 107
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	2 cut(s)	101, 291
MabI	ACCWGGT	1 cut(s)	153
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	3 cut(s)	56, 157, 432
MalI	GATC	2 cut(s)	17, 109
MboI	GATC	2 cut(s)	15, 107
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	15
MluCI	AATT	2 cut(s)	34, 265
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	370, 428
MnlI	CCTC	8 cut(s)	71, 177, 181, 187, 225, 235, 339, 358
MseI	TTAA	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	155, 170
MvaI	CCWGG	2 cut(s)	155, 170
MwoI	GCNNNNNNNGC	3 cut(s)	254, 374, 427
NdeII	GATC	2 cut(s)	15, 107
NmuCI	GTSAC	2 cut(s)	56, 432
PfeI	GAWTC	2 cut(s)	215, 320
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	116, 306
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	153, 168
PspEI	GGTNACC	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	153, 168
PspPI	GGNCC	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	15
PsyI	GACNNNGTC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	2 cut(s)	115, 305
Sau3AI	GATC	2 cut(s)	15, 107
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	155, 170
SetI	ASST	7 cut(s)	63, 156, 174, 364, 379, 394, 412
SexAI	ACCWGGT	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	115
Sse9I	AATT	2 cut(s)	34, 265
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	153, 168
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	89, 141
TaqI	TCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	34, 265
TfiI	GAWTC	2 cut(s)	215, 320
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	56, 432
TseI	GCWGC	2 cut(s)	114, 304
Tsp45I	GTSAC	2 cut(s)	56, 432
Tth111I	GACNNNGTC	1 cut(s)	341
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.