FvH4_4g00310

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
310866 .. 315007
4142 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00310.t1

Sequence Viewer

Length: 1377 bp
ATGGAGAAAGCGATCAACAGGCAGAAGGTTCTCCTCGACCATCTCCGACCTTCTTCTTCTTCCGACGACTCTTCTCTCTCCGCGTCGGTATGTGCGGCGGGGGATAGCGCTGCCTATGCTAGGAATCATGTCTTTGGGGACGATGTCGTCATCGTTGCAGCTTATCGCACTCCACTCTGCAAGGCTAAGCGTGGCGGCTTCAAGGATACTTACGCTGATGATCTCCTCGCACCTGTCCTCAAGGCCGTGGTTGAGAAAACCAATCTCAATCCCAAGGAAGTTGGGGATATTGTTGTCGGTACCGTCTTGGCCCCAGGATCTCAGAGAGCTAGCGAATGCAGGATGGCTGCTTTCTATGCTGGCTTCCCTGAGACTGTGCCGGTTAGAACTGTGAACAGACAATGTTCGTCTGGCCTCCAAGCAGTTGCTGATGTTGCTGCTGCCATTAGAGCAGGGTTTTATGATATTGGCATTGGTGCTGGTTTGGAATCCATGACTGCAAACCCAATGGCATGGGAAGGGGATGTTAATCCTAAAGTAAAGATCTTTGAACAAGCCCAGAATTGCCTTCTTCCTATGGGAATCACCTCAGAAAATGTTGCTCATCGTTTTGGTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGCAGCTGCTGCTACTGCTGCTGGTAGATTTAAAGATGAAATCATCCCTGTGGCAACCAAGATTGTTGATCCAAAATCTGGTGATGAGAAACCTGTTACAATCTCTGTTGATGATGGGATTCGAAACACAACATTGGCGGACCTAGCAAAACTGAAGCCTGTGTTTAAGAAAGATGGGACCACCACTGCTGGTAATTCTAGTCAAGTTAGTGATGGTGCTGGAGCTGTTCTCTTGATGAAGAGAAGTGTTGCCGACCAAAAAGGATTGCCGATTCTTGGTGTTTTCAGGAGTTTTGTTGCTGTTGGTGTGGATCCTGCCATCATGGGTGTTGGCCCAGCTGCTGCAATTCCAGTTGCAGTCAAGGCAGCTGGTTTAGAGCTTGATGATATTGACCTTTTTGAGATAAATGAGGCTTTTGCATCCCAATTCGTGTATTGCCGTAACAAGCTGGGACTTGATCCAGAAAAAATCAATGTTAACGGAGGTGCAATGGCCATTGGCCATCCACTTGGTGCAACTGGTGCCCGTTGTGTTGCCACTCTTTTGCATGAGATGAAGCGTCGTGGTAAAGACTGCCGCTATGGAGTGATCTCAATGTGCATAGGCACAGGGATGGGTGCAGCTGCCGTTTTTGAAAGAGGAGACCGGACCGATGAACTCTGCAATGCTCGCAAGGTCGATTCGCTCAACTTCTTATCCAAGGATGCTCGATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

459

Amino Acids

48.25

Weight (kDa)

7.52

Isoelectric Point (pI)

27.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 49 - 303 1.7e-77 Thiolase, N-terminal domain
Thiolase_C PF02803 311 - 434 2.7e-48 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 2 cut(s) 299, 1184
AccB7I CCANNNNNTGG 1 cut(s) 740
AccII CGCG 1 cut(s) 83
AciI CCGC 6 cut(s) 81, 95, 98, 195, 800, 1240
AclWI GGATC 5 cut(s) 325, 725, 968, 981, 1115
AcoI YGGCCR 2 cut(s) 1155, 1162
AcuI CTGAAG 1 cut(s) 836
AdeI CACNNNGTG 1 cut(s) 1175
AfaI GTAC 1 cut(s) 301
AfeI AGCGCT 1 cut(s) 109
AfiI CCNNNNNNNGG 3 cut(s) 120, 740, 938
AgsI TTSAA 4 cut(s) 202, 551, 621, 1298
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 9 cut(s) 161, 329, 668, 887, 1001, 1031, 1042, 1111, 1286
AluI AGCT 9 cut(s) 161, 329, 668, 887, 1001, 1031, 1042, 1111, 1286
Alw26I GTCTC 2 cut(s) 365, 1299
AlwI GGATC 5 cut(s) 325, 725, 968, 981, 1115
AlwNI CAGNNNCTG 3 cut(s) 428, 671, 1004
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 6 cut(s) 243, 309, 412, 994, 1155, 1162
Asp718I GGTACC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 5 cut(s) 310, 802, 840, 995, 1311
AsuHPI GGTGA 2 cut(s) 577, 755
AsuII TTCGAA 1 cut(s) 784
AsuNHI GCTAGC 1 cut(s) 329
AvaII GGWCC 3 cut(s) 802, 840, 1311
BaeGI GKGCMC 1 cut(s) 1189
BalI TGGCCA 2 cut(s) 1157, 1164
BamHI GGATCC 1 cut(s) 973
BanI GGYRCC 2 cut(s) 299, 1184
BccI CCATC 8 cut(s) 48, 337, 770, 830, 869, 989, 1173, 1270
BceAI ACGGC 3 cut(s) 230, 1086, 1274
BciT130I CCWGG 1 cut(s) 315
BciVI GTATCC 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 365, 1299
BfaI CTAG 4 cut(s) 120, 330, 806, 861
BfmI CTRYAG 1 cut(s) 642
BfoI RGCGCY 1 cut(s) 111
BfuI GTATCC 1 cut(s) 199
BglII AGATCT 1 cut(s) 543
BlpI GCTNAGC 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 3 cut(s) 802, 840, 1311
BmgT120I GGNCC 5 cut(s) 310, 802, 840, 995, 1311
BmiI GGNNCC 5 cut(s) 301, 312, 841, 975, 1186
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 1091, 1357
BmtI GCTAGC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 876, 908
BpmI CTGGAG 1 cut(s) 903
Bpu1102I GCTNAGC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 784
BpuEI CTTGAG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 528
BsaI GGTCTC 1 cut(s) 1299
BsaJI CCNNGG 4 cut(s) 246, 273, 313, 1362
BsaWI WCCGGW 1 cut(s) 1308
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 740, 938
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 1013, 1186
Bse3DI GCAATG 2 cut(s) 1158, 1333
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 246, 273, 313, 1362
BseGI GGATG 7 cut(s) 348, 529, 705, 1082, 1165, 1281, 1372
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 3 cut(s) 120, 740, 938
BseMI GCAATG 2 cut(s) 1158, 1333
BseMII CTCAG 3 cut(s) 335, 360, 603
BseNI ACTGG 2 cut(s) 1013, 1186
BseRI GAGGAG 3 cut(s) 23, 215, 1317
BseSI GKGCMC 1 cut(s) 1189
BseYI CCCAGC 2 cut(s) 997, 1111
BsgI GTGCAG 1 cut(s) 1302
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 6 cut(s) 245, 311, 414, 996, 1157, 1164
BshNI GGYRCC 2 cut(s) 299, 1184
BsiSI CCGG 2 cut(s) 380, 1309
BslFI GGGAC 3 cut(s) 152, 853, 1128
BslI CCNNNNNNNGG 3 cut(s) 120, 740, 938
BsmAI GTCTC 2 cut(s) 365, 1299
BsmFI GGGAC 3 cut(s) 152, 853, 1128
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 6 cut(s) 245, 311, 414, 996, 1157, 1164
Bso31I GGTCTC 1 cut(s) 1299
Bsp119I TTCGAA 1 cut(s) 784
Bsp1286I GDGCHC 1 cut(s) 1189
Bsp143I GATC 9 cut(s) 12, 220, 317, 543, 634, 730, 973, 1120, 1251
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 6 cut(s) 81, 95, 98, 195, 800, 1240
BspANI GGCC 6 cut(s) 245, 311, 414, 996, 1157, 1164
BspCNI CTCAG 3 cut(s) 334, 361, 602
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 5 cut(s) 301, 312, 841, 975, 1186
BspMAI CTGCAG 1 cut(s) 646
BspOI GCTAGC 1 cut(s) 333
BspPI GGATC 5 cut(s) 325, 725, 968, 981, 1115
BspT104I TTCGAA 1 cut(s) 784
BspT107I GGYRCC 2 cut(s) 299, 1184
BspTNI GGTCTC 1 cut(s) 1299
BsrDI GCAATG 2 cut(s) 1158, 1333
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 2 cut(s) 1013, 1186
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 4 cut(s) 246, 273, 313, 1362
BssMI GATC 9 cut(s) 12, 220, 317, 543, 634, 730, 973, 1120, 1251
BssT1I CCWWGG 2 cut(s) 273, 1362
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 304, 376, 391
Bst6I CTCTTC 2 cut(s) 76, 896
BstAPI GCANNNNNTGC 2 cut(s) 671, 1184
BstBI TTCGAA 1 cut(s) 784
BstC8I GCNNGC 3 cut(s) 331, 361, 1333
BstDEI CTNAG 4 cut(s) 186, 321, 369, 589
BstDSI CCRYGG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 7 cut(s) 348, 529, 705, 1082, 1165, 1281, 1372
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 9 cut(s) 15, 223, 320, 546, 637, 733, 976, 1123, 1254
BstMAI GTCTC 2 cut(s) 365, 1299
BstMBI GATC 9 cut(s) 12, 220, 317, 543, 634, 730, 973, 1120, 1251
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 642
BstSLI GKGCMC 1 cut(s) 1189
BstUI CGCG 1 cut(s) 83
BstX2I RGATCY 3 cut(s) 317, 543, 973
BstXI CCANNNNNNTGG 2 cut(s) 513, 1172
BstYI RGATCY 3 cut(s) 317, 543, 973
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 6 cut(s) 245, 311, 414, 996, 1157, 1164
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 7 cut(s) 348, 529, 705, 1082, 1165, 1281, 1372
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 1 cut(s) 846
Cac8I GCNNGC 3 cut(s) 331, 361, 1333
CaiI CAGNNNCTG 3 cut(s) 428, 671, 1004
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 5 cut(s) 310, 802, 840, 995, 1311
CpoI CGGWCCG 1 cut(s) 1311
CseI GACGC 2 cut(s) 72, 1211
Csp6I GTAC 1 cut(s) 300
CspI CGGWCCG 1 cut(s) 1311
CviAII CATG 5 cut(s) 128, 493, 513, 985, 1211
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 4 cut(s) 186, 321, 369, 589
DpnI GATC 9 cut(s) 14, 222, 319, 545, 636, 732, 975, 1122, 1253
DpnII GATC 9 cut(s) 12, 220, 317, 543, 634, 730, 973, 1120, 1251
DraI TTTAAA 1 cut(s) 694
DraIII CACNNNGTG 1 cut(s) 1175
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 2 cut(s) 1155, 1162
Eam1104I CTCTTC 2 cut(s) 76, 896
EarI CTCTTC 2 cut(s) 76, 896
EciI GGCGGA 1 cut(s) 815
Eco130I CCWWGG 2 cut(s) 273, 1362
Eco31I GGTCTC 1 cut(s) 1299
Eco47I GGWCC 3 cut(s) 802, 840, 1311
Eco47III AGCGCT 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 836
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 273, 1362
ErhI CCWWGG 2 cut(s) 273, 1362
FaeI CATG 5 cut(s) 131, 496, 516, 988, 1214
FaqI GGGAC 3 cut(s) 152, 853, 1128
FatI CATG 5 cut(s) 127, 492, 512, 984, 1210
FauI CCCGC 1 cut(s) 91
FokI GGATG 6 cut(s) 355, 536, 692, 1069, 1152, 1288
FspBI CTAG 4 cut(s) 120, 330, 806, 861
GlaI GCGC 1 cut(s) 109
GsaI CCCAGC 2 cut(s) 1001, 1115
GsuI CTGGAG 1 cut(s) 903
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 6 cut(s) 245, 311, 414, 996, 1157, 1164
HapII CCGG 2 cut(s) 380, 1309
HgaI GACGC 2 cut(s) 72, 1211
HhaI GCGC 1 cut(s) 110
Hin1II CATG 5 cut(s) 131, 496, 516, 988, 1214
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 2 cut(s) 649, 1141
HindII GTYRAC 2 cut(s) 649, 1141
HinfI GANTC 8 cut(s) 68, 124, 488, 582, 650, 781, 934, 1343
HpaI GTTAAC 1 cut(s) 1141
HpaII CCGG 2 cut(s) 380, 1309
HphI GGTGA 2 cut(s) 577, 755
Hpy166II GTNNAC 3 cut(s) 394, 649, 1141
Hpy188I TCNGA 4 cut(s) 47, 64, 324, 592
Hpy188III TCNNGA 3 cut(s) 895, 949, 1124
Hpy8I GTNNAC 3 cut(s) 394, 649, 1141
Hpy99I CGWCG 3 cut(s) 68, 88, 1227
HpyAV CCTTC 4 cut(s) 19, 60, 512, 578
HpyCH4III ACNGT 3 cut(s) 304, 376, 391
HpyF3I CTNAG 4 cut(s) 186, 321, 369, 589
Hsp92II CATG 5 cut(s) 131, 496, 516, 988, 1214
HspAI GCGC 1 cut(s) 108
KpnI GGTACC 1 cut(s) 303
KspAI GTTAAC 1 cut(s) 1141
Kzo9I GATC 9 cut(s) 12, 220, 317, 543, 634, 730, 973, 1120, 1251
LmnI GCTCC 2 cut(s) 628, 884
LweI GCATC 2 cut(s) 1091, 1357
MaeI CTAG 4 cut(s) 120, 330, 806, 861
MaeIII GTNAC 2 cut(s) 757, 1103
MalI GATC 9 cut(s) 14, 222, 319, 545, 636, 732, 975, 1122, 1253
MboI GATC 9 cut(s) 12, 220, 317, 543, 634, 730, 973, 1120, 1251
MboII GAAGA 6 cut(s) 45, 48, 51, 63, 563, 913
MflI RGATCY 3 cut(s) 317, 543, 973
MhlI GDGCHC 1 cut(s) 1189
MlsI TGGCCA 2 cut(s) 1157, 1164
MluCI AATT 4 cut(s) 562, 856, 1008, 1088
MluNI TGGCCA 2 cut(s) 1157, 1164
MlyI GAGTC 2 cut(s) 62, 644
MmeI TCCRAC 2 cut(s) 70, 87
MnlI CCTC 8 cut(s) 44, 236, 248, 425, 598, 1066, 1139, 1295
Mox20I TGGCCA 2 cut(s) 1157, 1164
MscI TGGCCA 2 cut(s) 1157, 1164
MseI TTAA 4 cut(s) 528, 693, 828, 1140
MslI CAYNNNNRTG 2 cut(s) 710, 1274
Msp20I TGGCCA 2 cut(s) 1157, 1164
MspA1I CMGCKG 4 cut(s) 668, 1001, 1031, 1286
MspI CCGG 2 cut(s) 380, 1309
MspR9I CCNGG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 83
NdeII GATC 9 cut(s) 12, 220, 317, 543, 634, 730, 973, 1120, 1251
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 5 cut(s) 131, 496, 516, 988, 1214
NlaIV GGNNCC 5 cut(s) 301, 312, 841, 975, 1186
NspV TTCGAA 1 cut(s) 784
PctI GAATGC 1 cut(s) 341
PfeI GAWTC 6 cut(s) 124, 488, 582, 781, 934, 1343
PflFI GACNNNGTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 740
PleI GAGTC 2 cut(s) 62, 644
PpsI GAGTC 2 cut(s) 62, 644
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 2 cut(s) 997, 1111
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 5 cut(s) 301, 312, 841, 975, 1186
PspPI GGNCC 5 cut(s) 310, 802, 840, 995, 1311
PstI CTGCAG 1 cut(s) 646
PstNI CAGNNNCTG 3 cut(s) 428, 671, 1004
PsuI RGATCY 3 cut(s) 317, 543, 973
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 4 cut(s) 668, 1001, 1031, 1286
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 2 cut(s) 710, 1274
Rsr2I CGGWCCG 1 cut(s) 1311
RsrII CGGWCCG 1 cut(s) 1311
SaqAI TTAA 4 cut(s) 528, 693, 828, 1140
Sau3AI GATC 9 cut(s) 12, 220, 317, 543, 634, 730, 973, 1120, 1251
Sau96I GGNCC 5 cut(s) 310, 802, 840, 995, 1311
SchI GAGTC 2 cut(s) 62, 644
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 1189
SfaNI GCATC 2 cut(s) 1091, 1357
SfcI CTRYAG 1 cut(s) 642
SfuI TTCGAA 1 cut(s) 784
SinI GGWCC 3 cut(s) 802, 840, 1311
SmiMI CAYNNNNRTG 2 cut(s) 710, 1274
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 4 cut(s) 562, 856, 1008, 1088
SsiI CCGC 6 cut(s) 81, 95, 98, 195, 800, 1240
SspMI CTAG 4 cut(s) 120, 330, 806, 861
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 2 cut(s) 273, 1362
TaaI ACNGT 3 cut(s) 304, 376, 391
TaqI TCGA 4 cut(s) 36, 784, 1341, 1372
TaqII GACCGA 1 cut(s) 1328
TasI AATT 4 cut(s) 562, 856, 1008, 1088
TauI GCSGC 3 cut(s) 98, 198, 1242
TfiI GAWTC 6 cut(s) 124, 488, 582, 781, 934, 1343
Tru1I TTAA 4 cut(s) 528, 693, 828, 1140
Tru9I TTAA 4 cut(s) 528, 693, 828, 1140
TscAI CASTG 1 cut(s) 853
TspDTI ATGAA 4 cut(s) 714, 914, 1232, 1332
TspGWI ACGGA 1 cut(s) 1158
TspRI CASTG 1 cut(s) 853
Tth111I GACNNNGTC 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 740
VpaK11BI GGWCC 3 cut(s) 802, 840, 1311
XagI CCTNNNNNAGG 1 cut(s) 118
XspI CTAG 4 cut(s) 120, 330, 806, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.