RLG00000005750

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001874
Physical Location & Seq
Reverse (-)
1457997 .. 1460147
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005750

Sequence Viewer

Length: 438 bp
ATGGGGGTCACCTCGGAAAATGTTGCTCATCGTTTTAGTGTTTCAAGGCAGGAGCAAGATCAGGCTATTGTTGATCCAAAATCTGGTGATGAGAAACCTCTTACAATCTCTGTTGCTGATGGGATTGGAAACACAACATTGTCCGACCTAGCAAAGCTGAAGCCTGTGTTTAAGAAAGATGGGGACCACCACTGCTGTCCGAATTCATTGAGGATGGCTTCCTCTACTAAACCGAGGGCTTGTCTGAAGCCCAATTCTGAAATTGGTATTGGTTCTCGCGCTTGTCTGAAGCCGAACACTATTTGGGGCCGCTCTGTCCAAAAACAAAAAATTTACTCGCGTGGTCTGACGCCAATTGCAAAAAACACTCTAGAACAGCCCAACTCTAACCAGACAGAAAGCAAGCCTCAGGTTGAGGATTTGCGCTGGCCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

146

Amino Acids

15.92

Weight (kDa)

9.3

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 83
AccBSI CCGCTC 1 cut(s) 312
AccII CGCG 2 cut(s) 279, 340
AciI CCGC 1 cut(s) 310
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 428
AcsI RAATTY 2 cut(s) 202, 330
AcuI CTGAAG 3 cut(s) 179, 266, 308
AcyI GRCGYC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
AlwI GGATC 1 cut(s) 68
AoxI GGCC 2 cut(s) 307, 428
ApoI RAATTY 2 cut(s) 202, 330
AspLEI GCGC 2 cut(s) 281, 426
AspS9I GGNCC 2 cut(s) 184, 307
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 408
BccI CCATC 3 cut(s) 113, 173, 208
BfaI CTAG 2 cut(s) 149, 371
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 184, 307
BmiI GGNNCC 2 cut(s) 185, 308
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 12, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse21I CCTNAGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 12, 233
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 422
Bsh1236I CGCG 2 cut(s) 279, 340
BshFI GGCC 2 cut(s) 309, 430
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 2 cut(s) 309, 430
Bsp143I GATC 2 cut(s) 58, 73
BspACI CCGC 1 cut(s) 310
BspANI GGCC 2 cut(s) 309, 430
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 2 cut(s) 279, 340
BspLI GGNNCC 2 cut(s) 185, 308
BspPI GGATC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 12, 233
BssMI GATC 2 cut(s) 58, 73
BssNI GRCGYC 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 404, 428
BstDEI CTNAG 1 cut(s) 408
BstEII GGTNACC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 2 cut(s) 279, 340
BstHHI GCGC 2 cut(s) 281, 426
BstKTI GATC 2 cut(s) 61, 76
BstMBI GATC 2 cut(s) 58, 73
BstPI GGTNACC 1 cut(s) 7
BstUI CGCG 2 cut(s) 279, 340
Bsu36I CCTNAGG 1 cut(s) 408
BsuRI GGCC 2 cut(s) 309, 430
BtsCI GGATG 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 2 cut(s) 404, 428
CfoI GCGC 2 cut(s) 281, 426
Cfr13I GGNCC 2 cut(s) 184, 307
CseI GACGC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 408
DpnI GATC 2 cut(s) 60, 75
DpnII GATC 2 cut(s) 58, 73
EaeI YGGCCR 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 3 cut(s) 179, 266, 308
Eco81I CCTNAGG 1 cut(s) 408
Eco91I GGTNACC 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 202
FaqI GGGAC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 310
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 310
FspBI CTAG 2 cut(s) 149, 371
GlaI GCGC 2 cut(s) 280, 425
GluI GCNGC 1 cut(s) 310
HaeIII GGCC 2 cut(s) 309, 430
HgaI GACGC 1 cut(s) 358
HhaI GCGC 2 cut(s) 281, 426
Hin1I GRCGYC 1 cut(s) 350
Hin6I GCGC 2 cut(s) 279, 424
HinP1I GCGC 2 cut(s) 279, 424
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 7 cut(s) 16, 145, 201, 246, 259, 288, 348
Hpy188III TCNNGA 1 cut(s) 371
HpyCH4V TGCA 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 408
Hsp92I GRCGYC 1 cut(s) 350
HspAI GCGC 2 cut(s) 279, 424
Kzo9I GATC 2 cut(s) 58, 73
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 7 cut(s) 35, 47, 69, 177, 395, 404, 412
MaeI CTAG 2 cut(s) 149, 371
MaeIII GTNAC 1 cut(s) 7
MalI GATC 2 cut(s) 60, 75
MbiI CCGCTC 1 cut(s) 312
MboI GATC 2 cut(s) 58, 73
MfeI CAATTG 1 cut(s) 354
MluCI AATT 6 cut(s) 202, 253, 261, 330, 354, 433
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 7 cut(s) 22, 108, 204, 228, 232, 409, 417
MseI TTAA 1 cut(s) 171
MunI CAATTG 1 cut(s) 354
MvnI CGCG 2 cut(s) 279, 340
NdeII GATC 2 cut(s) 58, 73
NlaIV GGNNCC 2 cut(s) 185, 308
NmuCI GTSAC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 83
PkrI GCNGC 1 cut(s) 311
PspEI GGTNACC 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 185, 308
PspPI GGNCC 2 cut(s) 184, 307
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 310
Sau3AI GATC 2 cut(s) 58, 73
Sau96I GGNCC 2 cut(s) 184, 307
SetI ASST 5 cut(s) 14, 100, 150, 159, 414
SinI GGWCC 1 cut(s) 184
Sse9I AATT 6 cut(s) 202, 253, 261, 330, 354, 433
SsiI CCGC 1 cut(s) 310
SspMI CTAG 2 cut(s) 149, 371
TasI AATT 6 cut(s) 202, 253, 261, 330, 354, 433
TauI GCSGC 1 cut(s) 312
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 197
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 1 cut(s) 197
Van91I CCANNNNNTGG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 2 cut(s) 202, 330
XbaI TCTAGA 1 cut(s) 370
XspI CTAG 2 cut(s) 149, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.