Rh2BG386800

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001874
Physical Location & Seq
Forward (+)
54904377 .. 54907486
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG386800.1

Sequence Viewer

Length: 735 bp
ATGGCTGCTTTCTATGCTGGCTTCCCTGAAACTGTGTTGTTTAGAACTGTGAACAGACAATGTTCGTCTGGGCTTCAAGCAGTTGCTGATGTAGCTGCTTCTATAAGAGCAGGGTTTTATGACATTGGTATTGGAGCTGGGTTGGAATCCATGACTGTAAACCCAATGTCATGGGAAGGGGATGATAATCCTAAAGTAAAGATCTTTGAACAAGCCCAGAATTGCCTTCTTCCTATGGGGGTCACCTCGGAAAATGTTGCTCATCGTTTTGGTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGCAGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGGGCAACCAAGTCAAGTTAGTGATGGTGCTGGAGCTGTTCTCTTGATGAAGAGAAGTGTTTCCGACCAAAAAGGAATTCCAATTCTTGGTGTATTCAGCTTGCTGAGTTTGTCTGAGATTTTGATCAAGTACATAGCATTGAAGGAGCAGAAAGTGTTGGACCATGAGAAGGTTCAAGTGGAGCAAGAGAAGACAAGGGTTCAGAAGTTGTTGAATGGGTTGCAGAACTCAATAAACGTTTACAATGCCAGTGGAAATCCCAAAATCTCCAAAGTTTCGAATGCGGCACCGAAACAAATGCACATGGCTCCTCAGTCTCGCCTATCTAATGGGTCTTCTACAGGATATCAAGACATGGGAATGGGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

244

Amino Acids

26.29

Weight (kDa)

8.48

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 2 - 121 8.5e-31 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 649
AccB7I CCANNNNNTGG 1 cut(s) 449
AciI CCGC 1 cut(s) 647
AclI AACGTT 1 cut(s) 600
AcsI RAATTY 1 cut(s) 438
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 2 cut(s) 449, 532
AgsI TTSAA 6 cut(s) 77, 209, 279, 505, 539, 577
AjnI CCWGG 1 cut(s) 361
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AluBI AGCT 5 cut(s) 95, 137, 326, 398, 462
AluI AGCT 5 cut(s) 95, 137, 326, 398, 462
Alw26I GTCTC 1 cut(s) 684
AlwNI CAGNNNCTG 2 cut(s) 86, 329
ApeKI GCWGC 5 cut(s) 5, 95, 299, 323, 332
ApoI RAATTY 1 cut(s) 438
Asp700I GAANNNNTTC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 523
AsuHPI GGTGA 1 cut(s) 235
AsuII TTCGAA 1 cut(s) 641
AvaII GGWCC 1 cut(s) 523
BanI GGYRCC 1 cut(s) 649
BbsI GAAGAC 2 cut(s) 560, 690
BbvI GCAGC 4 cut(s) 82, 286, 319, 335
BccI CCATC 1 cut(s) 380
BcgI CGANNNNNNTGC 2 cut(s) 643, 677
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 684
BfmI CTRYAG 2 cut(s) 300, 702
BglII AGATCT 1 cut(s) 201
BisI GCNGC 6 cut(s) 6, 96, 300, 324, 333, 648
BlsI GCNGC 6 cut(s) 7, 97, 301, 325, 334, 649
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 523
BmiI GGNNCC 3 cut(s) 651, 672, 730
BmrFI CCNGG 1 cut(s) 363
BpiI GAAGAC 2 cut(s) 560, 690
BplI GAGNNNNNCTC 2 cut(s) 387, 419
BpmI CTGGAG 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 641
BsaBI GATNNNNATC 2 cut(s) 186, 485
BsaJI CCNNGG 3 cut(s) 246, 361, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 532
Bse1I ACTGG 1 cut(s) 612
Bse8I GATNNNNATC 2 cut(s) 186, 485
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 246, 361, 362
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 2 cut(s) 186, 485
BseLI CCNNNNNNNGG 2 cut(s) 449, 532
BseMII CTCAG 3 cut(s) 458, 468, 689
BseNI ACTGG 1 cut(s) 612
BseRI GAGGAG 1 cut(s) 663
BseXI GCAGC 4 cut(s) 82, 286, 319, 335
BseYI CCCAGC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 649
BslI CCNNNNNNNGG 2 cut(s) 449, 532
BsmAI GTCTC 1 cut(s) 684
BsmI GAATGC 1 cut(s) 649
Bsp119I TTCGAA 1 cut(s) 641
Bsp143I GATC 3 cut(s) 201, 292, 486
BspACI CCGC 1 cut(s) 647
BspCNI CTCAG 3 cut(s) 459, 469, 688
BspLI GGNNCC 3 cut(s) 651, 672, 730
BspMAI CTGCAG 1 cut(s) 304
BspT104I TTCGAA 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 649
BsrI ACTGG 1 cut(s) 612
BssECI CCNNGG 3 cut(s) 246, 361, 362
BssMI GATC 3 cut(s) 201, 292, 486
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 3 cut(s) 34, 49, 157
Bst6I CTCTTC 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 641
BstC8I GCNNGC 2 cut(s) 19, 464
BstDEI CTNAG 3 cut(s) 467, 477, 675
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 3 cut(s) 204, 295, 489
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 3 cut(s) 201, 292, 486
BstMWI GCNNNNNNNGC 4 cut(s) 14, 92, 329, 332
BstNI CCWGG 1 cut(s) 363
BstPI GGTNACC 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 2 cut(s) 300, 702
BstV1I GCAGC 4 cut(s) 82, 286, 319, 335
BstV2I GAAGAC 2 cut(s) 560, 690
BstX2I RGATCY 1 cut(s) 201
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 1 cut(s) 201
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 2 cut(s) 19, 464
CaiI CAGNNNCTG 2 cut(s) 86, 329
Cfr13I GGNCC 1 cut(s) 523
Csp6I GTAC 1 cut(s) 493
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviAII CATG 5 cut(s) 151, 171, 527, 667, 718
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 3 cut(s) 467, 477, 675
DpnI GATC 3 cut(s) 203, 294, 488
DpnII GATC 3 cut(s) 201, 292, 486
DraI TTTAAA 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco32I GATATC 1 cut(s) 710
Eco47I GGWCC 1 cut(s) 523
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 710
FaeI CATG 5 cut(s) 154, 174, 530, 670, 721
FatI CATG 5 cut(s) 150, 170, 526, 666, 717
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 6 cut(s) 6, 96, 300, 324, 333, 648
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 6 cut(s) 6, 96, 300, 324, 333, 648
GluI GCNGC 6 cut(s) 6, 96, 300, 324, 333, 648
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 414
Hin1II CATG 5 cut(s) 154, 174, 530, 670, 721
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 2 cut(s) 146, 308
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 4 cut(s) 52, 160, 307, 604
Hpy188I TCNGA 4 cut(s) 250, 427, 478, 567
Hpy188III TCNNGA 2 cut(s) 406, 713
Hpy8I GTNNAC 4 cut(s) 52, 160, 307, 604
HpyAV CCTTC 4 cut(s) 170, 236, 499, 526
HpyCH4III ACNGT 3 cut(s) 34, 49, 157
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 3 cut(s) 302, 586, 664
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 92, 329, 332
HpyF3I CTNAG 3 cut(s) 467, 477, 675
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 5 cut(s) 154, 174, 530, 670, 721
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 3 cut(s) 201, 292, 486
LmnI GCTCC 6 cut(s) 134, 286, 395, 508, 544, 676
Lsp1109I GCAGC 4 cut(s) 82, 286, 319, 335
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 203, 294, 488
MboI GATC 3 cut(s) 201, 292, 486
MboII GAAGA 4 cut(s) 221, 424, 565, 690
MflI RGATCY 1 cut(s) 201
MluCI AATT 4 cut(s) 220, 354, 438, 444
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 3 cut(s) 123, 450, 501
MnlI CCTC 2 cut(s) 256, 684
MroXI GAANNNNTTC 1 cut(s) 421
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 722
MspR9I CCNGG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 4 cut(s) 14, 92, 329, 332
NdeII GATC 3 cut(s) 201, 292, 486
NlaIII CATG 5 cut(s) 154, 174, 530, 670, 721
NlaIV GGNNCC 3 cut(s) 651, 672, 730
NmuCI GTSAC 1 cut(s) 241
NspV TTCGAA 1 cut(s) 641
PasI CCCWGGG 1 cut(s) 362
PctI GAATGC 1 cut(s) 649
PdmI GAANNNNTTC 1 cut(s) 421
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 6 cut(s) 7, 97, 301, 325, 334, 649
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Psp1406I AACGTT 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 361
PspEI GGTNACC 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 3 cut(s) 651, 672, 730
PspPI GGNCC 1 cut(s) 523
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 2 cut(s) 86, 329
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 1 cut(s) 722
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 6 cut(s) 6, 96, 300, 324, 333, 648
Sau3AI GATC 3 cut(s) 201, 292, 486
Sau96I GGNCC 1 cut(s) 523
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 363
SetI ASST 9 cut(s) 97, 139, 248, 328, 400, 464, 537, 603, 734
SfcI CTRYAG 2 cut(s) 300, 702
SfuI TTCGAA 1 cut(s) 641
SinI GGWCC 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 722
Sse9I AATT 4 cut(s) 220, 354, 438, 444
SsiI CCGC 1 cut(s) 647
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 3 cut(s) 34, 49, 157
TaiI ACGT 1 cut(s) 603
TaqI TCGA 1 cut(s) 641
TasI AATT 4 cut(s) 220, 354, 438, 444
TatI WGTACW 1 cut(s) 492
TauI GCSGC 1 cut(s) 650
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 5 cut(s) 5, 95, 299, 323, 332
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 366, 425
TspRI CASTG 1 cut(s) 619
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 523
XapI RAATTY 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.