MD04G1003800.v1.1

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
529160 .. 535594
6435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1003800.v1.1.491

Sequence Viewer

Length: 1380 bp
ATGGAGAAAGCGATCAACAGGCAGCGTGTTCTGCTCGACCACCTCCGCCCTCCCTCCGCCGACTCTTCTTCTTCTCTCTCCGCATCGGCATGTGCGGCTGGGGACAGCGCTGCATATGCGAGGACACACGTGTTCGGAGATGATGTGGTGATTGTTGCAGCTTATCGGACTCCGATTTGCAAGGCGAAACGCGGCGGCTTCAAGGATACTCATGCTGATGATCTTCTTGCACCTGTTTTGAAGGCAGTTGTAGAAAGGACCAATGTGAACCCAAGTGAAATTGGAGATATTGTTGTGGGTACAGTGTTGGCTCCAGGATCTCAAAGAGCTAGTGAGTGCAGAATGGCTGCCTTTTATGCTGGCTTCCCTGAGACTGTGCCAATTAGAACCGTGAACAGACAATGTTCATCTGGGCTCCAGGCCGTTGCTGATGTAGCTGCGTCTATAAGGGCAGGATTTTATGATATTGGAATTGGAGCTGGGTTGGAATCTATGACTGCAAATCCAATGGCATGGGAAGGATCAGTTAACCCTAAAGTGAAGATGTTTGAACAAGCCCAGAATTGCCTTCTTCCTATGGGAATCACCTCAGAAAATGTTGCTCATCGATTTGGAGTTTCACGGAAGGAGCAAGATCAGGCTGCAGTTGATTCTCATAGGAAGGCAGCTGCTGCTACTGCTACTGGTAAATTTAAAGACGAAATTATTCCTGTGGCAACCAAGATTGTCGACCCAAAATCTGGTGAGGAGAAACCTGTTACAATTTCTGTTGATGATGGGATTCGGAACACAACATTGGCAGACCTGGCGAAGTTGAAGCCTGTATTTAAGAAAGATGGGAGCACCACTGCTGGCAACTCTAGTCAAGTTAGTGATGGTGCTGGAGCTGTTCTCTTGATGAAGAGAAGCGTAGCTGAGCAAAAAGGATTGCCGATTCTGGGTGTATTCAGGAGTTTTTCTGCTGTTGGTGTGGATCCAGCCATCATGGGTGTTGGCCCAGCTGTTGCAATTCCAGCTGCAGTCAAGGCTGCTGGTTTAGAGCTTGATGATATTGATCTTTTTGAGATAAATGAGGCCTTTGCATCCCAATATCTCTATTGCCGTAACAAGTTGGGCCTTGATCCAGAAAAGATCAATGTTAATGGAGGTGCACTTGCCATTGGGCATCCACTTGGTGCAACAGGTGCTCGCGCTGTTGCCACTTTATTGCACGAGATGAAGCGACGAGGAAAGGACTGCCGCTTTGGAGTGATATCAATGTGCATAGGCACAGGGATGGGGGCAGCAGCTGTTTTCGAAAGGGGGGACTCTGTCGACGGACTGTGTAATGCGCGCAAAGTTGAATCCCACATTCATCTTTTGTCCAAGGATGCTAGGTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

48.15

Weight (kDa)

8.29

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 49 - 303 1.3e-77 Thiolase, N-terminal domain
Thiolase_C PF02803 311 - 434 3.3e-49 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 740
AccI GTMKAC 2 cut(s) 729, 1314
AccII CGCG 3 cut(s) 192, 1191, 1333
AciI CCGC 7 cut(s) 46, 57, 81, 95, 192, 195, 1240
AclWI GGATC 5 cut(s) 325, 529, 968, 981, 1115
AcsI RAATTY 1 cut(s) 689
AcvI CACGTG 1 cut(s) 130
AdeI CACNNNGTG 1 cut(s) 1175
AfaI GTAC 1 cut(s) 301
AfeI AGCGCT 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 740, 938
AflIII ACRYGT 2 cut(s) 127, 129
AgsI TTSAA 5 cut(s) 202, 241, 551, 817, 1343
AjnI CCWGG 3 cut(s) 313, 417, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
Alw21I GWGCWC 3 cut(s) 845, 1153, 1189
Alw26I GTCTC 1 cut(s) 365
Alw44I GTGCAC 1 cut(s) 1149
AlwI GGATC 5 cut(s) 325, 529, 968, 981, 1115
AlwNI CAGNNNCTG 2 cut(s) 671, 1289
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 4 cut(s) 420, 994, 1074, 1114
ApaLI GTGCAC 1 cut(s) 1149
ApoI RAATTY 1 cut(s) 689
ArsI GACNNNNNNTTYG 2 cut(s) 1226, 1258
Asp700I GAANNNNTTC 1 cut(s) 705
AspLEI GCGC 4 cut(s) 110, 1193, 1333, 1335
AspS9I GGNCC 3 cut(s) 258, 995, 1114
AsuHPI GGTGA 3 cut(s) 160, 577, 755
AsuII TTCGAA 1 cut(s) 1296
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 1153
BamHI GGATCC 1 cut(s) 973
BanII GRGCYC 1 cut(s) 417
BauI CACGAG 1 cut(s) 1211
BbrPI CACGTG 1 cut(s) 130
Bbv12I GWGCWC 3 cut(s) 845, 1153, 1189
BccI CCATC 5 cut(s) 770, 830, 869, 989, 1270
BceAI ACGGC 2 cut(s) 407, 1086
BciT130I CCWGG 3 cut(s) 315, 419, 806
BciVI GTATCC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 3 cut(s) 330, 861, 1374
BfmI CTRYAG 2 cut(s) 642, 1017
BfoI RGCGCY 1 cut(s) 111
BfuI GTATCC 1 cut(s) 199
BlpI GCTNAGC 1 cut(s) 915
Bme1390I CCNGG 3 cut(s) 315, 419, 806
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 3 cut(s) 258, 995, 1114
BmiI GGNNCC 3 cut(s) 312, 416, 975
BmrFI CCNGG 3 cut(s) 315, 419, 806
BmsI GCATC 4 cut(s) 92, 1091, 1174, 1360
BplI GAGNNNNNCTC 2 cut(s) 876, 908
BpmI CTGGAG 3 cut(s) 297, 401, 903
Bpu1102I GCTNAGC 1 cut(s) 915
Bpu14I TTCGAA 1 cut(s) 1296
Bsa29I ATCGAT 1 cut(s) 607
BsaAI YACGTR 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 1053
BsaJI CCNNGG 1 cut(s) 1365
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 740, 938
Bse1I ACTGG 1 cut(s) 688
Bse8I GATNNNNATC 1 cut(s) 1053
BseBI CCWGG 3 cut(s) 315, 419, 806
BseCI ATCGAT 1 cut(s) 607
BseDI CCNNGG 1 cut(s) 1365
BseGI GGATG 4 cut(s) 1082, 1165, 1281, 1375
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 2 cut(s) 740, 938
BseMII CTCAG 3 cut(s) 360, 603, 906
BseNI ACTGG 1 cut(s) 688
BsePI GCGCGC 1 cut(s) 1331
BseRI GAGGAG 1 cut(s) 761
BseSI GKGCMC 1 cut(s) 1153
BseYI CCCAGC 3 cut(s) 98, 479, 997
BsgI GTGCAG 1 cut(s) 358
Bsh1236I CGCG 3 cut(s) 192, 1191, 1333
BshFI GGCC 4 cut(s) 422, 996, 1076, 1116
BshVI ATCGAT 1 cut(s) 607
BsiHKAI GWGCWC 3 cut(s) 845, 1153, 1189
BslFI GGGAC 2 cut(s) 116, 1319
BslI CCNNNNNNNGG 2 cut(s) 740, 938
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 2 cut(s) 116, 1319
BsnI GGCC 4 cut(s) 422, 996, 1076, 1116
Bsp119I TTCGAA 1 cut(s) 1296
Bsp1286I GDGCHC 4 cut(s) 417, 845, 1153, 1189
Bsp143I GATC 9 cut(s) 12, 220, 317, 521, 634, 973, 1054, 1120, 1131
Bsp1720I GCTNAGC 1 cut(s) 915
BspACI CCGC 7 cut(s) 46, 57, 81, 95, 192, 195, 1240
BspANI GGCC 4 cut(s) 422, 996, 1076, 1116
BspCNI CTCAG 3 cut(s) 361, 602, 907
BspDI ATCGAT 1 cut(s) 607
BspFNI CGCG 3 cut(s) 192, 1191, 1333
BspLI GGNNCC 3 cut(s) 312, 416, 975
BspMAI CTGCAG 2 cut(s) 646, 1021
BspPI GGATC 5 cut(s) 325, 529, 968, 981, 1115
BspT104I TTCGAA 1 cut(s) 1296
BsrI ACTGG 1 cut(s) 688
BssECI CCNNGG 1 cut(s) 1365
BssHII GCGCGC 1 cut(s) 1331
BssMI GATC 9 cut(s) 12, 220, 317, 521, 634, 973, 1054, 1120, 1131
BssSI CACGAG 1 cut(s) 1211
BssT1I CCWWGG 1 cut(s) 1365
Bst2BI CACGAG 1 cut(s) 1211
Bst2UI CCWGG 3 cut(s) 315, 419, 806
Bst4CI ACNGT 4 cut(s) 304, 376, 391, 1323
Bst6I CTCTTC 2 cut(s) 70, 896
BstAPI GCANNNNNTGC 2 cut(s) 671, 1184
BstBAI YACGTR 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 1296
BstC8I GCNNGC 4 cut(s) 361, 853, 1189, 1333
BstDEI CTNAG 3 cut(s) 369, 589, 915
BstF5I GGATG 4 cut(s) 1082, 1165, 1281, 1375
BstFNI CGCG 3 cut(s) 192, 1191, 1333
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 4 cut(s) 110, 1193, 1333, 1335
BstKTI GATC 9 cut(s) 15, 223, 320, 524, 637, 976, 1057, 1123, 1134
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 9 cut(s) 12, 220, 317, 521, 634, 973, 1054, 1120, 1131
BstNI CCWGG 3 cut(s) 315, 419, 806
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 3 cut(s) 313, 417, 804
BstSFI CTRYAG 2 cut(s) 642, 1017
BstSLI GKGCMC 1 cut(s) 1153
BstUI CGCG 3 cut(s) 192, 1191, 1333
BstX2I RGATCY 2 cut(s) 317, 973
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 2 cut(s) 317, 973
Bsu15I ATCGAT 1 cut(s) 607
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 4 cut(s) 422, 996, 1076, 1116
BsuTUI ATCGAT 1 cut(s) 607
BtsCI GGATG 4 cut(s) 1082, 1165, 1281, 1375
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 2 cut(s) 309, 846
Cac8I GCNNGC 4 cut(s) 361, 853, 1189, 1333
CaiI CAGNNNCTG 2 cut(s) 671, 1289
CfoI GCGC 4 cut(s) 110, 1193, 1333, 1335
Cfr13I GGNCC 3 cut(s) 258, 995, 1114
ClaI ATCGAT 1 cut(s) 607
CseI GACGC 1 cut(s) 429
Csp6I GTAC 1 cut(s) 300
CviAII CATG 4 cut(s) 90, 212, 513, 985
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 3 cut(s) 369, 589, 915
DpnI GATC 9 cut(s) 14, 222, 319, 523, 636, 975, 1056, 1122, 1133
DpnII GATC 9 cut(s) 12, 220, 317, 521, 634, 973, 1054, 1120, 1131
DraI TTTAAA 1 cut(s) 694
DraIII CACNNNGTG 1 cut(s) 1175
Eam1104I CTCTTC 2 cut(s) 70, 896
EarI CTCTTC 2 cut(s) 70, 896
EciI GGCGGA 2 cut(s) 35, 46
Eco130I CCWWGG 1 cut(s) 1365
Eco147I AGGCCT 1 cut(s) 1076
Eco24I GRGCYC 1 cut(s) 417
Eco32I GATATC 1 cut(s) 1254
Eco47I GGWCC 1 cut(s) 258
Eco47III AGCGCT 1 cut(s) 109
Eco72I CACGTG 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 313, 417, 804
EcoRV GATATC 1 cut(s) 1254
EcoT14I CCWWGG 1 cut(s) 1365
EcoT38I GRGCYC 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 1365
FaeI CATG 4 cut(s) 93, 215, 516, 988
FaqI GGGAC 2 cut(s) 116, 1319
FatI CATG 4 cut(s) 89, 211, 512, 984
FauNDI CATATG 1 cut(s) 115
FblI GTMKAC 2 cut(s) 729, 1314
FokI GGATG 3 cut(s) 1069, 1152, 1288
FriOI GRGCYC 1 cut(s) 417
FspBI CTAG 3 cut(s) 330, 861, 1374
GlaI GCGC 4 cut(s) 109, 1192, 1332, 1334
GsaI CCCAGC 3 cut(s) 102, 483, 1001
GsuI CTGGAG 3 cut(s) 297, 401, 903
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 4 cut(s) 422, 996, 1076, 1116
HgaI GACGC 1 cut(s) 429
HhaI GCGC 4 cut(s) 110, 1193, 1333, 1335
Hin1II CATG 4 cut(s) 93, 215, 516, 988
Hin6I GCGC 4 cut(s) 108, 1191, 1331, 1333
HinP1I GCGC 4 cut(s) 108, 1191, 1331, 1333
HincII GTYRAC 3 cut(s) 529, 730, 1315
HindII GTYRAC 3 cut(s) 529, 730, 1315
HinfI GANTC 9 cut(s) 62, 169, 488, 582, 650, 781, 934, 1307, 1343
HpaI GTTAAC 1 cut(s) 529
HphI GGTGA 3 cut(s) 160, 577, 755
Hpy166II GTNNAC 6 cut(s) 268, 394, 529, 730, 1151, 1315
Hpy188I TCNGA 5 cut(s) 137, 168, 174, 592, 786
Hpy188III TCNNGA 3 cut(s) 895, 949, 1124
Hpy8I GTNNAC 6 cut(s) 268, 394, 529, 730, 1151, 1315
Hpy99I CGWCG 2 cut(s) 1227, 1319
HpyAV CCTTC 5 cut(s) 235, 512, 578, 619, 655
HpyCH4III ACNGT 4 cut(s) 304, 376, 391, 1323
HpyCH4IV ACGT 1 cut(s) 129
HpyF3I CTNAG 3 cut(s) 369, 589, 915
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 4 cut(s) 93, 215, 516, 988
HspAI GCGC 4 cut(s) 108, 1191, 1331, 1333
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 9 cut(s) 12, 220, 317, 521, 634, 973, 1054, 1120, 1131
LmnI GCTCC 6 cut(s) 316, 420, 476, 628, 840, 884
LweI GCATC 4 cut(s) 92, 1091, 1174, 1360
MaeI CTAG 3 cut(s) 330, 861, 1374
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 757, 1103
MalI GATC 9 cut(s) 14, 222, 319, 523, 636, 975, 1056, 1122, 1133
MboI GATC 9 cut(s) 12, 220, 317, 521, 634, 973, 1054, 1120, 1131
MboII GAAGA 7 cut(s) 57, 60, 63, 215, 553, 563, 913
MflI RGATCY 2 cut(s) 317, 973
MhlI GDGCHC 4 cut(s) 417, 845, 1153, 1189
MluCI AATT 8 cut(s) 279, 381, 471, 562, 689, 702, 762, 1008
MlyI GAGTC 3 cut(s) 56, 163, 1301
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 9 cut(s) 53, 60, 64, 114, 598, 739, 1066, 1139, 1220
MroXI GAANNNNTTC 1 cut(s) 705
MseI TTAA 4 cut(s) 528, 693, 828, 1140
MslI CAYNNNNRTG 3 cut(s) 88, 216, 1274
MspA1I CMGCKG 4 cut(s) 668, 1001, 1016, 1289
MspR9I CCNGG 3 cut(s) 315, 419, 806
MvaI CCWGG 3 cut(s) 315, 419, 806
MvnI CGCG 3 cut(s) 192, 1191, 1333
NdeI CATATG 1 cut(s) 115
NdeII GATC 9 cut(s) 12, 220, 317, 521, 634, 973, 1054, 1120, 1131
NlaIII CATG 4 cut(s) 93, 215, 516, 988
NlaIV GGNNCC 3 cut(s) 312, 416, 975
NspI RCATGY 1 cut(s) 93
NspV TTCGAA 1 cut(s) 1296
PauI GCGCGC 1 cut(s) 1331
PceI AGGCCT 1 cut(s) 1076
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 6 cut(s) 488, 582, 650, 781, 934, 1343
PflFI GACNNNGTC 1 cut(s) 1310
PflMI CCANNNNNTGG 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 313
PleI GAGTC 3 cut(s) 56, 163, 1301
PmaCI CACGTG 1 cut(s) 130
PmlI CACGTG 1 cut(s) 130
PpsI GAGTC 3 cut(s) 56, 163, 1301
Ppu21I YACGTR 1 cut(s) 130
Psp6I CCWGG 3 cut(s) 313, 417, 804
PspCI CACGTG 1 cut(s) 130
PspFI CCCAGC 3 cut(s) 98, 479, 997
PspGI CCWGG 3 cut(s) 313, 417, 804
PspN4I GGNNCC 3 cut(s) 312, 416, 975
PspPI GGNCC 3 cut(s) 258, 995, 1114
PstI CTGCAG 2 cut(s) 646, 1021
PstNI CAGNNNCTG 2 cut(s) 671, 1289
PsuI RGATCY 2 cut(s) 317, 973
PsyI GACNNNGTC 1 cut(s) 1310
PteI GCGCGC 1 cut(s) 1331
PvuII CAGCTG 4 cut(s) 668, 1001, 1016, 1289
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 3 cut(s) 88, 216, 1274
SalI GTCGAC 2 cut(s) 728, 1313
SaqAI TTAA 4 cut(s) 528, 693, 828, 1140
Sau3AI GATC 9 cut(s) 12, 220, 317, 521, 634, 973, 1054, 1120, 1131
Sau96I GGNCC 3 cut(s) 258, 995, 1114
SchI GAGTC 3 cut(s) 56, 163, 1301
ScrFI CCNGG 3 cut(s) 315, 419, 806
SduI GDGCHC 4 cut(s) 417, 845, 1153, 1189
SfaNI GCATC 4 cut(s) 92, 1091, 1174, 1360
SfcI CTRYAG 2 cut(s) 642, 1017
SfuI TTCGAA 1 cut(s) 1296
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 3 cut(s) 88, 216, 1274
Sse9I AATT 8 cut(s) 279, 381, 471, 562, 689, 702, 762, 1008
SseBI AGGCCT 1 cut(s) 1076
SsiI CCGC 7 cut(s) 46, 57, 81, 95, 192, 195, 1240
SspMI CTAG 3 cut(s) 330, 861, 1374
StuI AGGCCT 1 cut(s) 1076
StyD4I CCNGG 3 cut(s) 313, 417, 804
StyI CCWWGG 1 cut(s) 1365
TaaI ACNGT 4 cut(s) 304, 376, 391, 1323
TaiI ACGT 1 cut(s) 132
TaqI TCGA 5 cut(s) 36, 607, 729, 1296, 1314
TasI AATT 8 cut(s) 279, 381, 471, 562, 689, 702, 762, 1008
TauI GCSGC 4 cut(s) 98, 195, 198, 1242
TfiI GAWTC 6 cut(s) 488, 582, 650, 781, 934, 1343
Tru1I TTAA 4 cut(s) 528, 693, 828, 1140
Tru9I TTAA 4 cut(s) 528, 693, 828, 1140
TscAI CASTG 2 cut(s) 309, 853
TspDTI ATGAA 4 cut(s) 396, 914, 1232, 1343
TspGWI ACGGA 2 cut(s) 637, 1332
TspRI CASTG 2 cut(s) 309, 853
Tth111I GACNNNGTC 1 cut(s) 1310
Van91I CCANNNNNTGG 1 cut(s) 740
VneI GTGCAC 1 cut(s) 1149
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 689
XceI RCATGY 1 cut(s) 93
XmiI GTMKAC 2 cut(s) 729, 1314
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 3 cut(s) 330, 861, 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.