Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001874

Physical Location & Seq

Genomic Coordinates Forward (+)

15323947 .. 15326141

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG178800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGACATTGGTAAAGATCTTTAAACAAACCCATAATTGCCTTCTTCCTATCGGGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGATCAGGCTACAGTGCTAGAGTCGAGGGAGGCTGAGGATGGGATTGATGAGAATGATTCAGTAGCTATGATGAGGACTATTGAGGAAGCCTTGGAAGCACAGAAAAATTGCAAAAACCATCATTTGAGATATCTGGAAAACTTGCTGCTGAAACCAATAGATTCAGGGGAAGAAGCTGACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

96

Amino Acids

10.9

Weight (kDa)

4.73

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04710 AT2G33150
fragaria_vesca	FvH4_4g00310
malus_domestica	MD04G1003800.v1.1
prunus_persica	Prupe.1G003300_v2.0.a1 Prupe.1G003300_v2.0.a1
pyrus_communis	pycom04g00390
rosa_chinensis	RchiOBHm_Chr4g0385141 RchiOBHm_Chr4g0415491 RchiOBHm_Chr6g0275511
rosa_laevigata	RLG00000005750 RLG00000010254
rosa_multiflora	Rmu_sc0003086.1_g000005 Rmu_sc0008734.1_g000018 Rmu_sc0010556.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010730 Rroxscaffold_1G00018720 Rroxscaffold_1G00054220 Rroxscaffold_3G00240070 Rroxscaffold_5G00333060 Rroxscaffold_5G00355890 Rroxscaffold_6G00390920
rosa_rugosa	Rorug03G0299900
rosa_samantha	Rh1BG085600 Rh2BG386800 Rh2BG500100 Rh2DG511300 Rh4AG003100 Rh4BG002500 Rh4BG187100 Rh4CG003300 Rh4DG002800 Rh5AG250800 Rh5AG295600 Rh5AG385400 Rh5AG466200 Rh5BG246000 Rh5DG254500 Rh6DG201600 Rh7CG178800 Rh7CG381300 Rh7DG359400
rosa_wichuraiana	Rw3G018530 Rw4G000620 Rw7G039000 Rw7G041060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	93
AluBI	AGCT	2 cut(s)	170, 281
AluI	AGCT	2 cut(s)	170, 281
ApeKI	GCWGC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	49
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	2 cut(s)	137, 231
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	114
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	75, 129
BseXI	GCAGC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	15, 106
BspCNI	CTCAG	2 cut(s)	74, 130
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	15, 106
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	88, 118
BstDEI	CTNAG	2 cut(s)	61, 138
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	2 cut(s)	18, 109
BstMBI	GATC	2 cut(s)	15, 106
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	123
CviJI	RGCY	5 cut(s)	113, 137, 170, 194, 281
CviKI_1	RGCY	5 cut(s)	113, 137, 170, 194, 281
DdeI	CTNAG	2 cut(s)	61, 138
DpnI	GATC	2 cut(s)	17, 108
DpnII	GATC	2 cut(s)	15, 106
DraI	TTTAAA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	195
Eco32I	GATATC	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaiI	YATR	2 cut(s)	33, 173
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	251
HinfI	GANTC	3 cut(s)	125, 161, 266
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	88, 118
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	61, 138
Kzo9I	GATC	2 cut(s)	15, 106
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	4 cut(s)	83, 95, 224, 255
Lsp1109I	GCAGC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	17, 108
MboI	GATC	2 cut(s)	15, 106
MboII	GAAGA	2 cut(s)	35, 287
MflI	RGATCY	1 cut(s)	15
MluCI	AATT	2 cut(s)	34, 211
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	70, 123, 127, 133, 171, 181
MseI	TTAA	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	2 cut(s)	15, 106
NmuCI	GTSAC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	161, 266
PkrI	GCNGC	1 cut(s)	252
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	2 cut(s)	15, 106
SchI	GAGTC	1 cut(s)	134
SetI	ASST	3 cut(s)	62, 172, 283
SfcI	CTRYAG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	34, 211
SspMI	CTAG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	88, 118
TaqI	TCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	34, 211
TfiI	GAWTC	2 cut(s)	161, 266
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	55
TspRI	CASTG	1 cut(s)	123
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.