Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001874

Physical Location & Seq

Genomic Coordinates Forward (+)

29895834 .. 29902701

Gene Structure 6868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG246000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGACATTGGTAAAGATCTTTAAACAAACCCAAAATTGCCTTCTTCCTATGGGGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGAACAGGCTGCAGTTGACTCTCATAGAAAGGCAGTTGTTGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGTCAACCAAGGTGCTAGAGTCGAGGGAGGCTGAGGATGGGATTGATGAGAATGATTCAGTAGCTATGATGAGGACTGCTGAGGAAGCCTTGGAAGCACAGAAAAATTGCAAAAACCTTCATTTGAGATATCTGGAAAACTTGCTGTTGAAACCAATAGATTCAGGGGTAAGTCCTAATTTCTTTGTTTTTGAAACAAAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

129

Amino Acids

14.42

Weight (kDa)

5.38

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	15 - 86	1.3e-16	Thiolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04710 AT2G33150
fragaria_vesca	FvH4_4g00310
malus_domestica	MD04G1003800.v1.1
prunus_persica	Prupe.1G003300_v2.0.a1 Prupe.1G003300_v2.0.a1
pyrus_communis	pycom04g00390
rosa_chinensis	RchiOBHm_Chr4g0385141 RchiOBHm_Chr4g0415491 RchiOBHm_Chr6g0275511
rosa_laevigata	RLG00000005750 RLG00000010254
rosa_multiflora	Rmu_sc0003086.1_g000005 Rmu_sc0008734.1_g000018 Rmu_sc0010556.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010730 Rroxscaffold_1G00018720 Rroxscaffold_1G00054220 Rroxscaffold_3G00240070 Rroxscaffold_5G00333060 Rroxscaffold_5G00355890 Rroxscaffold_6G00390920
rosa_rugosa	Rorug03G0299900
rosa_samantha	Rh1BG085600 Rh2BG386800 Rh2BG500100 Rh2DG511300 Rh4AG003100 Rh4BG002500 Rh4BG187100 Rh4CG003300 Rh4DG002800 Rh5AG250800 Rh5AG295600 Rh5AG385400 Rh5AG466200 Rh5BG246000 Rh5DG254500 Rh6DG201600 Rh7CG178800 Rh7CG381300 Rh7DG359400
rosa_wichuraiana	Rw3G018530 Rw4G000620 Rw7G039000 Rw7G041060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	93, 334, 377
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	113, 152
AsuHPI	GGTGA	1 cut(s)	49
BbvCI	CCTCAGC	2 cut(s)	216, 264
BbvI	GCAGC	2 cut(s)	100, 139
BccI	CCATC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	114
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	2 cut(s)	114, 153
BlsI	GCNGC	2 cut(s)	115, 154
Bpu10I	CCTNAGC	2 cut(s)	216, 264
BsaJI	CCNNGG	2 cut(s)	192, 273
BseDI	CCNNGG	2 cut(s)	192, 273
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	75, 207, 255
BseXI	GCAGC	2 cut(s)	100, 139
Bsp143I	GATC	1 cut(s)	15
BspCNI	CTCAG	3 cut(s)	74, 208, 256
BspMAI	CTGCAG	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	192, 273
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	192, 273
Bst4CI	ACNGT	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	61, 216, 264
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 152, 269, 278
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	100, 139
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	226
CviJI	RGCY	4 cut(s)	113, 215, 248, 272
CviKI_1	RGCY	4 cut(s)	113, 215, 248, 272
DdeI	CTNAG	3 cut(s)	61, 216, 264
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
DraI	TTTAAA	2 cut(s)	22, 166
Eco130I	CCWWGG	2 cut(s)	192, 273
Eco32I	GATATC	1 cut(s)	314
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	192, 273
ErhI	CCWWGG	2 cut(s)	192, 273
FaiI	YATR	3 cut(s)	50, 129, 251
Fnu4HI	GCNGC	2 cut(s)	114, 153
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	114, 153
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	2 cut(s)	114, 153
HincII	GTYRAC	2 cut(s)	121, 189
HindII	GTYRAC	2 cut(s)	121, 189
HinfI	GANTC	4 cut(s)	122, 203, 239, 344
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	121, 189
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	2 cut(s)	121, 189
HpyAV	CCTTC	2 cut(s)	50, 311
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	116, 294
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 152, 269, 278
HpyF3I	CTNAG	3 cut(s)	61, 216, 264
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	6 cut(s)	83, 95, 141, 195, 302, 333
Lsp1109I	GCAGC	2 cut(s)	100, 139
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	15
MluCI	AATT	4 cut(s)	34, 174, 289, 361
MlyI	GAGTC	2 cut(s)	116, 212
MnlI	CCTC	6 cut(s)	70, 201, 205, 211, 249, 259
MseI	TTAA	3 cut(s)	21, 165, 388
MwoI	GCNNNNNNNGC	4 cut(s)	143, 152, 269, 278
NdeII	GATC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	239, 344
PkrI	GCNGC	2 cut(s)	115, 154
PleI	GAGTC	2 cut(s)	116, 211
PpsI	GAGTC	2 cut(s)	116, 211
PspEI	GGTNACC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	21, 165, 388
SatI	GCNGC	2 cut(s)	114, 153
Sau3AI	GATC	1 cut(s)	15
SchI	GAGTC	2 cut(s)	116, 212
SetI	ASST	4 cut(s)	62, 198, 250, 303
SfcI	CTRYAG	1 cut(s)	114
Sse9I	AATT	4 cut(s)	34, 174, 289, 361
SspMI	CTAG	1 cut(s)	200
StyI	CCWWGG	2 cut(s)	192, 273
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	206
TasI	AATT	4 cut(s)	34, 174, 289, 361
TfiI	GAWTC	2 cut(s)	239, 344
Tru1I	TTAA	3 cut(s)	21, 165, 388
Tru9I	TTAA	3 cut(s)	21, 165, 388
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	113, 152
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	186, 293
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.