Rw3G018530

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001874
Physical Location & Seq
Reverse (-)
20739949 .. 20742332
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018530.1

Sequence Viewer

Length: 450 bp
ATGAATTTGCATTCTGTTCAGGTTGACTCTCATAGAAAGGCAGTTGTTGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGTCAACCAAGGTAACTATTTTCCAGGTGCTAGAGTCGAGGGAGGCTGAGGATGGGCCTGGATATGTCTTTGACAAGTTGTTGGTTGTTTGCTTGAGTAGGATTGATGAGAATGATTCAGTAGCTATGATGAGGACTGCTGAGGAAGCCTTGGAAGCACAGAAAAATTGGAAGAAGCTGACTTTTAGAGCAACTTTGATGCCAAGCTTTTATCAGGAGCCTCCACCTCCTAAGATGGTGCTAAAGAAGATGAGGATGAGCATGGAGAGACACTATGTGGGTCTTGTGGAGAGAACTATGCATCTGATGAATTTTGGATTTGCTGCGATGTCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

149

Amino Acids

16.86

Weight (kDa)

9.1

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 4, 397
AdeI CACNNNGTG 1 cut(s) 364
AjnI CCWGG 2 cut(s) 111, 145
AluBI AGCT 3 cut(s) 212, 265, 294
AluI AGCT 3 cut(s) 212, 265, 294
Alw26I GTCTC 1 cut(s) 349
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 56, 410
ApoI RAATTY 2 cut(s) 4, 397
Asp700I GAANNNNTTC 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 143
BbvCI CCTCAGC 2 cut(s) 135, 228
BbvI GCAGC 2 cut(s) 43, 397
BccI CCATC 2 cut(s) 134, 316
BciT130I CCWGG 2 cut(s) 113, 147
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 1 cut(s) 119
BisI GCNGC 2 cut(s) 57, 411
BlsI GCNGC 2 cut(s) 58, 412
Bme1390I CCNGG 2 cut(s) 113, 147
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 306, 433
BmrFI CCNGG 2 cut(s) 113, 147
BmsI GCATC 2 cut(s) 276, 397
Bpu10I CCTNAGC 2 cut(s) 135, 228
BpuEI CTTGAG 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 96, 237, 435
BseBI CCWGG 2 cut(s) 113, 147
BseDI CCNNGG 3 cut(s) 96, 237, 435
BseGI GGATG 2 cut(s) 145, 348
BseMII CTCAG 2 cut(s) 126, 219
BseXI GCAGC 2 cut(s) 43, 397
BshFI GGCC 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 435
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 127, 220
BspLI GGNNCC 2 cut(s) 306, 433
BssECI CCNNGG 3 cut(s) 96, 237, 435
BssT1I CCWWGG 3 cut(s) 96, 237, 435
Bst2UI CCWGG 2 cut(s) 113, 147
BstAPI GCANNNNNTGC 1 cut(s) 47
BstDEI CTNAG 3 cut(s) 135, 228, 318
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 2 cut(s) 145, 348
BstMAI GTCTC 1 cut(s) 349
BstMWI GCNNNNNNNGC 4 cut(s) 47, 56, 233, 242
BstNI CCWGG 2 cut(s) 113, 147
BstSCI CCNGG 2 cut(s) 111, 145
BstV1I GCAGC 2 cut(s) 43, 397
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 435
BtgZI GCGATG 1 cut(s) 428
BtsCI GGATG 2 cut(s) 145, 348
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 2 cut(s) 349, 436
CviJI RGCY 7 cut(s) 134, 145, 212, 236, 265, 294, 307
CviKI_1 RGCY 7 cut(s) 134, 145, 212, 236, 265, 294, 307
DdeI CTNAG 3 cut(s) 135, 228, 318
DraI TTTAAA 1 cut(s) 70
DraIII CACNNNGTG 1 cut(s) 364
Eco130I CCWWGG 3 cut(s) 96, 237, 435
EcoRII CCWGG 2 cut(s) 111, 145
EcoT14I CCWWGG 3 cut(s) 96, 237, 435
EcoT22I ATGCAT 1 cut(s) 390
ErhI CCWWGG 3 cut(s) 96, 237, 435
FaeI CATG 2 cut(s) 352, 439
FaiI YATR 7 cut(s) 33, 153, 215, 350, 363, 386, 437
FatI CATG 2 cut(s) 348, 435
Fnu4HI GCNGC 2 cut(s) 57, 411
FokI GGATG 2 cut(s) 152, 355
Fsp4HI GCNGC 2 cut(s) 57, 411
FspBI CTAG 1 cut(s) 119
GluI GCNGC 2 cut(s) 57, 411
HaeIII GGCC 1 cut(s) 145
Hin1II CATG 2 cut(s) 352, 439
HincII GTYRAC 2 cut(s) 25, 93
HindII GTYRAC 2 cut(s) 25, 93
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 3 cut(s) 26, 122, 203
Hpy166II GTNNAC 2 cut(s) 25, 93
Hpy188I TCNGA 1 cut(s) 393
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 2 cut(s) 25, 93
HpyCH4V TGCA 2 cut(s) 10, 388
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 56, 233, 242
HpyF3I CTNAG 3 cut(s) 135, 228, 318
Hsp92II CATG 2 cut(s) 352, 439
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 8 cut(s) 5, 45, 98, 99, 125, 132, 159, 287
Lsp1109I GCAGC 2 cut(s) 43, 397
LweI GCATC 2 cut(s) 276, 397
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 100
MboII GAAGA 2 cut(s) 271, 346
MluCI AATT 4 cut(s) 4, 78, 253, 397
MlyI GAGTC 2 cut(s) 20, 131
MnlI CCTC 8 cut(s) 120, 124, 130, 213, 223, 318, 324, 333
Mph1103I ATGCAT 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 430
MseI TTAA 1 cut(s) 69
MspR9I CCNGG 2 cut(s) 113, 147
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 2 cut(s) 113, 147
MwoI GCNNNNNNNGC 4 cut(s) 47, 56, 233, 242
NcoI CCATGG 1 cut(s) 435
NlaIII CATG 2 cut(s) 352, 439
NlaIV GGNNCC 2 cut(s) 306, 433
NsiI ATGCAT 1 cut(s) 390
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 58, 412
PleI GAGTC 2 cut(s) 20, 130
PpsI GAGTC 2 cut(s) 20, 130
Psp6I CCWGG 2 cut(s) 111, 145
PspGI CCWGG 2 cut(s) 111, 145
PspN4I GGNNCC 2 cut(s) 306, 433
PspPI GGNCC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 57, 411
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 2 cut(s) 20, 131
ScrFI CCNGG 2 cut(s) 113, 147
SetI ASST 7 cut(s) 24, 102, 117, 214, 267, 296, 316
SfaNI GCATC 2 cut(s) 276, 397
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 4 cut(s) 4, 78, 253, 397
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 111, 145
StyI CCWWGG 3 cut(s) 96, 237, 435
TaqI TCGA 1 cut(s) 125
TasI AATT 4 cut(s) 4, 78, 253, 397
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseI GCWGC 2 cut(s) 56, 410
TspDTI ATGAA 3 cut(s) 17, 90, 410
XapI RAATTY 2 cut(s) 4, 397
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.