Rh2BG500100

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001874
Physical Location & Seq
Forward (+)
70653604 .. 70669666
16063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG500100.1

Sequence Viewer

Length: 342 bp
ATGACATTGGTAAAGATCTTTAAACAAACCCATAATTGCCTTCTTCCTATGGGGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGATAAGGCTGCAGTTGACTCTCATAGAAAGGCATTTGTTGTTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGCAAAAACCATCATTTGAGATATCTGGAAAACTTGCTGCTGAAACCATTAGATTCAGGGGATGCATGGTAATCAAACATCCATACCAAATGATTAAGGCCTCACCAACCTATCTATCCAAATTGCATGTAGTATGCAGTACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

113

Amino Acids

12.56

Weight (kDa)

9.61

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 15 - 68 2.2e-15 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 334
AgsI TTSAA 1 cut(s) 93
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 3 cut(s) 113, 152, 230
AsuHPI GGTGA 2 cut(s) 49, 288
BbvI GCAGC 3 cut(s) 100, 139, 217
BccI CCATC 1 cut(s) 211
BfmI CTRYAG 1 cut(s) 114
BglII AGATCT 1 cut(s) 15
BisI GCNGC 3 cut(s) 114, 153, 231
BlsI GCNGC 3 cut(s) 115, 154, 232
BmcAI AGTACT 1 cut(s) 334
BmsI GCATC 1 cut(s) 245
BseGI GGATG 2 cut(s) 260, 271
BseMII CTCAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 100, 139, 217
BshFI GGCC 1 cut(s) 293
BsnI GGCC 1 cut(s) 293
Bsp143I GATC 1 cut(s) 15
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 74
BspMAI CTGCAG 1 cut(s) 118
BssMI GATC 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 61
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 2 cut(s) 260, 271
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 323
BstPI GGTNACC 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 100, 139, 217
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 1 cut(s) 293
BtsCI GGATG 2 cut(s) 260, 271
Csp6I GTAC 1 cut(s) 333
CviAII CATG 3 cut(s) 259, 320, 339
CviJI RGCY 2 cut(s) 113, 293
CviKI_1 RGCY 2 cut(s) 113, 293
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 61
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DraI TTTAAA 2 cut(s) 22, 166
Eco147I AGGCCT 1 cut(s) 293
Eco32I GATATC 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoRV GATATC 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 260
FaeI CATG 3 cut(s) 262, 323, 342
FaiI YATR 8 cut(s) 33, 50, 129, 260, 277, 321, 328, 340
FatI CATG 3 cut(s) 258, 319, 338
Fnu4HI GCNGC 3 cut(s) 114, 153, 231
FokI GGATG 2 cut(s) 258, 267
Fsp4HI GCNGC 3 cut(s) 114, 153, 231
GluI GCNGC 3 cut(s) 114, 153, 231
HaeIII GGCC 1 cut(s) 293
Hin1II CATG 3 cut(s) 262, 323, 342
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 2 cut(s) 122, 246
HphI GGTGA 2 cut(s) 49, 288
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 5 cut(s) 116, 258, 319, 330, 338
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 3 cut(s) 262, 323, 342
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 83, 141, 195, 204, 235
Lsp1109I GCAGC 3 cut(s) 100, 139, 217
LweI GCATC 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 55, 145
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 1 cut(s) 35
MflI RGATCY 1 cut(s) 15
MluCI AATT 3 cut(s) 34, 174, 314
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 2 cut(s) 70, 304
Mph1103I ATGCAT 1 cut(s) 260
MseI TTAA 3 cut(s) 21, 165, 288
NdeII GATC 1 cut(s) 15
NlaIII CATG 3 cut(s) 262, 323, 342
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 260
NspI RCATGY 1 cut(s) 323
PceI AGGCCT 1 cut(s) 293
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 3 cut(s) 115, 154, 232
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 15
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SaqAI TTAA 3 cut(s) 21, 165, 288
SatI GCNGC 3 cut(s) 114, 153, 231
Sau3AI GATC 1 cut(s) 15
ScaI AGTACT 1 cut(s) 334
SchI GAGTC 1 cut(s) 116
SetI ASST 2 cut(s) 62, 305
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 114
Sse9I AATT 3 cut(s) 34, 174, 314
SseBI AGGCCT 1 cut(s) 293
StuI AGGCCT 1 cut(s) 293
TaaI ACNGT 1 cut(s) 88
TasI AATT 3 cut(s) 34, 174, 314
TatI WGTACW 1 cut(s) 332
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 3 cut(s) 21, 165, 288
Tru9I TTAA 3 cut(s) 21, 165, 288
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 113, 152, 230
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 186
XceI RCATGY 1 cut(s) 323
ZrmI AGTACT 1 cut(s) 334
Zsp2I ATGCAT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.