Rh5AG466200

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001874
Physical Location & Seq
Reverse (-)
80042941 .. 80048763
5823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG466200.1

Sequence Viewer

Length: 351 bp
ATGGAAGGTGGTGGTTGGGTTGAGAATGGCGGGACGATAGCTGAATCCGTGGGTTGGATTAAGATCGTGGAAATTCTTCTATGGAAAAGTGGAAAACCCAGGTTCTGGAGGTTGAAGAAGAACCAGTTTGATACTGGTTTCTTAATATTGGTTGACTCTCATAGAAAGGCAGTTGCTGCTACTACTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGGTTGTTGATCCAAAATCTGGTGATGATGGGATTCGAAATACAACATTGTCAGACCTAGCAAAGCTGAAGCCTCTGTTTAAGAAAGATGGGACCACACATTGTCAAATTTCATCAATTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

116

Amino Acids

12.79

Weight (kDa)

9.52

Isoelectric Point (pI)

10.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 51 - 110 8.6e-14 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 105, 245
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 2 cut(s) 72, 333
AcuI CTGAAG 1 cut(s) 314
AfiI CCNNNNNNNGG 3 cut(s) 54, 105, 245
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 1 cut(s) 98
AluBI AGCT 2 cut(s) 41, 292
AluI AGCT 2 cut(s) 41, 292
AlwI GGATC 1 cut(s) 230
AlwNI CAGNNNCTG 2 cut(s) 105, 176
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 2 cut(s) 72, 333
Asp700I GAANNNNTTC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 260
AsuII TTCGAA 1 cut(s) 262
AvaII GGWCC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 163
BccI CCATC 2 cut(s) 248, 308
BciT130I CCWGG 1 cut(s) 100
BfaI CTAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 62
BsaJI CCNNGG 3 cut(s) 48, 98, 225
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 105, 245
Bse1I ACTGG 2 cut(s) 124, 139
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 3 cut(s) 48, 98, 225
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 3 cut(s) 54, 105, 245
BseNI ACTGG 2 cut(s) 124, 139
BseXI GCAGC 1 cut(s) 163
BslFI GGGAC 2 cut(s) 46, 331
BslI CCNNNNNNNGG 3 cut(s) 54, 105, 245
BsmFI GGGAC 2 cut(s) 46, 331
Bsp119I TTCGAA 1 cut(s) 262
Bsp143I GATC 2 cut(s) 63, 235
BspACI CCGC 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 319
BspPI GGATC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 262
BsrI ACTGG 2 cut(s) 124, 139
BssECI CCNNGG 3 cut(s) 48, 98, 225
BssMI GATC 2 cut(s) 63, 235
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 100
BstAPI GCANNNNNTGC 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 262
BstDSI CCRYGG 1 cut(s) 48
BstKTI GATC 2 cut(s) 66, 238
BstMBI GATC 2 cut(s) 63, 235
BstMWI GCNNNNNNNGC 2 cut(s) 176, 185
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 48
CaiI CAGNNNCTG 2 cut(s) 105, 176
Cfr13I GGNCC 1 cut(s) 318
CviJI RGCY 3 cut(s) 41, 292, 298
CviKI_1 RGCY 3 cut(s) 41, 292, 298
DpnI GATC 2 cut(s) 65, 237
DpnII GATC 2 cut(s) 63, 235
DraI TTTAAA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaiI YATR 2 cut(s) 82, 162
FaqI GGGAC 2 cut(s) 46, 331
FauI CCCGC 1 cut(s) 23
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 127
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 3 cut(s) 44, 155, 259
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 185
Kzo9I GATC 2 cut(s) 63, 235
LpnPI CCDG 8 cut(s) 85, 91, 112, 120, 137, 174, 228, 231
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 1 cut(s) 284
MalI GATC 2 cut(s) 65, 237
MboI GATC 2 cut(s) 63, 235
MboII GAAGA 3 cut(s) 68, 127, 130
MluCI AATT 4 cut(s) 72, 207, 333, 342
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 2 cut(s) 102, 309
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 4 cut(s) 60, 143, 198, 306
MspR9I CCNGG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 176, 185
NdeII GATC 2 cut(s) 63, 235
NlaIV GGNNCC 1 cut(s) 319
NspV TTCGAA 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 44, 259
PflMI CCANNNNNTGG 2 cut(s) 105, 245
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 318
PstNI CAGNNNCTG 2 cut(s) 105, 176
SaqAI TTAA 4 cut(s) 60, 143, 198, 306
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 63, 235
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 100
SetI ASST 7 cut(s) 10, 43, 104, 113, 231, 285, 294
SfuI TTCGAA 1 cut(s) 262
SinI GGWCC 1 cut(s) 318
Sse9I AATT 4 cut(s) 72, 207, 333, 342
SsiI CCGC 1 cut(s) 30
SspI AATATT 1 cut(s) 147
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 1 cut(s) 225
TaqI TCGA 1 cut(s) 262
TasI AATT 4 cut(s) 72, 207, 333, 342
TfiI GAWTC 2 cut(s) 44, 259
Tru1I TTAA 4 cut(s) 60, 143, 198, 306
Tru9I TTAA 4 cut(s) 60, 143, 198, 306
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 219, 327
TspGWI ACGGA 1 cut(s) 37
Van91I CCANNNNNTGG 2 cut(s) 105, 245
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 2 cut(s) 72, 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.