Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001874

Physical Location & Seq

Genomic Coordinates Reverse (-)

31593481 .. 31596967

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGTAGTTGTTGTTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGGTAACTATTTTCCAGGTGCTAGAGTCGAGGGAGGCTGAGGATGGGATTGATGAGAATGATTCAGTAGCTATGATGAGGACTACTGAGGAAGCCTTGGAAAGCACAGAAAAATTGCAAAAACCATCATTTGAGATATCTGGAAAACTTGCTGCTCAAACCAATAGATTCAGGGGAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

109

Amino Acids

12.1

Weight (kDa)

5.19

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	1 - 81	4.8e-13	Thiolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04710 AT2G33150
fragaria_vesca	FvH4_4g00310
malus_domestica	MD04G1003800.v1.1
prunus_persica	Prupe.1G003300_v2.0.a1 Prupe.1G003300_v2.0.a1
pyrus_communis	pycom04g00390
rosa_chinensis	RchiOBHm_Chr4g0385141 RchiOBHm_Chr4g0415491 RchiOBHm_Chr6g0275511
rosa_laevigata	RLG00000005750 RLG00000010254
rosa_multiflora	Rmu_sc0003086.1_g000005 Rmu_sc0008734.1_g000018 Rmu_sc0010556.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010730 Rroxscaffold_1G00018720 Rroxscaffold_1G00054220 Rroxscaffold_3G00240070 Rroxscaffold_5G00333060 Rroxscaffold_5G00355890 Rroxscaffold_6G00390920
rosa_rugosa	Rorug03G0299900
rosa_samantha	Rh1BG085600 Rh2BG386800 Rh2BG500100 Rh2DG511300 Rh4AG003100 Rh4BG002500 Rh4BG187100 Rh4CG003300 Rh4DG002800 Rh5AG250800 Rh5AG295600 Rh5AG385400 Rh5AG466200 Rh5BG246000 Rh5DG254500 Rh6DG201600 Rh7CG178800 Rh7CG381300 Rh7DG359400
rosa_wichuraiana	Rw3G018530 Rw4G000620 Rw7G039000 Rw7G041060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	215, 327
AluI	AGCT	2 cut(s)	215, 327
ApeKI	GCWGC	3 cut(s)	65, 104, 296
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	52, 91, 283
BccI	CCATC	2 cut(s)	182, 277
BciT130I	CCWGG	1 cut(s)	161
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	3 cut(s)	66, 105, 297
BlsI	GCNGC	3 cut(s)	67, 106, 298
Bme1390I	CCNGG	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	144, 240
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	144, 240
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	3 cut(s)	27, 174, 222
BseXI	GCAGC	3 cut(s)	52, 91, 283
Bsp143I	GATC	1 cut(s)	58
BspCNI	CTCAG	3 cut(s)	26, 175, 223
BspMAI	CTGCAG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	144, 240
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	144, 240
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	13, 183, 231
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	161
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	52, 91, 283
BtsCI	GGATG	1 cut(s)	193
CviJI	RGCY	5 cut(s)	65, 182, 215, 239, 327
CviKI_1	RGCY	5 cut(s)	65, 182, 215, 239, 327
DdeI	CTNAG	3 cut(s)	13, 183, 231
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
DraI	TTTAAA	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	144, 240
Eco32I	GATATC	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	282
EcoT14I	CCWWGG	2 cut(s)	144, 240
ErhI	CCWWGG	2 cut(s)	144, 240
FaiI	YATR	2 cut(s)	81, 218
Fnu4HI	GCNGC	3 cut(s)	66, 105, 297
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	3 cut(s)	66, 105, 297
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	3 cut(s)	66, 105, 297
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	74, 170, 206, 312
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	68, 262
HpyF3I	CTNAG	3 cut(s)	13, 183, 231
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	8 cut(s)	35, 47, 93, 146, 147, 173, 270, 301
Lsp1109I	GCAGC	3 cut(s)	52, 91, 283
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	3 cut(s)	7, 97, 148
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MluCI	AATT	2 cut(s)	126, 257
MlyI	GAGTC	2 cut(s)	68, 179
MnlI	CCTC	6 cut(s)	22, 168, 172, 178, 216, 226
MseI	TTAA	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	206, 312
PkrI	GCNGC	3 cut(s)	67, 106, 298
PleI	GAGTC	2 cut(s)	68, 178
PpsI	GAGTC	2 cut(s)	68, 178
Psp6I	CCWGG	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	3 cut(s)	66, 105, 297
Sau3AI	GATC	1 cut(s)	58
SchI	GAGTC	2 cut(s)	68, 179
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	6 cut(s)	14, 90, 150, 165, 217, 329
SfcI	CTRYAG	1 cut(s)	66
Sse9I	AATT	2 cut(s)	126, 257
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	2 cut(s)	144, 240
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	173
TasI	AATT	2 cut(s)	126, 257
TfiI	GAWTC	2 cut(s)	206, 312
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	3 cut(s)	65, 104, 296
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	138
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.