Rorug03G0299900

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
31360396 .. 31361694
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0299900.1

Sequence Viewer

Length: 1299 bp
ATGGCTGAAGCATGCACCCATCCACTGGTAAAAATCACCTCGAGGGAGATGATTAAACCCTCATCTCCAACTCCTCATCACCAAAGAAATCTCCAGCTCTCTTTTCTGGACCAACTGCTGCCTCCTACTTTATACCCATCTATCATATTTTTCTACTCTTCCCCTACTAGTGATCCCGCTTCCACTGTTTCAGAGAGCTTGCAAGCATCTCTCTCCAAAGCTTTGGTTCTCTTCTATCCACTCGCTGGCCGACTAAAAACCGCTGCCTCCGTCGACTGCAACGACGAAGGAGCCCATTTTCTTGAGGCCCAAGTTAACTGCCAGCTCTCGGATTTACTTAAAGTTCCTGAGCACAAGTTGCTTAACAACCTTATCCCCGAGTTTGAGCCTAAAACAGTTCAGTTGGCCTTGGGTTCAGTTGTGTTGGTTGTTCAAGTGAGTCTTTTCAACTGTGGAGGAATAGCTGTTGCTGCTTCCCCAATACACAAGATCGGAGATGCCGGCGCATATTACAAATTTATACAAACATGGGCAGCCATACATCGTGGTGAATCCGATCAACTAGTGCTACCGGAGTTTAATGGAGCATCTGTGCTGCCTTCTAGAGAATTGTCACTCCCAAACAACTTGGGATTAATCCCAAATCAAAAGTTGACAACAAGGAGGTTCGTGTTTGATGTCACAAAGATTGGAAGTCTCCAGGCCAAAATCGGAGGTACACATGTAGAACTTGTTTCGGCAATCATCCTCAGAAGTGCTCTTGCTGCTTCTCATAAATCGAAGCCGGAGACTACTTCAAGCACAACTGTGTTGTTCCAAATAGTAAGTTTCCGCAACATAATAGTCCCCGCGGTAGCACCAAATGTCATGGGTAATTGGTTTTGGTCGGTTCAAGTGGTATTCAAACAAAACGAGACAGAACTGCAGGAGTTGGTTGCTAAAATGAGGAAAGGAGTAACAGACTTCTACAAGGAGAAGGCGGACAGATTCAAAGGCGAAGATGGATTCCGGGTGGTGTCGGAGTCACTTAGAGAGAGTCGTGAGTTCTTTAAGAGCACAAAGGGGTGCATCAATCTTTATAGGGGTACAAGTTTGTGCAAGCTCCCCGTATATGAAATTGATTTTGGTTGGGGGAAACCAACTTGGGTCACTAGCCAAAGCAACTACAAGAATCTATTTCTCCTTATCGACACAAAACATGGAGATGGCATCGAAGTGTGGGTGACACTGGATGAAAAAGAAATGGCTATATTTGAGAGTGAAGAGGACCTCCTTTCATTTGCTTGTGCAAACCAATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

432

Amino Acids

47.88

Weight (kDa)

6.57

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 10 - 423 2.1e-74 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 40
AccB7I CCANNNNNTGG 2 cut(s) 25, 245
AccI GTMKAC 1 cut(s) 273
AccII CGCG 1 cut(s) 851
AciI CCGC 6 cut(s) 177, 261, 832, 849, 851, 980
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 2 cut(s) 718, 1087
AfiI CCNNNNNNNGG 3 cut(s) 25, 245, 328
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 6 cut(s) 434, 448, 798, 893, 904, 991
AhlI ACTAGT 2 cut(s) 167, 562
AjnI CCWGG 1 cut(s) 699
AjuI GAANNNNNNNTTGG 2 cut(s) 1107, 1139
AleI CACNNNNGTG 1 cut(s) 806
AluBI AGCT 6 cut(s) 97, 198, 221, 325, 464, 1102
AluI AGCT 6 cut(s) 97, 198, 221, 325, 464, 1102
Alw21I GWGCWC 3 cut(s) 354, 760, 1058
Alw26I GTCTC 3 cut(s) 701, 782, 908
AlwI GGATC 1 cut(s) 167
Ama87I CYCGRG 2 cut(s) 40, 377
AoxI GGCC 4 cut(s) 247, 306, 405, 702
ApeKI GCWGC 6 cut(s) 118, 263, 470, 533, 595, 764
ApoI RAATTY 1 cut(s) 515
AseI ATTAAT 1 cut(s) 635
AspLEI GCGC 1 cut(s) 506
AspS9I GGNCC 3 cut(s) 109, 307, 1267
AsuC2I CCSGG 1 cut(s) 1010
AsuHPI GGTGA 4 cut(s) 28, 71, 560, 1234
AvaI CYCGRG 2 cut(s) 40, 377
AvaII GGWCC 2 cut(s) 109, 1267
BaeI ACNNNNGTAYC 2 cut(s) 708, 741
BanII GRGCYC 1 cut(s) 295
Bbv12I GWGCWC 3 cut(s) 354, 760, 1058
BbvI GCAGC 6 cut(s) 105, 250, 457, 545, 582, 751
BccI CCATC 4 cut(s) 27, 145, 995, 1199
BciT130I CCWGG 1 cut(s) 701
BcnI CCSGG 1 cut(s) 1010
BcoDI GTCTC 3 cut(s) 701, 782, 908
BcuI ACTAGT 2 cut(s) 167, 562
BfaI CTAG 4 cut(s) 168, 563, 603, 1152
BfmI CTRYAG 1 cut(s) 923
BisI GCNGC 6 cut(s) 119, 264, 471, 534, 596, 765
BlsI GCNGC 6 cut(s) 120, 265, 472, 535, 597, 766
Bme1390I CCNGG 2 cut(s) 701, 1010
Bme18I GGWCC 2 cut(s) 109, 1267
BmeT110I CYCGRG 2 cut(s) 40, 377
BmgT120I GGNCC 3 cut(s) 109, 307, 1267
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 2 cut(s) 701, 1010
BmsI GCATC 5 cut(s) 215, 487, 596, 1077, 1218
BpmI CTGGAG 2 cut(s) 77, 683
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 1010
BsaJI CCNNGG 2 cut(s) 408, 849
BsaWI WCCGGW 1 cut(s) 571
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 245, 328
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 2 cut(s) 30, 1233
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 2 cut(s) 408, 849
BseGI GGATG 3 cut(s) 19, 744, 1237
BseLI CCNNNNNNNGG 3 cut(s) 25, 245, 328
BseMII CTCAG 2 cut(s) 339, 763
BseNI ACTGG 2 cut(s) 30, 1233
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 6 cut(s) 105, 250, 457, 545, 582, 751
Bsh1236I CGCG 1 cut(s) 851
BshFI GGCC 4 cut(s) 249, 308, 407, 704
BsiHKAI GWGCWC 3 cut(s) 354, 760, 1058
BsiHKCI CYCGRG 2 cut(s) 40, 377
BsiSI CCGG 4 cut(s) 501, 572, 785, 1009
BslFI GGGAC 1 cut(s) 830
BslI CCNNNNNNNGG 3 cut(s) 25, 245, 328
BsmAI GTCTC 3 cut(s) 701, 782, 908
BsmFI GGGAC 1 cut(s) 830
BsnI GGCC 4 cut(s) 249, 308, 407, 704
BsoBI CYCGRG 2 cut(s) 40, 377
Bsp1286I GDGCHC 4 cut(s) 295, 354, 760, 1058
Bsp143I GATC 3 cut(s) 172, 489, 556
BspACI CCGC 6 cut(s) 177, 261, 832, 849, 851, 980
BspANI GGCC 4 cut(s) 249, 308, 407, 704
BspCNI CTCAG 2 cut(s) 340, 762
BspFNI CGCG 1 cut(s) 851
BspLI GGNNCC 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 927
BspPI GGATC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 2 cut(s) 30, 1233
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 2 cut(s) 408, 849
BssMI GATC 3 cut(s) 172, 489, 556
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 4 cut(s) 187, 397, 452, 808
Bst6I CTCTTC 3 cut(s) 163, 236, 1257
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 7 cut(s) 13, 200, 204, 247, 323, 502, 1100
BstDEI CTNAG 3 cut(s) 348, 749, 1028
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 3 cut(s) 19, 744, 1237
BstFNI CGCG 1 cut(s) 851
BstHHI GCGC 1 cut(s) 506
BstKTI GATC 3 cut(s) 175, 492, 559
BstMAI GTCTC 3 cut(s) 701, 782, 908
BstMBI GATC 3 cut(s) 172, 489, 556
BstMWI GCNNNNNNNGC 3 cut(s) 358, 470, 764
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 2 cut(s) 15, 725
BstSCI CCNGG 2 cut(s) 699, 1008
BstSFI CTRYAG 1 cut(s) 923
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 6 cut(s) 105, 250, 457, 545, 582, 751
BstXI CCANNNNNNTGG 1 cut(s) 223
BsuRI GGCC 4 cut(s) 249, 308, 407, 704
BtgI CCRYGG 1 cut(s) 849
BtsCI GGATG 3 cut(s) 19, 744, 1237
BtsIMutI CAGTG 3 cut(s) 23, 183, 1226
Cac8I GCNNGC 7 cut(s) 13, 200, 204, 247, 323, 502, 1100
CfoI GCGC 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 3 cut(s) 109, 307, 1267
Cfr42I CCGCGG 1 cut(s) 852
Csp6I GTAC 2 cut(s) 717, 1086
CviAII CATG 5 cut(s) 12, 528, 722, 868, 1199
CviQI GTAC 2 cut(s) 717, 1086
DdeI CTNAG 3 cut(s) 348, 749, 1028
DpnI GATC 3 cut(s) 174, 491, 558
DpnII GATC 3 cut(s) 172, 489, 556
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 3 cut(s) 163, 236, 1257
EarI CTCTTC 3 cut(s) 163, 236, 1257
EciI GGCGGA 1 cut(s) 995
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 109, 1267
Eco57I CTGAAG 1 cut(s) 27
Eco88I CYCGRG 2 cut(s) 40, 377
EcoO109I RGGNCCY 1 cut(s) 1267
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 5 cut(s) 15, 531, 725, 871, 1202
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 1 cut(s) 830
FatI CATG 5 cut(s) 11, 527, 721, 867, 1198
FauI CCCGC 2 cut(s) 184, 856
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 119, 264, 471, 534, 596, 765
FokI GGATG 3 cut(s) 6, 731, 1244
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 6 cut(s) 119, 264, 471, 534, 596, 765
FspBI CTAG 4 cut(s) 168, 563, 603, 1152
GlaI GCGC 1 cut(s) 505
GluI GCNGC 6 cut(s) 119, 264, 471, 534, 596, 765
GsuI CTGGAG 2 cut(s) 77, 683
HaeIII GGCC 4 cut(s) 249, 308, 407, 704
HapII CCGG 4 cut(s) 501, 572, 785, 1009
HhaI GCGC 1 cut(s) 506
Hin1II CATG 5 cut(s) 15, 531, 725, 871, 1202
Hin6I GCGC 1 cut(s) 504
HinP1I GCGC 1 cut(s) 504
HincII GTYRAC 3 cut(s) 274, 316, 654
HindII GTYRAC 3 cut(s) 274, 316, 654
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 7 cut(s) 439, 551, 987, 1005, 1022, 1036, 1171
HpaI GTTAAC 1 cut(s) 316
HpaII CCGG 4 cut(s) 501, 572, 785, 1009
HphI GGTGA 4 cut(s) 28, 71, 560, 1234
Hpy166II GTNNAC 4 cut(s) 274, 316, 654, 719
Hpy188I TCNGA 7 cut(s) 193, 331, 494, 556, 713, 752, 1021
Hpy188III TCNNGA 5 cut(s) 107, 302, 347, 603, 1040
Hpy8I GTNNAC 4 cut(s) 274, 316, 654, 719
Hpy99I CGWCG 2 cut(s) 275, 287
HpyAV CCTTC 3 cut(s) 281, 609, 970
HpyCH4III ACNGT 4 cut(s) 187, 397, 452, 808
HpyCH4V TGCA 7 cut(s) 15, 202, 279, 925, 1068, 1098, 1289
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 470, 764
HpyF3I CTNAG 3 cut(s) 348, 749, 1028
Hsp92II CATG 5 cut(s) 15, 531, 725, 871, 1202
HspAI GCGC 1 cut(s) 504
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
KspAI GTTAAC 1 cut(s) 316
KspI CCGCGG 1 cut(s) 852
Kzo9I GATC 3 cut(s) 172, 489, 556
LmnI GCTCC 3 cut(s) 290, 584, 1107
Lsp1109I GCAGC 6 cut(s) 105, 250, 457, 545, 582, 751
LweI GCATC 5 cut(s) 215, 487, 596, 1077, 1218
MaeI CTAG 4 cut(s) 168, 563, 603, 1152
MaeIII GTNAC 6 cut(s) 612, 679, 955, 1023, 1147, 1222
MalI GATC 3 cut(s) 174, 491, 558
MboI GATC 3 cut(s) 172, 489, 556
MboII GAAGA 4 cut(s) 150, 223, 1010, 1274
MhlI GDGCHC 4 cut(s) 295, 354, 760, 1058
MluCI AATT 4 cut(s) 515, 608, 874, 1116
MlyI GAGTC 3 cut(s) 448, 1031, 1045
MmeI TCCRAC 2 cut(s) 92, 999
MroNI GCCGGC 1 cut(s) 500
MseI TTAA 7 cut(s) 54, 315, 339, 363, 579, 635, 1050
MslI CAYNNNNRTG 4 cut(s) 546, 806, 1203, 1214
MspA1I CMGCKG 2 cut(s) 263, 851
MspI CCGG 4 cut(s) 501, 572, 785, 1009
MspR9I CCNGG 2 cut(s) 701, 1010
MvaI CCWGG 1 cut(s) 701
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 3 cut(s) 358, 470, 764
NaeI GCCGGC 1 cut(s) 502
NciI CCSGG 1 cut(s) 1010
NdeII GATC 3 cut(s) 172, 489, 556
NgoMIV GCCGGC 1 cut(s) 500
NlaIII CATG 5 cut(s) 15, 531, 725, 871, 1202
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 5 cut(s) 612, 679, 1023, 1147, 1222
NspI RCATGY 2 cut(s) 15, 725
OliI CACNNNNGTG 1 cut(s) 806
PaeI GCATGC 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 40
PciI ACATGT 1 cut(s) 721
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PdiI GCCGGC 1 cut(s) 502
PfeI GAWTC 4 cut(s) 551, 987, 1005, 1171
PflMI CCANNNNNTGG 2 cut(s) 25, 245
PkrI GCNGC 6 cut(s) 120, 265, 472, 535, 597, 766
PleI GAGTC 3 cut(s) 447, 1030, 1044
PpsI GAGTC 3 cut(s) 447, 1030, 1044
PpuMI RGGWCCY 1 cut(s) 1267
PscI ACATGT 1 cut(s) 721
PshBI ATTAAT 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 1267
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 3 cut(s) 109, 307, 1267
PspPPI RGGWCCY 1 cut(s) 1267
PspXI VCTCGAGB 1 cut(s) 40
PstI CTGCAG 1 cut(s) 927
RsaI GTAC 2 cut(s) 718, 1087
RsaNI GTAC 2 cut(s) 717, 1086
RseI CAYNNNNRTG 4 cut(s) 546, 806, 1203, 1214
SacII CCGCGG 1 cut(s) 852
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 7 cut(s) 54, 315, 339, 363, 579, 635, 1050
SatI GCNGC 6 cut(s) 119, 264, 471, 534, 596, 765
Sau3AI GATC 3 cut(s) 172, 489, 556
Sau96I GGNCC 3 cut(s) 109, 307, 1267
SchI GAGTC 3 cut(s) 448, 1031, 1045
ScrFI CCNGG 2 cut(s) 701, 1010
SduI GDGCHC 4 cut(s) 295, 354, 760, 1058
SfaNI GCATC 5 cut(s) 215, 487, 596, 1077, 1218
SfcI CTRYAG 1 cut(s) 923
Sfr274I CTCGAG 1 cut(s) 40
Sfr303I CCGCGG 1 cut(s) 852
SgrBI CCGCGG 1 cut(s) 852
SinI GGWCC 2 cut(s) 109, 1267
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 4 cut(s) 546, 806, 1203, 1214
SmlI CTYRAG 2 cut(s) 40, 302
SmoI CTYRAG 2 cut(s) 40, 302
SpeI ACTAGT 2 cut(s) 167, 562
SphI GCATGC 1 cut(s) 15
Sse9I AATT 4 cut(s) 515, 608, 874, 1116
SsiI CCGC 6 cut(s) 177, 261, 832, 849, 851, 980
SspMI CTAG 4 cut(s) 168, 563, 603, 1152
StyD4I CCNGG 2 cut(s) 699, 1008
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 4 cut(s) 187, 397, 452, 808
TaqI TCGA 5 cut(s) 41, 273, 779, 1188, 1212
TasI AATT 4 cut(s) 515, 608, 874, 1116
TfiI GAWTC 4 cut(s) 551, 987, 1005, 1171
Tru1I TTAA 7 cut(s) 54, 315, 339, 363, 579, 635, 1050
Tru9I TTAA 7 cut(s) 54, 315, 339, 363, 579, 635, 1050
TscAI CASTG 3 cut(s) 30, 190, 1233
TseFI GTSAC 5 cut(s) 612, 679, 1023, 1147, 1222
TseI GCWGC 6 cut(s) 118, 263, 470, 533, 595, 764
Tsp45I GTSAC 5 cut(s) 612, 679, 1023, 1147, 1222
TspDTI ATGAA 3 cut(s) 1128, 1248, 1266
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 3 cut(s) 30, 190, 1233
Van91I CCANNNNNTGG 2 cut(s) 25, 245
VpaK11BI GGWCC 2 cut(s) 109, 1267
VspI ATTAAT 1 cut(s) 635
XapI RAATTY 1 cut(s) 515
XbaI TCTAGA 1 cut(s) 602
XceI RCATGY 2 cut(s) 15, 725
XhoI CTCGAG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 4 cut(s) 168, 563, 603, 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.