Rroxscaffold_1G00018720

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001874
Physical Location & Seq
Forward (+)
22833460 .. 22837782
4323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018720.1

Sequence Viewer

Length: 234 bp
ATGAATTTGCATTATGTTCATGTAAAGAACTTTAAACAAGCCCATAAATGCCTTCTTCCTATGGGGGTCACCTCAGAAAATGTTGCCCATTGTTTTACTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGAATCTCATAGAAAGGCAGTTGTTGTTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGAAACCAAGGCACAGAGTATCCTCTACTCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

77

Amino Acids

8.65

Weight (kDa)

8.69

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 19 - 71 4.6e-16 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 4
AgsI TTSAA 2 cut(s) 105, 134
ApeKI GCWGC 2 cut(s) 125, 164
ApoI RAATTY 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 61
BbvI GCAGC 2 cut(s) 112, 151
BciVI GTATCC 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 227
BisI GCNGC 2 cut(s) 126, 165
BlsI GCNGC 2 cut(s) 127, 166
BsaJI CCNNGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 87
BseXI GCAGC 2 cut(s) 112, 151
Bsp143I GATC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 73
BstEII GGTNACC 1 cut(s) 67
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstPI GGTNACC 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 112, 151
BsuI GTATCC 1 cut(s) 227
CviAII CATG 1 cut(s) 20
CviJI RGCY 2 cut(s) 41, 125
CviKI_1 RGCY 2 cut(s) 41, 125
DdeI CTNAG 1 cut(s) 73
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DraI TTTAAA 2 cut(s) 34, 178
Eco130I CCWWGG 1 cut(s) 204
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 23
FaiI YATR 5 cut(s) 15, 21, 45, 62, 141
FatI CATG 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 126, 165
Fsp4HI GCNGC 2 cut(s) 126, 165
GluI GCNGC 2 cut(s) 126, 165
Hin1II CATG 1 cut(s) 23
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 76, 233
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 10, 128
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 1 cut(s) 23
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 4 cut(s) 95, 107, 153, 207
Lsp1109I GCAGC 2 cut(s) 112, 151
MaeIII GTNAC 2 cut(s) 67, 157
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 47
MluCI AATT 2 cut(s) 4, 186
MnlI CCTC 2 cut(s) 82, 230
MseI TTAA 2 cut(s) 33, 177
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 127, 166
PspEI GGTNACC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 130
SaqAI TTAA 2 cut(s) 33, 177
SatI GCNGC 2 cut(s) 126, 165
Sau3AI GATC 1 cut(s) 118
SetI ASST 1 cut(s) 74
SfcI CTRYAG 1 cut(s) 126
SgeI CNNG 9 cut(s) 32, 50, 117, 122, 128, 134, 180, 206, 217
Sse9I AATT 2 cut(s) 4, 186
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 100
TasI AATT 2 cut(s) 4, 186
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 2 cut(s) 33, 177
Tru9I TTAA 2 cut(s) 33, 177
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 125, 164
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 8, 17, 198
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.