Rh4CG003300

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001874
Physical Location & Seq
Reverse (-)
728445 .. 732970
4526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG003300.1

Sequence Viewer

Length: 966 bp
ATGGAGAAAGCGATCAACAGGCAGAAGGTTCTCCTTGACCACCTCCGACCTTCTTCTTCTACCGACGACTCTTCTCTCTCCGCGTCGGCATGTGCCGCTGGGGATAGTGCTGCCTATGCAAGGACAAACGTGTTTGGGGATGATGTCGTTATTGTAGCAGCTTATCGCACTCCACTCTGCAAGGCCAAACGCGGCGGCTTCAAAGATACTCATGCCGATGATCTCCTTGCACCTGTTCTCAAGGCAGTGATTGAGAAAACCAATCTGAATCCAAAGGAAGTCGGGGATATTGTTGTCGGTACCGTGTTGGCTCCCGGATCTCAAAGAGCTAGCGAATGCAGGATGGCTGCTTTCTATGCTGGCTTCCCTGAAACTGTGCCGGTTAGAACTGTGAACAGACAATGTTCGTCTGGGCTTCAAGCAGTTGCTGATGTAGCTGCTTCTATAAGAGCAGGGTTTTATGACATTGGTATTGGAGCTGGGTTGGAATCCATGACTGTAAACCCAATGGCATGGGAAGGGGATGTTAATCCTAAAGTAAAGATCTTTGAACAAGCCCAGAATTGCCTTCTTCCTATGGGGGTCACCTCGGAAAATGTTGCTCATCGTTTTGGTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGCAGCTGCTGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGATTGTTGATCCAAAATCTGGTGATGAAAAACCTGTTACAATCTCTGTTGATGATGGGATTCGAAACACAACATTGTCGGACCTAGCAAAGCTGAAGCCTGTGTTTAAGAAAGATGGGACCACCACTGCTGGTAATTCTAGTCAAGTTAGTGATGGTGCTGGAGCTGTTCTCTTGATGAAGAGAAGTGTTGCCGACCAAAAAGGAATTCCAATTCTTGGTGTATTCAGGTATGCTGCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

321

Amino Acids

33.82

Weight (kDa)

8.2

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 49 - 303 3e-78 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 2 cut(s) 740, 938
AccII CGCG 2 cut(s) 83, 192
AciI CCGC 4 cut(s) 81, 96, 192, 195
AclWI GGATC 2 cut(s) 325, 725
AcsI RAATTY 1 cut(s) 927
AcuI CTGAAG 1 cut(s) 836
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 3 cut(s) 120, 740, 938
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 4 cut(s) 202, 419, 551, 621
AjuI GAANNNNNNNTTGG 2 cut(s) 912, 944
AluBI AGCT 7 cut(s) 161, 329, 437, 479, 668, 814, 887
AluI AGCT 7 cut(s) 161, 329, 437, 479, 668, 814, 887
AlwI GGATC 2 cut(s) 325, 725
AlwNI CAGNNNCTG 2 cut(s) 428, 671
AoxI GGCC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 927
Asp718I GGTACC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 802, 840
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 577, 755
AsuII TTCGAA 1 cut(s) 784
AsuNHI GCTAGC 1 cut(s) 329
AvaII GGWCC 2 cut(s) 802, 840
BanI GGYRCC 1 cut(s) 299
BccI CCATC 4 cut(s) 337, 770, 830, 869
BcnI CCSGG 1 cut(s) 315
BfaI CTAG 3 cut(s) 330, 806, 861
BfmI CTRYAG 1 cut(s) 642
BglII AGATCT 1 cut(s) 543
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 2 cut(s) 802, 840
BmgT120I GGNCC 2 cut(s) 802, 840
BmiI GGNNCC 3 cut(s) 301, 312, 841
BmrFI CCNGG 1 cut(s) 315
BmtI GCTAGC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 876, 908
BpmI CTGGAG 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 784
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 1 cut(s) 588
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 740, 938
Bse118I RCCGGY 1 cut(s) 379
Bse8I GATNNNNATC 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 3 cut(s) 145, 348, 529
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 3 cut(s) 120, 740, 938
BseYI CCCAGC 2 cut(s) 98, 479
Bsh1236I CGCG 2 cut(s) 83, 192
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 299
BsiSI CCGG 2 cut(s) 315, 380
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 3 cut(s) 120, 740, 938
BsmFI GGGAC 1 cut(s) 853
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 784
Bsp143I GATC 6 cut(s) 12, 220, 317, 543, 634, 730
BspACI CCGC 4 cut(s) 81, 96, 192, 195
BspANI GGCC 1 cut(s) 185
BspFNI CGCG 2 cut(s) 83, 192
BspLI GGNNCC 3 cut(s) 301, 312, 841
BspMAI CTGCAG 1 cut(s) 646
BspOI GCTAGC 1 cut(s) 333
BspPI GGATC 2 cut(s) 325, 725
BspT104I TTCGAA 1 cut(s) 784
BspT107I GGYRCC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 6 cut(s) 12, 220, 317, 543, 634, 730
Bst4CI ACNGT 4 cut(s) 304, 376, 391, 499
Bst6I CTCTTC 2 cut(s) 76, 896
BstAPI GCANNNNNTGC 1 cut(s) 671
BstBI TTCGAA 1 cut(s) 784
BstC8I GCNNGC 2 cut(s) 331, 361
BstEII GGTNACC 1 cut(s) 583
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 3 cut(s) 145, 348, 529
BstFNI CGCG 2 cut(s) 83, 192
BstKTI GATC 6 cut(s) 15, 223, 320, 546, 637, 733
BstMBI GATC 6 cut(s) 12, 220, 317, 543, 634, 730
BstMWI GCNNNNNNNGC 7 cut(s) 95, 116, 356, 434, 671, 677, 680
BstNSI RCATGY 1 cut(s) 93
BstPI GGTNACC 1 cut(s) 583
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 642
BstUI CGCG 2 cut(s) 83, 192
BstX2I RGATCY 2 cut(s) 317, 543
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 2 cut(s) 317, 543
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 3 cut(s) 145, 348, 529
BtsI GCAGTG 2 cut(s) 252, 846
BtsIMutI CAGTG 2 cut(s) 252, 846
Cac8I GCNNGC 2 cut(s) 331, 361
CaiI CAGNNNCTG 2 cut(s) 428, 671
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 802, 840
CseI GACGC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 300
CviAII CATG 5 cut(s) 90, 212, 493, 513, 963
CviQI GTAC 1 cut(s) 300
DpnI GATC 6 cut(s) 14, 222, 319, 545, 636, 732
DpnII GATC 6 cut(s) 12, 220, 317, 543, 634, 730
DraI TTTAAA 1 cut(s) 694
Eam1104I CTCTTC 2 cut(s) 76, 896
EarI CTCTTC 2 cut(s) 76, 896
Eco47I GGWCC 2 cut(s) 802, 840
Eco57I CTGAAG 1 cut(s) 836
Eco91I GGTNACC 1 cut(s) 583
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 583
EcoRI GAATTC 1 cut(s) 927
FaeI CATG 5 cut(s) 93, 215, 496, 516, 966
FaqI GGGAC 1 cut(s) 853
FatI CATG 5 cut(s) 89, 211, 492, 512, 962
FokI GGATG 3 cut(s) 152, 355, 536
FspBI CTAG 3 cut(s) 330, 806, 861
GsaI CCCAGC 2 cut(s) 102, 483
GsuI CTGGAG 1 cut(s) 903
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 315, 380
HgaI GACGC 1 cut(s) 72
Hin1II CATG 5 cut(s) 93, 215, 496, 516, 966
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 5 cut(s) 68, 268, 488, 650, 781
HpaII CCGG 2 cut(s) 315, 380
HphI GGTGA 2 cut(s) 577, 755
Hpy166II GTNNAC 3 cut(s) 394, 502, 649
Hpy188I TCNGA 4 cut(s) 47, 267, 592, 802
Hpy188III TCNNGA 1 cut(s) 895
Hpy8I GTNNAC 3 cut(s) 394, 502, 649
Hpy99I CGWCG 2 cut(s) 68, 88
HpyAV CCTTC 4 cut(s) 19, 60, 512, 578
HpyCH4III ACNGT 4 cut(s) 304, 376, 391, 499
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 5 cut(s) 119, 180, 230, 339, 644
HpyF10VI GCNNNNNNNGC 7 cut(s) 95, 116, 356, 434, 671, 677, 680
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 5 cut(s) 93, 215, 496, 516, 966
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 6 cut(s) 12, 220, 317, 543, 634, 730
LmnI GCTCC 5 cut(s) 316, 476, 628, 884, 964
MaeI CTAG 3 cut(s) 330, 806, 861
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 583, 757
MalI GATC 6 cut(s) 14, 222, 319, 545, 636, 732
MboI GATC 6 cut(s) 12, 220, 317, 543, 634, 730
MboII GAAGA 5 cut(s) 45, 48, 63, 563, 913
MflI RGATCY 2 cut(s) 317, 543
MluCI AATT 5 cut(s) 562, 702, 856, 927, 933
MlyI GAGTC 2 cut(s) 62, 644
MmeI TCCRAC 3 cut(s) 70, 465, 780
MnlI CCTC 2 cut(s) 53, 598
MseI TTAA 3 cut(s) 528, 693, 828
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 2 cut(s) 98, 668
MspI CCGG 2 cut(s) 315, 380
MspR9I CCNGG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 341
MvnI CGCG 2 cut(s) 83, 192
MwoI GCNNNNNNNGC 7 cut(s) 95, 116, 356, 434, 671, 677, 680
NciI CCSGG 1 cut(s) 315
NdeII GATC 6 cut(s) 12, 220, 317, 543, 634, 730
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 5 cut(s) 93, 215, 496, 516, 966
NlaIV GGNNCC 3 cut(s) 301, 312, 841
NmuCI GTSAC 1 cut(s) 583
NspI RCATGY 1 cut(s) 93
NspV TTCGAA 1 cut(s) 784
PctI GAATGC 1 cut(s) 341
PfeI GAWTC 3 cut(s) 268, 488, 781
PflMI CCANNNNNTGG 2 cut(s) 740, 938
PfoI TCCNGGA 1 cut(s) 313
PleI GAGTC 2 cut(s) 62, 644
PpsI GAGTC 2 cut(s) 62, 644
PspEI GGTNACC 1 cut(s) 583
PspFI CCCAGC 2 cut(s) 98, 479
PspN4I GGNNCC 3 cut(s) 301, 312, 841
PspPI GGNCC 2 cut(s) 802, 840
PstI CTGCAG 1 cut(s) 646
PstNI CAGNNNCTG 2 cut(s) 428, 671
PsuI RGATCY 2 cut(s) 317, 543
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 3 cut(s) 528, 693, 828
Sau3AI GATC 6 cut(s) 12, 220, 317, 543, 634, 730
Sau96I GGNCC 2 cut(s) 802, 840
SchI GAGTC 2 cut(s) 62, 644
ScrFI CCNGG 1 cut(s) 315
SfcI CTRYAG 1 cut(s) 642
SfuI TTCGAA 1 cut(s) 784
SinI GGWCC 2 cut(s) 802, 840
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 5 cut(s) 562, 702, 856, 927, 933
SsiI CCGC 4 cut(s) 81, 96, 192, 195
SspMI CTAG 3 cut(s) 330, 806, 861
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 4 cut(s) 304, 376, 391, 499
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 784
TasI AATT 5 cut(s) 562, 702, 856, 927, 933
TauI GCSGC 3 cut(s) 98, 195, 198
TfiI GAWTC 3 cut(s) 268, 488, 781
Tru1I TTAA 3 cut(s) 528, 693, 828
Tru9I TTAA 3 cut(s) 528, 693, 828
TscAI CASTG 2 cut(s) 252, 853
TseFI GTSAC 1 cut(s) 583
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 3 cut(s) 714, 762, 914
TspRI CASTG 2 cut(s) 252, 853
Van91I CCANNNNNTGG 2 cut(s) 740, 938
VpaK11BI GGWCC 2 cut(s) 802, 840
XagI CCTNNNNNAGG 1 cut(s) 118
XapI RAATTY 1 cut(s) 927
XceI RCATGY 1 cut(s) 93
XspI CTAG 3 cut(s) 330, 806, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.