Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010556.1

Orthogroup ID

OG0001874

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2540

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010556.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 613 bp

gagatgtctgtcgtttgcagaaactgtgccggttagaattgtgaacagacaatgttcatctaggcttcaagcagttgctgatgtagctgcttctataagagcagggttttatgacattggtattggagctgggttggaatccatgactgtaaacccaatggcatgggaaggggatgtaaagatctttgaacaagcccagaattgccttcttcctatgggggtcaccttggaaaatgttgctcatcattttggtgtttcaaggcaggagcaagatcaggcttcagtttactctcatagaaaggcagctgctgctactgctgctactgctgctggtagatttaaagatgaaattatccctgtggcaaccaagattgttgatccaaaatctggtgatgagaaacctgttacaatctccgttgatgatgggattcgaaacacaacattgtcggacctagcaaagctgaagcctgtgtttaagaaagatgggaccaccactactggtaattctagtcaagttagtgatggtgctagagctgttctcttgatgaagagaagtgttgccgaccaaaaaggaattccaattcttggtgtattcaggtatgctgctccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

203

Amino Acids

21.65

Weight (kDa)

8.8

Isoelectric Point (pI)

26.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04710 AT2G33150
fragaria_vesca	FvH4_4g00310
malus_domestica	MD04G1003800.v1.1
prunus_persica	Prupe.1G003300_v2.0.a1 Prupe.1G003300_v2.0.a1
pyrus_communis	pycom04g00390
rosa_chinensis	RchiOBHm_Chr4g0385141 RchiOBHm_Chr4g0415491 RchiOBHm_Chr6g0275511
rosa_laevigata	RLG00000005750 RLG00000010254
rosa_multiflora	Rmu_sc0003086.1_g000005 Rmu_sc0008734.1_g000018 Rmu_sc0010556.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010730 Rroxscaffold_1G00018720 Rroxscaffold_1G00054220 Rroxscaffold_3G00240070 Rroxscaffold_5G00333060 Rroxscaffold_5G00355890 Rroxscaffold_6G00390920
rosa_rugosa	Rorug03G0299900
rosa_samantha	Rh1BG085600 Rh2BG386800 Rh2BG500100 Rh2DG511300 Rh4AG003100 Rh4BG002500 Rh4BG187100 Rh4CG003300 Rh4DG002800 Rh5AG250800 Rh5AG295600 Rh5AG385400 Rh5AG466200 Rh5BG246000 Rh5DG254500 Rh6DG201600 Rh7CG178800 Rh7CG381300 Rh7DG359400
rosa_wichuraiana	Rw3G018530 Rw4G000620 Rw7G039000 Rw7G041060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	387, 585
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	2 cut(s)	265, 483
AfiI	CCNNNNNNNGG	2 cut(s)	387, 585
AgsI	TTSAA	3 cut(s)	69, 189, 259
AjuI	GAANNNNNNNTTGG	2 cut(s)	559, 591
AluBI	AGCT	5 cut(s)	87, 129, 306, 461, 534
AluI	AGCT	5 cut(s)	87, 129, 306, 461, 534
AlwI	GGATC	1 cut(s)	372
AlwNI	CAGNNNCTG	3 cut(s)	24, 78, 309
ApeKI	GCWGC	7 cut(s)	87, 303, 306, 309, 318, 327, 603
ApoI	RAATTY	1 cut(s)	574
AspS9I	GGNCC	2 cut(s)	449, 487
AsuHPI	GGTGA	2 cut(s)	215, 402
AsuII	TTCGAA	1 cut(s)	431
AvaII	GGWCC	2 cut(s)	449, 487
BbvI	GCAGC	7 cut(s)	74, 293, 296, 305, 314, 315, 590
BccI	CCATC	3 cut(s)	417, 477, 516
BfaI	CTAG	4 cut(s)	61, 453, 508, 529
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	7 cut(s)	88, 304, 307, 310, 319, 328, 604
BlsI	GCNGC	7 cut(s)	89, 305, 308, 311, 320, 329, 605
Bme18I	GGWCC	2 cut(s)	449, 487
BmgT120I	GGNCC	2 cut(s)	449, 487
BmiI	GGNNCC	1 cut(s)	488
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
Bpu14I	TTCGAA	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	387, 585
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	387, 585
BseNI	ACTGG	1 cut(s)	503
BseXI	GCAGC	7 cut(s)	74, 293, 296, 305, 314, 315, 590
BseYI	CCCAGC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	387, 585
BsmFI	GGGAC	1 cut(s)	500
Bsp119I	TTCGAA	1 cut(s)	431
Bsp143I	GATC	3 cut(s)	181, 272, 377
BspLI	GGNNCC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	372
BspT104I	TTCGAA	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	3 cut(s)	181, 272, 377
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	26, 149
Bst6I	CTCTTC	1 cut(s)	543
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	431
BstEII	GGTNACC	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	3 cut(s)	184, 275, 380
BstMBI	GATC	3 cut(s)	181, 272, 377
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 309, 315, 318, 324, 327
BstPI	GGTNACC	1 cut(s)	221
BstV1I	GCAGC	7 cut(s)	74, 293, 296, 305, 314, 315, 590
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	179
CaiI	CAGNNNCTG	3 cut(s)	24, 78, 309
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	449, 487
CviAII	CATG	2 cut(s)	143, 163
CviJI	RGCY	9 cut(s)	65, 87, 129, 195, 279, 306, 461, 467, 534
CviKI_1	RGCY	9 cut(s)	65, 87, 129, 195, 279, 306, 461, 467, 534
DpnI	GATC	3 cut(s)	183, 274, 379
DpnII	GATC	3 cut(s)	181, 272, 377
DraI	TTTAAA	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	449, 487
Eco57I	CTGAAG	2 cut(s)	265, 483
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	146, 166
FaiI	YATR	7 cut(s)	96, 112, 144, 164, 216, 295, 601
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	2 cut(s)	142, 162
Fnu4HI	GCNGC	7 cut(s)	88, 304, 307, 310, 319, 328, 604
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	7 cut(s)	88, 304, 307, 310, 319, 328, 604
FspBI	CTAG	4 cut(s)	61, 453, 508, 529
GluI	GCNGC	7 cut(s)	88, 304, 307, 310, 319, 328, 604
GsaI	CCCAGC	1 cut(s)	133
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	2 cut(s)	146, 166
HinfI	GANTC	2 cut(s)	138, 428
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	215, 402
Hpy166II	GTNNAC	3 cut(s)	44, 152, 287
Hpy188I	TCNGA	1 cut(s)	449
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	3 cut(s)	44, 152, 287
HpyAV	CCTTC	2 cut(s)	162, 216
HpyCH4III	ACNGT	2 cut(s)	26, 149
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 309, 315, 318, 324, 327
Hsp92II	CATG	2 cut(s)	146, 166
Kzo9I	GATC	3 cut(s)	181, 272, 377
LmnI	GCTCC	3 cut(s)	126, 266, 611
Lsp1109I	GCAGC	7 cut(s)	74, 293, 296, 305, 314, 315, 590
MaeI	CTAG	4 cut(s)	61, 453, 508, 529
MaeIII	GTNAC	2 cut(s)	221, 404
MalI	GATC	3 cut(s)	183, 274, 379
MboI	GATC	3 cut(s)	181, 272, 377
MboII	GAAGA	2 cut(s)	201, 560
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	6 cut(s)	37, 200, 349, 503, 574, 580
MmeI	TCCRAC	2 cut(s)	115, 427
MseI	TTAA	2 cut(s)	340, 475
MslI	CAYNNNNRTG	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	6 cut(s)	84, 309, 315, 318, 324, 327
NdeII	GATC	3 cut(s)	181, 272, 377
NlaIII	CATG	2 cut(s)	146, 166
NlaIV	GGNNCC	1 cut(s)	488
NmuCI	GTSAC	1 cut(s)	221
NspV	TTCGAA	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	138, 428
PflMI	CCANNNNNTGG	2 cut(s)	387, 585
PkrI	GCNGC	7 cut(s)	89, 305, 308, 311, 320, 329, 605
PspEI	GGTNACC	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	2 cut(s)	449, 487
PstNI	CAGNNNCTG	3 cut(s)	24, 78, 309
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	306
RseI	CAYNNNNRTG	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	340, 475
SatI	GCNGC	7 cut(s)	88, 304, 307, 310, 319, 328, 604
Sau3AI	GATC	3 cut(s)	181, 272, 377
Sau96I	GGNCC	2 cut(s)	449, 487
SetI	ASST	9 cut(s)	89, 131, 228, 308, 404, 454, 463, 536, 600
SfuI	TTCGAA	1 cut(s)	431
SinI	GGWCC	2 cut(s)	449, 487
SmiMI	CAYNNNNRTG	1 cut(s)	250
Sse9I	AATT	6 cut(s)	37, 200, 349, 503, 574, 580
SspMI	CTAG	4 cut(s)	61, 453, 508, 529
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	26, 149
TaqI	TCGA	1 cut(s)	431
TasI	AATT	6 cut(s)	37, 200, 349, 503, 574, 580
TfiI	GAWTC	2 cut(s)	138, 428
Tru1I	TTAA	2 cut(s)	340, 475
Tru9I	TTAA	2 cut(s)	340, 475
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	7 cut(s)	87, 303, 306, 309, 318, 327, 603
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	46, 361, 561
TspGWI	ACGGA	2 cut(s)	404, 598
Van91I	CCANNNNNTGG	2 cut(s)	387, 585
VpaK11BI	GGWCC	2 cut(s)	449, 487
XapI	RAATTY	1 cut(s)	574
XspI	CTAG	4 cut(s)	61, 453, 508, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.