Rh6DG201600

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001874
Physical Location & Seq
Reverse (-)
35986069 .. 35996185
10117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG201600.1

Sequence Viewer

Length: 360 bp
ATGGGGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGCAATTGTTGTTATTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGGTGCTAGAGTCGAGGGAGGCTGAGCACGGGATTGATGAGAATGATTCAGTAGCTATGATGAGGACTACTGAGGAAGCCTTGGAAGCACAGAAAAATTGGAAGAAGCTGACTTTTAGAGCAACTCTGATGCCAAGCTTTTATCAGAAGCCTCCGCCTCCTAAGGTGGTGCTAAAGAAGGCTACTTTCTCTGGTACAAAATATGAAGATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

119

Amino Acids

13.29

Weight (kDa)

6.84

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 1 - 78 3.8e-15 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 299
AfaI GTAC 1 cut(s) 340
AgsI TTSAA 1 cut(s) 45
AluBI AGCT 3 cut(s) 200, 253, 282
AluI AGCT 3 cut(s) 200, 253, 282
Alw21I GWGCWC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 65, 104
AxyI CCTNAGG 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 52, 91
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 2 cut(s) 66, 105
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 2 cut(s) 67, 106
BmsI GCATC 2 cut(s) 264, 343
Bpu1102I GCTNAGC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 144, 225
Bse21I CCTNAGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 144, 225
BseMII CTCAG 3 cut(s) 27, 159, 207
BseXI GCAGC 2 cut(s) 52, 91
BsiHKAI GWGCWC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 58
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 1 cut(s) 299
BspCNI CTCAG 3 cut(s) 26, 160, 208
BspMAI CTGCAG 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 144, 225
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 2 cut(s) 144, 225
Bst4CI ACNGT 1 cut(s) 40
BstDEI CTNAG 4 cut(s) 13, 168, 216, 306
BstEII GGTNACC 1 cut(s) 7
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstPI GGTNACC 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 52, 91
Bsu36I CCTNAGG 1 cut(s) 306
Csp6I GTAC 1 cut(s) 339
CviAII CATG 1 cut(s) 357
CviJI RGCY 8 cut(s) 65, 167, 200, 224, 253, 282, 295, 326
CviKI_1 RGCY 8 cut(s) 65, 167, 200, 224, 253, 282, 295, 326
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 4 cut(s) 13, 168, 216, 306
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
DraI TTTAAA 1 cut(s) 118
EciI GGCGGA 1 cut(s) 288
Eco130I CCWWGG 2 cut(s) 144, 225
Eco81I CCTNAGG 1 cut(s) 306
Eco91I GGTNACC 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 7
EcoT14I CCWWGG 2 cut(s) 144, 225
EcoT22I ATGCAT 1 cut(s) 358
ErhI CCWWGG 2 cut(s) 144, 225
FaeI CATG 1 cut(s) 360
FaiI YATR 4 cut(s) 81, 203, 348, 358
FatI CATG 1 cut(s) 356
Fnu4HI GCNGC 2 cut(s) 66, 105
Fsp4HI GCNGC 2 cut(s) 66, 105
FspBI CTAG 1 cut(s) 152
GluI GCNGC 2 cut(s) 66, 105
Hin1II CATG 1 cut(s) 360
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 3 cut(s) 74, 155, 191
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 16, 273, 291
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 68, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 4 cut(s) 13, 168, 216, 306
Hsp92II CATG 1 cut(s) 360
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 35, 47, 93, 147, 321
Lsp1109I GCAGC 2 cut(s) 52, 91
LweI GCATC 2 cut(s) 264, 343
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 259
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 3 cut(s) 90, 126, 241
MlyI GAGTC 2 cut(s) 68, 164
MnlI CCTC 7 cut(s) 22, 153, 157, 201, 211, 306, 312
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 1 cut(s) 117
MunI CAATTG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 1 cut(s) 58
NlaIII CATG 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 358
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 67, 106
PleI GAGTC 2 cut(s) 68, 163
PpsI GAGTC 2 cut(s) 68, 163
PspEI GGTNACC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 70
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 66, 105
Sau3AI GATC 1 cut(s) 58
SchI GAGTC 2 cut(s) 68, 164
SduI GDGCHC 1 cut(s) 174
SetI ASST 6 cut(s) 14, 150, 202, 255, 284, 312
SfaNI GCATC 2 cut(s) 264, 343
SfcI CTRYAG 1 cut(s) 66
Sse9I AATT 3 cut(s) 90, 126, 241
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 152
StyI CCWWGG 2 cut(s) 144, 225
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 158
TasI AATT 3 cut(s) 90, 126, 241
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 2 cut(s) 65, 104
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 138
XspI CTAG 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.