Rh5DG254500
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001874
Physical Location & Seq
Forward (+)
29713169 .. 29731263
18095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG254500.1

Sequence Viewer

Length: 567 bp
ATGACATTGGTAAAGATCTTTAAACAAACCCAAAATTGCCTTCTTCCTATGGGGGTCACCTCAGAAAATGTTGCTAATTGTTTTACTGTTTCAAGGCAGGAGCAAGAACAGGCTGCAGTTGACTCTCATAGAAAGGCAGTTGTTGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGTCAACCAAGGTGTTTGAGATTGCAAAGGCTATGGCTTGGGTTCCAGTTGGAGCAGACAAGAATAAGACATATCTTCATCTTAACCAATGGATACCAGATGAACTTAAATTTGATCTGAACTGCCTTCTGTATACACATGGTAAGCTCTACCGCAAGTGCATCAAGAAAGGATGTAGCACTGGTAAGCAGCAAGAAAAGGAATACGAGGATATCAATTCCAACTTCATGACCCTACAAAAGATACTTATCACTCTCGAGGCACGTAGATTTAGTCAATACACTTCAGGGTCTTCTTTACCCAGAAAGAGTGTGGGATTGTGGGAAATATCCTGGCAAATTCATCTTTTGCCAACAACTAACATTCCCAAGAATGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

188

Amino Acids

21.32

Weight (kDa)

9.28

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 15 - 68 3.6e-15 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 317
AciI CCGC 1 cut(s) 337
AcsI RAATTY 2 cut(s) 293, 522
AcuI CTGAAG 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 557
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 1 cut(s) 515
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Ama87I CYCGRG 1 cut(s) 440
ApeKI GCWGC 3 cut(s) 113, 152, 373
ApoI RAATTY 2 cut(s) 293, 522
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 3 cut(s) 100, 139, 385
BciT130I CCWGG 1 cut(s) 517
BciVI GTATCC 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 114
BfuI GTATCC 1 cut(s) 270
BglII AGATCT 1 cut(s) 15
BisI GCNGC 3 cut(s) 114, 153, 374
BlsI GCNGC 3 cut(s) 115, 154, 375
Bme1390I CCNGG 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 440
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 517
BmsI GCATC 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 449
BsaBI GATNNNNATC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse1I ACTGG 2 cut(s) 230, 370
Bse8I GATNNNNATC 1 cut(s) 431
BseBI CCWGG 1 cut(s) 517
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 362
BseJI GATNNNNATC 1 cut(s) 431
BseLI CCNNNNNNNGG 1 cut(s) 557
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 230, 370
BseXI GCAGC 3 cut(s) 100, 139, 385
BsiHKCI CYCGRG 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 557
BsoBI CYCGRG 1 cut(s) 440
Bsp143I GATC 2 cut(s) 15, 298
BspACI CCGC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 74
BspHI TCATGA 2 cut(s) 411, 563
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 118
BsrI ACTGG 2 cut(s) 230, 370
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 15, 298
BssNAI GTATAC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 192
Bst1107I GTATAC 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 517
Bst4CI ACNGT 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 449
BstDEI CTNAG 1 cut(s) 61
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 2 cut(s) 18, 301
BstMBI GATC 2 cut(s) 15, 298
BstMWI GCNNNNNNNGC 2 cut(s) 143, 152
BstNI CCWGG 1 cut(s) 517
BstPI GGTNACC 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 515
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 100, 139, 385
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BstZ17I GTATAC 1 cut(s) 318
BsuI GTATCC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 363
CciI TCATGA 2 cut(s) 411, 563
CviAII CATG 3 cut(s) 323, 412, 564
CviJI RGCY 4 cut(s) 113, 215, 221, 331
CviKI_1 RGCY 4 cut(s) 113, 215, 221, 331
DdeI CTNAG 1 cut(s) 61
DpnI GATC 2 cut(s) 17, 300
DpnII GATC 2 cut(s) 15, 298
DraI TTTAAA 2 cut(s) 22, 166
Eco130I CCWWGG 1 cut(s) 192
Eco32I GATATC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 440
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 515
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 3 cut(s) 326, 415, 567
FaiI YATR 8 cut(s) 50, 129, 218, 256, 318, 324, 413, 565
FatI CATG 3 cut(s) 322, 411, 563
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 3 cut(s) 114, 153, 374
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 3 cut(s) 114, 153, 374
GluI GCNGC 3 cut(s) 114, 153, 374
Hin1II CATG 3 cut(s) 326, 415, 567
HincII GTYRAC 2 cut(s) 121, 189
HindII GTYRAC 2 cut(s) 121, 189
HinfI GANTC 1 cut(s) 122
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 3 cut(s) 121, 189, 318
Hpy188I TCNGA 2 cut(s) 64, 303
Hpy188III TCNNGA 4 cut(s) 349, 412, 440, 564
Hpy8I GTNNAC 3 cut(s) 121, 189, 318
HpyAV CCTTC 2 cut(s) 50, 320
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 3 cut(s) 116, 209, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 152
HpyF3I CTNAG 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 3 cut(s) 326, 415, 567
Kzo9I GATC 2 cut(s) 15, 298
LmnI GCTCC 2 cut(s) 100, 236
Lsp1109I GCAGC 3 cut(s) 100, 139, 385
LweI GCATC 1 cut(s) 354
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 17, 300
MboI GATC 2 cut(s) 15, 298
MboII GAAGA 3 cut(s) 35, 251, 468
MflI RGATCY 1 cut(s) 15
MluCI AATT 6 cut(s) 34, 76, 174, 293, 400, 522
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 214, 429
MnlI CCTC 3 cut(s) 70, 385, 436
MseI TTAA 4 cut(s) 21, 165, 267, 291
MspR9I CCNGG 1 cut(s) 517
MvaI CCWGG 1 cut(s) 517
MwoI GCNNNNNNNGC 2 cut(s) 143, 152
NdeII GATC 2 cut(s) 15, 298
NlaIII CATG 3 cut(s) 326, 415, 567
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 55
PaeR7I CTCGAG 1 cut(s) 440
PagI TCATGA 2 cut(s) 411, 563
PkrI GCNGC 3 cut(s) 115, 154, 375
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Ppu21I YACGTR 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 515
PspEI GGTNACC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 228
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 15
SaqAI TTAA 4 cut(s) 21, 165, 267, 291
SatI GCNGC 3 cut(s) 114, 153, 374
Sau3AI GATC 2 cut(s) 15, 298
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 517
SetI ASST 4 cut(s) 62, 198, 333, 451
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 440
SlaI CTCGAG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 6 cut(s) 34, 76, 174, 293, 400, 522
SsiI CCGC 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 515
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 451
TaqI TCGA 1 cut(s) 441
TasI AATT 6 cut(s) 34, 76, 174, 293, 400, 522
Tru1I TTAA 4 cut(s) 21, 165, 267, 291
Tru9I TTAA 4 cut(s) 21, 165, 267, 291
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 113, 152, 373
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 6 cut(s) 186, 251, 300, 400, 515, 552
TspRI CASTG 1 cut(s) 370
XapI RAATTY 2 cut(s) 293, 522
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XhoI CTCGAG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.