Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001874

Physical Location & Seq

Genomic Coordinates Reverse (-)

580406 .. 583856

Gene Structure 3451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG002500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGAGAAAGCGATCAACAGGCAGAAGGTTCTCCTTGACCACCTCCGACCTTCTTCTTCTTCTTCTTCTACCGACGACTCTTCTCTCTCCGCGTCGGCATGTGCCGCTGGGGATAGTGCTGCCTATGCAAGGACAAACGTGTTTGGGGATGATGTCGTTATTGTAGCAGCTTATCGCACTCCACTCTGCAAGGCCAAACGCGGTGGCTTCAAGGATACTCATGCCGATGATCTTCTTGCACCTGTTCTCAAGGCAGTGATTGAGAAAACCAATCTGAATCCAAAGGAAGTTGGGGATATTGTTGTCGGTTCCGTGTTGGCTCCCGGATCTCAAAGAGCTAGCGAATGCAGGATGGCTGCTTTCTATGCTGGCTTCCCTGAAACTGTGCCGGTTAGAACTGTGAACAGACAATGTTCGTCTGGGCTTCAAGCAGTTGCTGATGTAGCTGCTTCTATAAGAGCAGGGTTTTATGACATTGGTATTGGAGCTGGGTTGGAATCCATGACTGCAAACCCAATGGCATGGGAAGGGGATGTTAATCCTAAAGTAAAGATCTTTGAACAAGCCCAGAATTGCCTTCTTCCTATGGGGATCACCTCAGAAAATGTTGCTCATCGTTTTGGTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGCAGCTGCTGCTACTGCTTCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGATTGTTGATCCAAAAACTGGTGATGAGAAACCTGTTACAATCTCTGTTGATGATGGGATTCGAAACACAACATTGTCGGACCTAGCAAAGCTGAAGCCTGTGTTTAAGAAAGATGGGACCACCACTGCTGGTAATTCTAGTCAAGTTAGTGATGGTGCTGGAGCTGTTCTCTTGATGAAGAGAAGTGTTGCCGACCAAAAAGGAATTCCAATTCTTGGTGTATTCAGGAGTTTCGTTGCTGTTGGTGTGGATCCTGCCATCATGGGTGTTGGCCCAGCTGCTGCAATTCCAGTTGCAGTCAAGGCAGCTGGTTTAGAGCTTGATGATATTGACCTTTTTGAGATAAATGAGGCTTTTGCTTCCCAATTTGTGTATTGCCGTAACAAGCTAGGACTTGATCCAGAAAAAATCAATGTTAATGGAGGTGCAATGGCCATTGGCCATCCACTTGGTGCAACAGGTGCCCGTTGTGTTGCCACTCTTTTGCACGAGATGAAGCGTCGGGGAAAAGACTGCCGCTATGGAGTGATCTCAATGTGCATAGGCACAGGGATGGGTGCAGCCGCTGTTTTTGAAAGGGGGGACCACACTGATGAACTCTGCAATGCTCGCAAGGTTGACTCCCTCAATTTTTTATCCAAGGATGCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

461

Amino Acids

48.48

Weight (kDa)

7.03

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	52 - 306	6.2e-78	Thiolase, N-terminal domain
Thiolase_C	PF02803	315 - 437	3.3e-48	Thiolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04710 AT2G33150
fragaria_vesca	FvH4_4g00310
malus_domestica	MD04G1003800.v1.1
prunus_persica	Prupe.1G003300_v2.0.a1 Prupe.1G003300_v2.0.a1
pyrus_communis	pycom04g00390
rosa_chinensis	RchiOBHm_Chr4g0385141 RchiOBHm_Chr4g0415491 RchiOBHm_Chr6g0275511
rosa_laevigata	RLG00000005750 RLG00000010254
rosa_multiflora	Rmu_sc0003086.1_g000005 Rmu_sc0008734.1_g000018 Rmu_sc0010556.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010730 Rroxscaffold_1G00018720 Rroxscaffold_1G00054220 Rroxscaffold_3G00240070 Rroxscaffold_5G00333060 Rroxscaffold_5G00355890 Rroxscaffold_6G00390920
rosa_rugosa	Rorug03G0299900
rosa_samantha	Rh1BG085600 Rh2BG386800 Rh2BG500100 Rh2DG511300 Rh4AG003100 Rh4BG002500 Rh4BG187100 Rh4CG003300 Rh4DG002800 Rh5AG250800 Rh5AG295600 Rh5AG385400 Rh5AG466200 Rh5BG246000 Rh5DG254500 Rh6DG201600 Rh7CG178800 Rh7CG381300 Rh7DG359400
rosa_wichuraiana	Rw3G018530 Rw4G000620 Rw7G039000 Rw7G041060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1193
AccB7I	CCANNNNNTGG	2 cut(s)	749, 947
AccII	CGCG	2 cut(s)	92, 201
AciI	CCGC	5 cut(s)	90, 105, 201, 1249, 1296
AclWI	GGATC	6 cut(s)	334, 599, 734, 977, 990, 1124
AcoI	YGGCCR	2 cut(s)	1164, 1171
AcsI	RAATTY	1 cut(s)	936
AcuI	CTGAAG	1 cut(s)	845
AdeI	CACNNNGTG	1 cut(s)	1184
AfiI	CCNNNNNNNGG	3 cut(s)	129, 749, 947
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	5 cut(s)	211, 428, 560, 630, 1307
AjuI	GAANNNNNNNTTGG	2 cut(s)	921, 953
AlwI	GGATC	6 cut(s)	334, 599, 734, 977, 990, 1124
AlwNI	CAGNNNCTG	4 cut(s)	437, 680, 1013, 1298
AoxI	GGCC	4 cut(s)	192, 1003, 1164, 1171
ApoI	RAATTY	1 cut(s)	936
AspS9I	GGNCC	4 cut(s)	811, 849, 1004, 1315
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	2 cut(s)	586, 764
AsuII	TTCGAA	1 cut(s)	793
AsuNHI	GCTAGC	1 cut(s)	338
AvaII	GGWCC	3 cut(s)	811, 849, 1315
BaeGI	GKGCMC	1 cut(s)	1198
BalI	TGGCCA	2 cut(s)	1166, 1173
BamHI	GGATCC	1 cut(s)	982
BanI	GGYRCC	1 cut(s)	1193
BauI	CACGAG	1 cut(s)	1220
BccI	CCATC	7 cut(s)	346, 779, 839, 878, 998, 1182, 1279
BceAI	ACGGC	1 cut(s)	1095
BciVI	GTATCC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	324
BfaI	CTAG	4 cut(s)	339, 815, 870, 1121
BfmI	CTRYAG	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	3 cut(s)	811, 849, 1315
BmgT120I	GGNCC	4 cut(s)	811, 849, 1004, 1315
BmiI	GGNNCC	6 cut(s)	310, 321, 850, 984, 1195, 1316
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	1366
BmtI	GCTAGC	1 cut(s)	342
BplI	GAGNNNNNCTC	2 cut(s)	885, 917
BpmI	CTGGAG	1 cut(s)	912
Bpu14I	TTCGAA	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	537
BsaJI	CCNNGG	1 cut(s)	1371
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 749, 947
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	2 cut(s)	754, 1022
Bse3DI	GCAATG	2 cut(s)	1167, 1342
Bse8I	GATNNNNATC	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	1371
BseGI	GGATG	6 cut(s)	154, 357, 538, 1174, 1290, 1381
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	3 cut(s)	129, 749, 947
BseMI	GCAATG	2 cut(s)	1167, 1342
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	2 cut(s)	754, 1022
BseSI	GKGCMC	1 cut(s)	1198
BseYI	CCCAGC	3 cut(s)	107, 488, 1006
BsgI	GTGCAG	1 cut(s)	1311
Bsh1236I	CGCG	2 cut(s)	92, 201
BshFI	GGCC	4 cut(s)	194, 1005, 1166, 1173
BshNI	GGYRCC	1 cut(s)	1193
BsiSI	CCGG	2 cut(s)	324, 389
BslFI	GGGAC	2 cut(s)	862, 1328
BslI	CCNNNNNNNGG	3 cut(s)	129, 749, 947
BsmFI	GGGAC	2 cut(s)	862, 1328
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	4 cut(s)	194, 1005, 1166, 1173
Bsp119I	TTCGAA	1 cut(s)	793
Bsp1286I	GDGCHC	1 cut(s)	1198
BspACI	CCGC	5 cut(s)	90, 105, 201, 1249, 1296
BspANI	GGCC	4 cut(s)	194, 1005, 1166, 1173
BspCNI	CTCAG	1 cut(s)	611
BspFNI	CGCG	2 cut(s)	92, 201
BspLI	GGNNCC	6 cut(s)	310, 321, 850, 984, 1195, 1316
BspMAI	CTGCAG	1 cut(s)	655
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	6 cut(s)	334, 599, 734, 977, 990, 1124
BspT104I	TTCGAA	1 cut(s)	793
BspT107I	GGYRCC	1 cut(s)	1193
BsrDI	GCAATG	2 cut(s)	1167, 1342
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	754, 1022
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	1371
BssSI	CACGAG	1 cut(s)	1220
BssT1I	CCWWGG	1 cut(s)	1371
Bst2BI	CACGAG	1 cut(s)	1220
Bst4CI	ACNGT	2 cut(s)	385, 400
Bst6I	CTCTTC	2 cut(s)	85, 905
BstAPI	GCANNNNNTGC	2 cut(s)	680, 1193
BstBI	TTCGAA	1 cut(s)	793
BstC8I	GCNNGC	3 cut(s)	340, 370, 1342
BstDEI	CTNAG	1 cut(s)	598
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	6 cut(s)	154, 357, 538, 1174, 1290, 1381
BstFNI	CGCG	2 cut(s)	92, 201
BstMWI	GCNNNNNNNGC	9 cut(s)	104, 125, 365, 443, 680, 686, 1034, 1193, 1341
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	1 cut(s)	1198
BstUI	CGCG	2 cut(s)	92, 201
BstX2I	RGATCY	3 cut(s)	326, 552, 982
BstXI	CCANNNNNNTGG	2 cut(s)	522, 1181
BstYI	RGATCY	3 cut(s)	326, 552, 982
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	4 cut(s)	194, 1005, 1166, 1173
BtsCI	GGATG	6 cut(s)	154, 357, 538, 1174, 1290, 1381
BtsI	GCAGTG	2 cut(s)	261, 855
BtsIMutI	CAGTG	3 cut(s)	261, 855, 1320
Cac8I	GCNNGC	3 cut(s)	340, 370, 1342
CaiI	CAGNNNCTG	4 cut(s)	437, 680, 1013, 1298
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	4 cut(s)	811, 849, 1004, 1315
CseI	GACGC	2 cut(s)	81, 1220
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	5 cut(s)	99, 221, 502, 522, 994
DdeI	CTNAG	1 cut(s)	598
DraI	TTTAAA	1 cut(s)	703
DraIII	CACNNNGTG	1 cut(s)	1184
EaeI	YGGCCR	2 cut(s)	1164, 1171
Eam1104I	CTCTTC	2 cut(s)	85, 905
EarI	CTCTTC	2 cut(s)	85, 905
Eco130I	CCWWGG	1 cut(s)	1371
Eco47I	GGWCC	3 cut(s)	811, 849, 1315
Eco57I	CTGAAG	1 cut(s)	845
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	1371
ErhI	CCWWGG	1 cut(s)	1371
FaeI	CATG	5 cut(s)	102, 224, 505, 525, 997
FaqI	GGGAC	2 cut(s)	862, 1328
FatI	CATG	5 cut(s)	98, 220, 501, 521, 993
FokI	GGATG	5 cut(s)	161, 364, 545, 1161, 1297
FspBI	CTAG	4 cut(s)	339, 815, 870, 1121
GsaI	CCCAGC	3 cut(s)	111, 492, 1010
GsuI	CTGGAG	1 cut(s)	912
HaeIII	GGCC	4 cut(s)	194, 1005, 1166, 1173
HapII	CCGG	2 cut(s)	324, 389
HgaI	GACGC	2 cut(s)	81, 1220
Hin1II	CATG	5 cut(s)	102, 224, 505, 525, 997
HincII	GTYRAC	2 cut(s)	658, 1351
HindII	GTYRAC	2 cut(s)	658, 1351
HinfI	GANTC	6 cut(s)	77, 277, 497, 659, 790, 1352
HpaII	CCGG	2 cut(s)	324, 389
HphI	GGTGA	2 cut(s)	586, 764
Hpy166II	GTNNAC	3 cut(s)	403, 658, 1351
Hpy188I	TCNGA	4 cut(s)	47, 276, 601, 811
Hpy188III	TCNNGA	3 cut(s)	904, 958, 1133
Hpy8I	GTNNAC	3 cut(s)	403, 658, 1351
Hpy99I	CGWCG	3 cut(s)	77, 97, 1236
HpyAV	CCTTC	4 cut(s)	19, 60, 521, 587
HpyCH4III	ACNGT	2 cut(s)	385, 400
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	9 cut(s)	104, 125, 365, 443, 680, 686, 1034, 1193, 1341
HpyF3I	CTNAG	1 cut(s)	598
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	102, 224, 505, 525, 997
LmnI	GCTCC	4 cut(s)	325, 485, 637, 893
LweI	GCATC	1 cut(s)	1366
MaeI	CTAG	4 cut(s)	339, 815, 870, 1121
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	766, 1112
MboII	GAAGA	9 cut(s)	45, 48, 51, 54, 57, 72, 224, 572, 922
MflI	RGATCY	3 cut(s)	326, 552, 982
MhlI	GDGCHC	1 cut(s)	1198
MlsI	TGGCCA	2 cut(s)	1166, 1173
MluCI	AATT	8 cut(s)	571, 711, 865, 936, 942, 1017, 1097, 1360
MluNI	TGGCCA	2 cut(s)	1166, 1173
MlyI	GAGTC	3 cut(s)	71, 653, 1346
MmeI	TCCRAC	3 cut(s)	70, 474, 789
MnlI	CCTC	5 cut(s)	53, 607, 1075, 1148, 1367
Mox20I	TGGCCA	2 cut(s)	1166, 1173
MscI	TGGCCA	2 cut(s)	1166, 1173
MseI	TTAA	4 cut(s)	537, 702, 837, 1149
MslI	CAYNNNNRTG	3 cut(s)	225, 1283, 1323
Msp20I	TGGCCA	2 cut(s)	1166, 1173
MspA1I	CMGCKG	5 cut(s)	107, 677, 1010, 1040, 1298
MspI	CCGG	2 cut(s)	324, 389
MspR9I	CCNGG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	350
MvnI	CGCG	2 cut(s)	92, 201
MwoI	GCNNNNNNNGC	9 cut(s)	104, 125, 365, 443, 680, 686, 1034, 1193, 1341
NciI	CCSGG	1 cut(s)	324
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	5 cut(s)	102, 224, 505, 525, 997
NlaIV	GGNNCC	6 cut(s)	310, 321, 850, 984, 1195, 1316
NspI	RCATGY	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	793
PctI	GAATGC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	277, 497, 790
PflMI	CCANNNNNTGG	2 cut(s)	749, 947
PfoI	TCCNGGA	1 cut(s)	322
PleI	GAGTC	3 cut(s)	71, 653, 1346
PpsI	GAGTC	3 cut(s)	71, 653, 1346
PspFI	CCCAGC	3 cut(s)	107, 488, 1006
PspN4I	GGNNCC	6 cut(s)	310, 321, 850, 984, 1195, 1316
PspPI	GGNCC	4 cut(s)	811, 849, 1004, 1315
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	4 cut(s)	437, 680, 1013, 1298
PsuI	RGATCY	3 cut(s)	326, 552, 982
PvuII	CAGCTG	3 cut(s)	677, 1010, 1040
RseI	CAYNNNNRTG	3 cut(s)	225, 1283, 1323
SaqAI	TTAA	4 cut(s)	537, 702, 837, 1149
Sau96I	GGNCC	4 cut(s)	811, 849, 1004, 1315
SchI	GAGTC	3 cut(s)	71, 653, 1346
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	1198
SfaNI	GCATC	1 cut(s)	1366
SfcI	CTRYAG	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	793
SinI	GGWCC	3 cut(s)	811, 849, 1315
SmiMI	CAYNNNNRTG	3 cut(s)	225, 1283, 1323
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	8 cut(s)	571, 711, 865, 936, 942, 1017, 1097, 1360
SsiI	CCGC	5 cut(s)	90, 105, 201, 1249, 1296
SspMI	CTAG	4 cut(s)	339, 815, 870, 1121
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	1371
TaaI	ACNGT	2 cut(s)	385, 400
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	793
TasI	AATT	8 cut(s)	571, 711, 865, 936, 942, 1017, 1097, 1360
TauI	GCSGC	3 cut(s)	107, 1251, 1298
TfiI	GAWTC	3 cut(s)	277, 497, 790
Tru1I	TTAA	4 cut(s)	537, 702, 837, 1149
Tru9I	TTAA	4 cut(s)	537, 702, 837, 1149
TscAI	CASTG	3 cut(s)	261, 862, 1327
TspDTI	ATGAA	4 cut(s)	723, 923, 1241, 1341
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	3 cut(s)	261, 862, 1327
Van91I	CCANNNNNTGG	2 cut(s)	749, 947
VpaK11BI	GGWCC	3 cut(s)	811, 849, 1315
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	936
XceI	RCATGY	1 cut(s)	102
XspI	CTAG	4 cut(s)	339, 815, 870, 1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.