RchiOBHm_Chr6g0275511

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001874
Physical Location & Seq
Reverse (-)
37364127 .. 37369022
4896 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24718

Sequence Viewer

Length: 162 bp
ATGGGGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGATCAGGCTGCAGTTGACTCTCATAGAAAGGCAATTGTTGTTATTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGGTAACTATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

53

Amino Acids

5.79

Weight (kDa)

6.7

Isoelectric Point (pI)

28.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 1 - 50 1.4e-14 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 65, 104
BbvI GCAGC 2 cut(s) 52, 91
BfaI CTAG 1 cut(s) 160
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 2 cut(s) 66, 105
BlsI GCNGC 2 cut(s) 67, 106
BsaJI CCNNGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 52, 91
Bsp143I GATC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 26
BspMAI CTGCAG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 13
BstEII GGTNACC 1 cut(s) 7
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstPI GGTNACC 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 52, 91
CviJI RGCY 1 cut(s) 65
CviKI_1 RGCY 1 cut(s) 65
DdeI CTNAG 1 cut(s) 13
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
DraI TTTAAA 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 144
Eco91I GGTNACC 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaiI YATR 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 66, 105
Fsp4HI GCNGC 2 cut(s) 66, 105
FspBI CTAG 1 cut(s) 160
GluI GCNGC 2 cut(s) 66, 105
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 13
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 35, 47, 93, 147
Lsp1109I GCAGC 2 cut(s) 52, 91
MaeI CTAG 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 7, 148
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MfeI CAATTG 1 cut(s) 90
MluCI AATT 2 cut(s) 90, 126
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 1 cut(s) 22
MseI TTAA 1 cut(s) 117
MunI CAATTG 1 cut(s) 90
NdeII GATC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 67, 106
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PspEI GGTNACC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 70
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 66, 105
Sau3AI GATC 1 cut(s) 58
SchI GAGTC 1 cut(s) 68
SetI ASST 2 cut(s) 14, 150
SfcI CTRYAG 1 cut(s) 66
SgeI CNNG 7 cut(s) 57, 62, 68, 74, 120, 146, 157
Sse9I AATT 2 cut(s) 90, 126
SspMI CTAG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 40
TasI AATT 2 cut(s) 90, 126
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 2 cut(s) 65, 104
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 138
XspI CTAG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.