Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001874

Physical Location & Seq

Genomic Coordinates Forward (+)

73577335 .. 73591299

Gene Structure 13965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG511300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGACATTGGTAAAGATCTTTAAACAAACCCATAATTGCCTTCTTCCTATGGGGGTCACCTCAGAAAATGTTGCTCATTGTTTTACTGTTTCAAGGCAGGAGCAAGATAAGGCTGCAGTTGACTCTCATAGAAAGGCATTTGTTGTTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGGTGCTAGAGTCGAGGGAGGCTGAGGGTCCAAGTGCAGCAGTGCACTCCCCTCAAGCATGGAGTGCACGATGGCCTGGATATGTCTTTGACAAGCTGTTGGTTGTTTGCTTGAGCAGGATTGATGAGAATGATTCAGTAGCTATGATGAGGACTACTGAGGAAGCCTTGGAAACACAGAAAAATTGCAAAAACCATCATTTGAGATATCTGGAAAACTTGCTGCTGAAACCATTAGATTCAGGGGAAGAAGCTGACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

151

Amino Acids

16.96

Weight (kDa)

6.06

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	15 - 68	8.9e-15	Thiolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04710 AT2G33150
fragaria_vesca	FvH4_4g00310
malus_domestica	MD04G1003800.v1.1
prunus_persica	Prupe.1G003300_v2.0.a1 Prupe.1G003300_v2.0.a1
pyrus_communis	pycom04g00390
rosa_chinensis	RchiOBHm_Chr4g0385141 RchiOBHm_Chr4g0415491 RchiOBHm_Chr6g0275511
rosa_laevigata	RLG00000005750 RLG00000010254
rosa_multiflora	Rmu_sc0003086.1_g000005 Rmu_sc0008734.1_g000018 Rmu_sc0010556.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010730 Rroxscaffold_1G00018720 Rroxscaffold_1G00054220 Rroxscaffold_3G00240070 Rroxscaffold_5G00333060 Rroxscaffold_5G00355890 Rroxscaffold_6G00390920
rosa_rugosa	Rorug03G0299900
rosa_samantha	Rh1BG085600 Rh2BG386800 Rh2BG500100 Rh2DG511300 Rh4AG003100 Rh4BG002500 Rh4BG187100 Rh4CG003300 Rh4DG002800 Rh5AG250800 Rh5AG295600 Rh5AG385400 Rh5AG466200 Rh5BG246000 Rh5DG254500 Rh6DG201600 Rh7CG178800 Rh7CG381300 Rh7DG359400
rosa_wichuraiana	Rw3G018530 Rw4G000620 Rw7G039000 Rw7G041060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	93
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	3 cut(s)	289, 335, 446
AluI	AGCT	3 cut(s)	289, 335, 446
Alw21I	GWGCWC	2 cut(s)	240, 262
Alw44I	GTGCAC	2 cut(s)	236, 258
AoxI	GGCC	1 cut(s)	266
ApaLI	GTGCAC	2 cut(s)	236, 258
ApeKI	GCWGC	4 cut(s)	113, 152, 230, 415
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	2 cut(s)	240, 262
Bbv12I	GWGCWC	2 cut(s)	240, 262
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	100, 139, 242, 402
BccI	CCATC	2 cut(s)	258, 396
BciT130I	CCWGG	1 cut(s)	270
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	114
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	4 cut(s)	114, 153, 231, 416
BlsI	GCNGC	4 cut(s)	115, 154, 232, 417
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	231, 325
BsaJI	CCNNGG	2 cut(s)	192, 360
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	192, 360
BseMII	CTCAG	3 cut(s)	75, 207, 342
BseSI	GKGCMC	2 cut(s)	240, 262
BseXI	GCAGC	4 cut(s)	100, 139, 242, 402
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	240, 262
BsnI	GGCC	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	240, 262
Bsp143I	GATC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	3 cut(s)	74, 208, 343
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	192, 360
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	192, 360
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstDEI	CTNAG	3 cut(s)	61, 216, 351
BstEII	GGTNACC	1 cut(s)	55
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	270
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	2 cut(s)	240, 262
BstV1I	GCAGC	4 cut(s)	100, 139, 242, 402
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	1 cut(s)	252
CviJI	RGCY	7 cut(s)	113, 215, 268, 289, 335, 359, 446
CviKI_1	RGCY	7 cut(s)	113, 215, 268, 289, 335, 359, 446
DdeI	CTNAG	3 cut(s)	61, 216, 351
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
DraI	TTTAAA	2 cut(s)	22, 166
Eco130I	CCWWGG	2 cut(s)	192, 360
Eco32I	GATATC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	268
EcoRV	GATATC	1 cut(s)	401
EcoT14I	CCWWGG	2 cut(s)	192, 360
ErhI	CCWWGG	2 cut(s)	192, 360
FaeI	CATG	1 cut(s)	255
FaiI	YATR	6 cut(s)	33, 50, 129, 253, 276, 338
FatI	CATG	1 cut(s)	251
Fnu4HI	GCNGC	4 cut(s)	114, 153, 231, 416
Fsp4HI	GCNGC	4 cut(s)	114, 153, 231, 416
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	4 cut(s)	114, 153, 231, 416
HaeIII	GGCC	1 cut(s)	268
Hin1II	CATG	1 cut(s)	255
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	4 cut(s)	122, 203, 326, 431
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	3 cut(s)	121, 238, 260
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	3 cut(s)	121, 238, 260
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	5 cut(s)	116, 230, 238, 260, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	3 cut(s)	61, 216, 351
Hsp92II	CATG	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	83, 141, 195, 255, 282, 295, 389, 420
Lsp1109I	GCAGC	4 cut(s)	100, 139, 242, 402
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	55, 145
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	2 cut(s)	35, 452
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	2 cut(s)	240, 262
MluCI	AATT	3 cut(s)	34, 174, 376
MlyI	GAGTC	2 cut(s)	116, 212
MnlI	CCTC	7 cut(s)	70, 201, 205, 211, 255, 336, 346
MseI	TTAA	2 cut(s)	21, 165
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	1 cut(s)	255
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	326, 431
PkrI	GCNGC	4 cut(s)	115, 154, 232, 417
PleI	GAGTC	2 cut(s)	116, 211
PpsI	GAGTC	2 cut(s)	116, 211
Psp6I	CCWGG	1 cut(s)	268
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	21, 165
SatI	GCNGC	4 cut(s)	114, 153, 231, 416
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	2 cut(s)	116, 212
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	240, 262
SetI	ASST	5 cut(s)	62, 198, 291, 337, 448
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	246, 304
SmoI	CTYRAG	2 cut(s)	246, 304
Sse9I	AATT	3 cut(s)	34, 174, 376
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	2 cut(s)	192, 360
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	206
TasI	AATT	3 cut(s)	34, 174, 376
TfiI	GAWTC	2 cut(s)	326, 431
Tru1I	TTAA	2 cut(s)	21, 165
Tru9I	TTAA	2 cut(s)	21, 165
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	113, 152, 230, 415
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	240
VneI	GTGCAC	2 cut(s)	236, 258
VpaK11BI	GGWCC	1 cut(s)	221
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.