SNF2 domain-containing protein CLASSY
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1669 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1781 |
| Acc36I | ACCTGC | 1 cut(s) | 1669 |
| AciI | CCGC | 4 cut(s) | 64, 2127, 2786, 3961 |
| AclI | AACGTT | 1 cut(s) | 3529 |
| AcsI | RAATTY | 8 cut(s) | 1419, 1479, 1606, 2018, 2327, 3247, 3513, 3794 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 36, 1370, 1641, 2281, 2485, 2600 |
| AflII | CTTAAG | 1 cut(s) | 3563 |
| AflIII | ACRYGT | 3 cut(s) | 204, 464, 3447 |
| AhlI | ACTAGT | 1 cut(s) | 1912 |
| AjiI | CACGTC | 1 cut(s) | 3198 |
| AjnI | CCWGG | 6 cut(s) | 622, 2449, 3013, 3141, 3349, 3727 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3233, 3265 |
| AleI | CACNNNNGTG | 1 cut(s) | 4136 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3009, 3041 |
| Alw21I | GWGCWC | 4 cut(s) | 530, 1177, 1339, 2541 |
| Alw26I | GTCTC | 7 cut(s) | 71, 1059, 1361, 2558, 3484, 3505, 3712 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 623, 650 |
| Ama87I | CYCGRG | 4 cut(s) | 901, 2594, 2885, 3761 |
| AoxI | GGCC | 4 cut(s) | 969, 1997, 3011, 3816 |
| ApeKI | GCWGC | 7 cut(s) | 40, 1147, 2183, 2355, 2358, 3391, 3507 |
| ApoI | RAATTY | 8 cut(s) | 1419, 1479, 1606, 2018, 2327, 3247, 3513, 3794 |
| AseI | ATTAAT | 2 cut(s) | 1791, 3785 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 679, 3137 |
| AspLEI | GCGC | 1 cut(s) | 2791 |
| AspS9I | GGNCC | 4 cut(s) | 284, 1627, 2598, 4007 |
| AsuC2I | CCSGG | 3 cut(s) | 31, 2595, 2596 |
| AsuHPI | GGTGA | 9 cut(s) | 103, 752, 969, 2034, 2468, 2860, 2965, 3649, 3895 |
| AsuII | TTCGAA | 1 cut(s) | 4148 |
| AvaI | CYCGRG | 4 cut(s) | 901, 2594, 2885, 3761 |
| AvaII | GGWCC | 4 cut(s) | 284, 1627, 2598, 4007 |
| AxyI | CCTNAGG | 1 cut(s) | 4002 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1269, 1302 |
| BamHI | GGATCC | 1 cut(s) | 844 |
| BanII | GRGCYC | 3 cut(s) | 530, 1339, 2541 |
| BbsI | GAAGAC | 5 cut(s) | 38, 828, 873, 1935, 2312 |
| Bbv12I | GWGCWC | 4 cut(s) | 530, 1177, 1339, 2541 |
| BbvI | GCAGC | 7 cut(s) | 52, 1159, 2195, 2367, 2370, 3378, 3494 |
| BceAI | ACGGC | 3 cut(s) | 131, 3769, 3921 |
| BciT130I | CCWGG | 6 cut(s) | 624, 2451, 3015, 3143, 3351, 3729 |
| BciVI | GTATCC | 2 cut(s) | 405, 2481 |
| BclI | TGATCA | 1 cut(s) | 2670 |
| BcnI | CCSGG | 3 cut(s) | 31, 2595, 2596 |
| BcoDI | GTCTC | 7 cut(s) | 71, 1059, 1361, 2558, 3484, 3505, 3712 |
| BcuI | ACTAGT | 1 cut(s) | 1912 |
| BfaI | CTAG | 9 cut(s) | 246, 297, 669, 1041, 1056, 1913, 2096, 3407, 3497 |
| BfmI | CTRYAG | 5 cut(s) | 81, 1428, 1662, 3392, 3912 |
| BfoI | RGCGCY | 1 cut(s) | 2792 |
| BfrI | CTTAAG | 1 cut(s) | 3563 |
| BfuAI | ACCTGC | 1 cut(s) | 1669 |
| BfuI | GTATCC | 2 cut(s) | 405, 2481 |
| BglII | AGATCT | 1 cut(s) | 259 |
| BisI | GCNGC | 9 cut(s) | 41, 1148, 2128, 2184, 2356, 2359, 2787, 3392, 3508 |
| BlsI | GCNGC | 9 cut(s) | 42, 1149, 2129, 2185, 2357, 2360, 2788, 3393, 3509 |
| BmcAI | AGTACT | 1 cut(s) | 4016 |
| Bme1390I | CCNGG | 9 cut(s) | 31, 624, 2451, 2595, 2596, 3015, 3143, 3351, 3729 |
| Bme18I | GGWCC | 4 cut(s) | 284, 1627, 2598, 4007 |
| BmeT110I | CYCGRG | 4 cut(s) | 901, 2594, 2885, 3761 |
| BmgBI | CACGTC | 1 cut(s) | 3198 |
| BmgT120I | GGNCC | 4 cut(s) | 284, 1627, 2598, 4007 |
| BmiI | GGNNCC | 6 cut(s) | 286, 846, 2034, 2599, 3053, 4008 |
| BmrFI | CCNGG | 9 cut(s) | 31, 624, 2451, 2595, 2596, 3015, 3143, 3351, 3729 |
| BmrI | ACTGGG | 1 cut(s) | 2778 |
| BmsI | GCATC | 7 cut(s) | 462, 1966, 2374, 2564, 2586, 2793, 3884 |
| BmuI | ACTGGG | 1 cut(s) | 2778 |
| BpiI | GAAGAC | 5 cut(s) | 38, 828, 873, 1935, 2312 |
| BpmI | CTGGAG | 5 cut(s) | 1353, 1761, 2163, 3164, 3206 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3387 |
| Bpu14I | TTCGAA | 1 cut(s) | 4148 |
| BpuEI | CTTGAG | 7 cut(s) | 177, 736, 982, 1923, 2246, 2525, 3191 |
| BpuMI | CCSGG | 3 cut(s) | 31, 2595, 2596 |
| Bsa29I | ATCGAT | 1 cut(s) | 2064 |
| BsaBI | GATNNNNATC | 3 cut(s) | 504, 1753, 3585 |
| BsaI | GGTCTC | 3 cut(s) | 2558, 3484, 3712 |
| BsaJI | CCNNGG | 9 cut(s) | 622, 2449, 2450, 2594, 3047, 3271, 3349, 3728, 3813 |
| BsaWI | WCCGGW | 4 cut(s) | 88, 2567, 2600, 3432 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 36, 1370, 1641, 2281, 2485, 2600 |
| Bse118I | RCCGGY | 1 cut(s) | 2516 |
| Bse1I | ACTGG | 4 cut(s) | 972, 1336, 2666, 2773 |
| Bse21I | CCTNAGG | 1 cut(s) | 4002 |
| Bse3DI | GCAATG | 3 cut(s) | 1162, 2673, 3160 |
| Bse8I | GATNNNNATC | 3 cut(s) | 504, 1753, 3585 |
| BseBI | CCWGG | 6 cut(s) | 624, 2451, 3015, 3143, 3351, 3729 |
| BseCI | ATCGAT | 1 cut(s) | 2064 |
| BseDI | CCNNGG | 9 cut(s) | 622, 2449, 2450, 2594, 3047, 3271, 3349, 3728, 3813 |
| BseJI | GATNNNNATC | 3 cut(s) | 504, 1753, 3585 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 36, 1370, 1641, 2281, 2485, 2600 |
| BseMI | GCAATG | 3 cut(s) | 1162, 2673, 3160 |
| BseNI | ACTGG | 4 cut(s) | 972, 1336, 2666, 2773 |
| BseRI | GAGGAG | 7 cut(s) | 177, 180, 283, 889, 2045, 2723, 3412 |
| BseXI | GCAGC | 7 cut(s) | 52, 1159, 2195, 2367, 2370, 3378, 3494 |
| BseYI | CCCAGC | 2 cut(s) | 287, 2791 |
| BshFI | GGCC | 4 cut(s) | 971, 1999, 3013, 3818 |
| BshVI | ATCGAT | 1 cut(s) | 2064 |
| BsiHKAI | GWGCWC | 4 cut(s) | 530, 1177, 1339, 2541 |
| BsiHKCI | CYCGRG | 4 cut(s) | 901, 2594, 2885, 3761 |
| BsiSI | CCGG | 7 cut(s) | 31, 89, 2517, 2568, 2595, 2601, 3433 |
| BslFI | GGGAC | 8 cut(s) | 13, 270, 605, 2611, 2808, 3177, 4009, 4020 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 36, 1370, 1641, 2281, 2485, 2600 |
| BsmAI | GTCTC | 7 cut(s) | 71, 1059, 1361, 2558, 3484, 3505, 3712 |
| BsmFI | GGGAC | 8 cut(s) | 13, 270, 605, 2611, 2808, 3177, 4009, 4020 |
| BsmI | GAATGC | 4 cut(s) | 2733, 2818, 3330, 4144 |
| BsnI | GGCC | 4 cut(s) | 971, 1999, 3013, 3818 |
| Bso31I | GGTCTC | 3 cut(s) | 2558, 3484, 3712 |
| BsoBI | CYCGRG | 4 cut(s) | 901, 2594, 2885, 3761 |
| Bsp119I | TTCGAA | 1 cut(s) | 4148 |
| Bsp1286I | GDGCHC | 4 cut(s) | 530, 1177, 1339, 2541 |
| Bsp1407I | TGTACA | 3 cut(s) | 1164, 1447, 3744 |
| BspACI | CCGC | 4 cut(s) | 64, 2127, 2786, 3961 |
| BspANI | GGCC | 4 cut(s) | 971, 1999, 3013, 3818 |
| BspDI | ATCGAT | 1 cut(s) | 2064 |
| BspLI | GGNNCC | 6 cut(s) | 286, 846, 2034, 2599, 3053, 4008 |
| BspMAI | CTGCAG | 3 cut(s) | 1666, 3396, 3916 |
| BspMI | ACCTGC | 1 cut(s) | 1669 |
| BspQI | GCTCTTC | 5 cut(s) | 535, 670, 1455, 2870, 3276 |
| BspT104I | TTCGAA | 1 cut(s) | 4148 |
| BspTI | CTTAAG | 1 cut(s) | 3563 |
| BspTNI | GGTCTC | 3 cut(s) | 2558, 3484, 3712 |
| BsrDI | GCAATG | 3 cut(s) | 1162, 2673, 3160 |
| BsrFI | RCCGGY | 1 cut(s) | 2516 |
| BsrGI | TGTACA | 3 cut(s) | 1164, 1447, 3744 |
| BsrI | ACTGG | 4 cut(s) | 972, 1336, 2666, 2773 |
| BssAI | RCCGGY | 1 cut(s) | 2516 |
| BssECI | CCNNGG | 9 cut(s) | 622, 2449, 2450, 2594, 3047, 3271, 3349, 3728, 3813 |
| BssT1I | CCWWGG | 1 cut(s) | 3813 |
| Bst2UI | CCWGG | 6 cut(s) | 624, 2451, 3015, 3143, 3351, 3729 |
| BstAFI | CTTAAG | 1 cut(s) | 3563 |
| BstAUI | TGTACA | 3 cut(s) | 1164, 1447, 3744 |
| BstBI | TTCGAA | 1 cut(s) | 4148 |
| BstC8I | GCNNGC | 8 cut(s) | 38, 2634, 2686, 2690, 2916, 3555, 3847, 4026 |
| BstDSI | CCRYGG | 1 cut(s) | 3271 |
| BstH2I | RGCGCY | 1 cut(s) | 2792 |
| BstHHI | GCGC | 1 cut(s) | 2791 |
| BstMAI | GTCTC | 7 cut(s) | 71, 1059, 1361, 2558, 3484, 3505, 3712 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 3554, 3559, 4150 |
| BstNI | CCWGG | 6 cut(s) | 624, 2451, 3015, 3143, 3351, 3729 |
| BstNSI | RCATGY | 6 cut(s) | 208, 468, 2591, 3317, 3751, 4065 |
| BstSCI | CCNGG | 9 cut(s) | 29, 622, 2449, 2593, 2594, 3013, 3141, 3349, 3727 |
| BstSFI | CTRYAG | 5 cut(s) | 81, 1428, 1662, 3392, 3912 |
| BstV1I | GCAGC | 7 cut(s) | 52, 1159, 2195, 2367, 2370, 3378, 3494 |
| BstV2I | GAAGAC | 5 cut(s) | 38, 828, 873, 1935, 2312 |
| BstX2I | RGATCY | 5 cut(s) | 259, 505, 844, 2271, 2445 |
| BstYI | RGATCY | 5 cut(s) | 259, 505, 844, 2271, 2445 |
| Bsu15I | ATCGAT | 1 cut(s) | 2064 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4002 |
| BsuI | GTATCC | 2 cut(s) | 405, 2481 |
| BsuRI | GGCC | 4 cut(s) | 971, 1999, 3013, 3818 |
| BsuTUI | ATCGAT | 1 cut(s) | 2064 |
| BtgI | CCRYGG | 1 cut(s) | 3271 |
| BtrI | CACGTC | 1 cut(s) | 3198 |
| BtsI | GCAGTG | 1 cut(s) | 2817 |
| BtsIMutI | CAGTG | 7 cut(s) | 184, 739, 1177, 2248, 2563, 2673, 2817 |
| BveI | ACCTGC | 1 cut(s) | 1669 |
| Cac8I | GCNNGC | 8 cut(s) | 38, 2634, 2686, 2690, 2916, 3555, 3847, 4026 |
| CaiI | CAGNNNCTG | 2 cut(s) | 623, 650 |
| CfoI | GCGC | 1 cut(s) | 2791 |
| Cfr10I | RCCGGY | 1 cut(s) | 2516 |
| Cfr13I | GGNCC | 4 cut(s) | 284, 1627, 2598, 4007 |
| Cfr9I | CCCGGG | 1 cut(s) | 2594 |
| ClaI | ATCGAT | 1 cut(s) | 2064 |
| CseI | GACGC | 1 cut(s) | 32 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 1787, 1822, 1989, 2024, 3196, 3231, 3253, 3288 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1781 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1781 |
| Ecl136II | GAGCTC | 3 cut(s) | 528, 1337, 2539 |
| Eco130I | CCWWGG | 1 cut(s) | 3813 |
| Eco147I | AGGCCT | 1 cut(s) | 3013 |
| Eco24I | GRGCYC | 3 cut(s) | 530, 1339, 2541 |
| Eco31I | GGTCTC | 3 cut(s) | 2558, 3484, 3712 |
| Eco32I | GATATC | 1 cut(s) | 2989 |
| Eco47I | GGWCC | 4 cut(s) | 284, 1627, 2598, 4007 |
| Eco53kI | GAGCTC | 3 cut(s) | 528, 1337, 2539 |
| Eco81I | CCTNAGG | 1 cut(s) | 4002 |
| Eco88I | CYCGRG | 4 cut(s) | 901, 2594, 2885, 3761 |
| EcoICRI | GAGCTC | 3 cut(s) | 528, 1337, 2539 |
| EcoO109I | RGGNCCY | 1 cut(s) | 284 |
| EcoRI | GAATTC | 2 cut(s) | 1606, 3794 |
| EcoRII | CCWGG | 6 cut(s) | 622, 2449, 3013, 3141, 3349, 3727 |
| EcoRV | GATATC | 1 cut(s) | 2989 |
| EcoT14I | CCWWGG | 1 cut(s) | 3813 |
| EcoT22I | ATGCAT | 1 cut(s) | 2579 |
| EcoT38I | GRGCYC | 3 cut(s) | 530, 1339, 2541 |
| ErhI | CCWWGG | 1 cut(s) | 3813 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 664, 696, 997, 1029, 2625, 2657, 3925, 3957 |
| FaqI | GGGAC | 8 cut(s) | 13, 270, 605, 2611, 2808, 3177, 4009, 4020 |
| FauNDI | CATATG | 1 cut(s) | 919 |
| FbaI | TGATCA | 1 cut(s) | 2670 |
| Fnu4HI | GCNGC | 9 cut(s) | 41, 1148, 2128, 2184, 2356, 2359, 2787, 3392, 3508 |
| FriOI | GRGCYC | 3 cut(s) | 530, 1339, 2541 |
| Fsp4HI | GCNGC | 9 cut(s) | 41, 1148, 2128, 2184, 2356, 2359, 2787, 3392, 3508 |
| FspBI | CTAG | 9 cut(s) | 246, 297, 669, 1041, 1056, 1913, 2096, 3407, 3497 |
| GlaI | GCGC | 1 cut(s) | 2790 |
| GluI | GCNGC | 9 cut(s) | 41, 1148, 2128, 2184, 2356, 2359, 2787, 3392, 3508 |
| GsaI | CCCAGC | 2 cut(s) | 291, 2795 |
| GsuI | CTGGAG | 5 cut(s) | 1353, 1761, 2163, 3164, 3206 |
| HaeII | RGCGCY | 1 cut(s) | 2792 |
| HaeIII | GGCC | 4 cut(s) | 971, 1999, 3013, 3818 |
| HapII | CCGG | 7 cut(s) | 31, 89, 2517, 2568, 2595, 2601, 3433 |
| HgaI | GACGC | 1 cut(s) | 32 |
| HhaI | GCGC | 1 cut(s) | 2791 |
| Hin6I | GCGC | 1 cut(s) | 2789 |
| HinP1I | GCGC | 1 cut(s) | 2789 |
| HincII | GTYRAC | 2 cut(s) | 58, 303 |
| HindII | GTYRAC | 2 cut(s) | 58, 303 |
| HindIII | AAGCTT | 2 cut(s) | 2912, 4151 |
| HpaI | GTTAAC | 2 cut(s) | 58, 303 |
| HpaII | CCGG | 7 cut(s) | 31, 89, 2517, 2568, 2595, 2601, 3433 |
| HphI | GGTGA | 9 cut(s) | 103, 752, 969, 2034, 2468, 2860, 2965, 3649, 3895 |
| Hpy166II | GTNNAC | 9 cut(s) | 58, 303, 977, 1165, 1167, 1264, 1861, 3201, 3970 |
| Hpy8I | GTNNAC | 9 cut(s) | 58, 303, 977, 1165, 1167, 1264, 1861, 3201, 3970 |
| Hpy99I | CGWCG | 3 cut(s) | 117, 880, 3545 |
| HpyCH4IV | ACGT | 3 cut(s) | 3197, 3447, 3529 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 3554, 3559, 4150 |
| HpySE526I | ACGT | 3 cut(s) | 3197, 3447, 3529 |
| HspAI | GCGC | 1 cut(s) | 2789 |
| Ksp22I | TGATCA | 1 cut(s) | 2670 |
| KspAI | GTTAAC | 2 cut(s) | 58, 303 |
| LguI | GCTCTTC | 5 cut(s) | 535, 670, 1455, 2870, 3276 |
| Lsp1109I | GCAGC | 7 cut(s) | 52, 1159, 2195, 2367, 2370, 3378, 3494 |
| LweI | GCATC | 7 cut(s) | 462, 1966, 2374, 2564, 2586, 2793, 3884 |
| MaeI | CTAG | 9 cut(s) | 246, 297, 669, 1041, 1056, 1913, 2096, 3407, 3497 |
| MaeII | ACGT | 3 cut(s) | 3197, 3447, 3529 |
| MflI | RGATCY | 5 cut(s) | 259, 505, 844, 2271, 2445 |
| MhlI | GDGCHC | 4 cut(s) | 530, 1177, 1339, 2541 |
| MlyI | GAGTC | 9 cut(s) | 134, 662, 734, 836, 1712, 3159, 3411, 3570, 3991 |
| MmeI | TCCRAC | 3 cut(s) | 168, 916, 4107 |
| Mph1103I | ATGCAT | 1 cut(s) | 2579 |
| MroXI | GAANNNNTTC | 2 cut(s) | 679, 3137 |
| MslI | CAYNNNNRTG | 2 cut(s) | 4136, 4223 |
| MspA1I | CMGCKG | 1 cut(s) | 1925 |
| MspCI | CTTAAG | 1 cut(s) | 3563 |
| MspI | CCGG | 7 cut(s) | 31, 89, 2517, 2568, 2595, 2601, 3433 |
| MspR9I | CCNGG | 9 cut(s) | 31, 624, 2451, 2595, 2596, 3015, 3143, 3351, 3729 |
| Mva1269I | GAATGC | 4 cut(s) | 2733, 2818, 3330, 4144 |
| MvaI | CCWGG | 6 cut(s) | 624, 2451, 3015, 3143, 3351, 3729 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 3554, 3559, 4150 |
| NciI | CCSGG | 3 cut(s) | 31, 2595, 2596 |
| NdeI | CATATG | 1 cut(s) | 919 |
| NlaIV | GGNNCC | 6 cut(s) | 286, 846, 2034, 2599, 3053, 4008 |
| NmeAIII | GCCGAG | 2 cut(s) | 1176, 2762 |
| NmuCI | GTSAC | 7 cut(s) | 91, 905, 1693, 2040, 2583, 3421, 4108 |
| NsiI | ATGCAT | 1 cut(s) | 2579 |
| NspI | RCATGY | 6 cut(s) | 208, 468, 2591, 3317, 3751, 4065 |
| NspV | TTCGAA | 1 cut(s) | 4148 |
| OliI | CACNNNNGTG | 1 cut(s) | 4136 |
| PaeR7I | CTCGAG | 2 cut(s) | 901, 3761 |
| PaqCI | CACCTGC | 1 cut(s) | 1669 |
| PasI | CCCWGGG | 1 cut(s) | 2450 |
| PceI | AGGCCT | 1 cut(s) | 3013 |
| PciI | ACATGT | 2 cut(s) | 204, 464 |
| PciSI | GCTCTTC | 5 cut(s) | 535, 670, 1455, 2870, 3276 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 872, 2130, 3630, 3759 |
| PctI | GAATGC | 4 cut(s) | 2733, 2818, 3330, 4144 |
| PdmI | GAANNNNTTC | 2 cut(s) | 679, 3137 |
| PfoI | TCCNGGA | 2 cut(s) | 29, 3141 |
| PkrI | GCNGC | 9 cut(s) | 42, 1149, 2129, 2185, 2357, 2360, 2788, 3393, 3509 |
| PleI | GAGTC | 9 cut(s) | 134, 661, 733, 835, 1712, 3159, 3410, 3570, 3991 |
| PpsI | GAGTC | 9 cut(s) | 134, 661, 733, 835, 1712, 3159, 3410, 3570, 3991 |
| PpuMI | RGGWCCY | 1 cut(s) | 284 |
| PscI | ACATGT | 2 cut(s) | 204, 464 |
| PshBI | ATTAAT | 2 cut(s) | 1791, 3785 |
| Psp124BI | GAGCTC | 3 cut(s) | 530, 1339, 2541 |
| Psp1406I | AACGTT | 1 cut(s) | 3529 |
| Psp5II | RGGWCCY | 1 cut(s) | 284 |
| Psp6I | CCWGG | 6 cut(s) | 622, 2449, 3013, 3141, 3349, 3727 |
| PspFI | CCCAGC | 2 cut(s) | 287, 2791 |
| PspGI | CCWGG | 6 cut(s) | 622, 2449, 3013, 3141, 3349, 3727 |
| PspN4I | GGNNCC | 6 cut(s) | 286, 846, 2034, 2599, 3053, 4008 |
| PspPI | GGNCC | 4 cut(s) | 284, 1627, 2598, 4007 |
| PspPPI | RGGWCCY | 1 cut(s) | 284 |
| PspXI | VCTCGAGB | 2 cut(s) | 901, 3761 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 504, 536 |
| PstI | CTGCAG | 3 cut(s) | 1666, 3396, 3916 |
| PstNI | CAGNNNCTG | 2 cut(s) | 623, 650 |
| PsuI | RGATCY | 5 cut(s) | 259, 505, 844, 2271, 2445 |
| PvuII | CAGCTG | 1 cut(s) | 1925 |
| RseI | CAYNNNNRTG | 2 cut(s) | 4136, 4223 |
| SacI | GAGCTC | 3 cut(s) | 530, 1339, 2541 |
| SapI | GCTCTTC | 5 cut(s) | 535, 670, 1455, 2870, 3276 |
| SatI | GCNGC | 9 cut(s) | 41, 1148, 2128, 2184, 2356, 2359, 2787, 3392, 3508 |
| Sau96I | GGNCC | 4 cut(s) | 284, 1627, 2598, 4007 |
| ScaI | AGTACT | 1 cut(s) | 4016 |
| SchI | GAGTC | 9 cut(s) | 134, 662, 734, 836, 1712, 3159, 3411, 3570, 3991 |
| ScrFI | CCNGG | 9 cut(s) | 31, 624, 2451, 2595, 2596, 3015, 3143, 3351, 3729 |
| SduI | GDGCHC | 4 cut(s) | 530, 1177, 1339, 2541 |
| SfaNI | GCATC | 7 cut(s) | 462, 1966, 2374, 2564, 2586, 2793, 3884 |
| SfcI | CTRYAG | 5 cut(s) | 81, 1428, 1662, 3392, 3912 |
| Sfr274I | CTCGAG | 2 cut(s) | 901, 3761 |
| SfuI | TTCGAA | 1 cut(s) | 4148 |
| SinI | GGWCC | 4 cut(s) | 284, 1627, 2598, 4007 |
| SlaI | CTCGAG | 2 cut(s) | 901, 3761 |
| SmaI | CCCGGG | 1 cut(s) | 2596 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 4136, 4223 |
| SpeI | ACTAGT | 1 cut(s) | 1912 |
| SseBI | AGGCCT | 1 cut(s) | 3013 |
| SsiI | CCGC | 4 cut(s) | 64, 2127, 2786, 3961 |
| SspI | AATATT | 1 cut(s) | 1815 |
| SspMI | CTAG | 9 cut(s) | 246, 297, 669, 1041, 1056, 1913, 2096, 3407, 3497 |
| SstI | GAGCTC | 3 cut(s) | 530, 1339, 2541 |
| StuI | AGGCCT | 1 cut(s) | 3013 |
| StyD4I | CCNGG | 9 cut(s) | 29, 622, 2449, 2593, 2594, 3013, 3141, 3349, 3727 |
| StyI | CCWWGG | 1 cut(s) | 3813 |
| TaiI | ACGT | 3 cut(s) | 3200, 3450, 3532 |
| TaqI | TCGA | 9 cut(s) | 902, 2064, 2873, 3540, 3579, 3624, 3762, 3918, 4148 |
| TatI | WGTACW | 5 cut(s) | 207, 1164, 1447, 3744, 4014 |
| TauI | GCSGC | 2 cut(s) | 2130, 2789 |
| TscAI | CASTG | 7 cut(s) | 184, 739, 1184, 2255, 2563, 2673, 2824 |
| TseFI | GTSAC | 7 cut(s) | 91, 905, 1693, 2040, 2583, 3421, 4108 |
| TseI | GCWGC | 7 cut(s) | 40, 1147, 2183, 2355, 2358, 3391, 3507 |
| Tsp45I | GTSAC | 7 cut(s) | 91, 905, 1693, 2040, 2583, 3421, 4108 |
| TspMI | CCCGGG | 1 cut(s) | 2594 |
| TspRI | CASTG | 7 cut(s) | 184, 739, 1184, 2255, 2563, 2673, 2824 |
| Vha464I | CTTAAG | 1 cut(s) | 3563 |
| VpaK11BI | GGWCC | 4 cut(s) | 284, 1627, 2598, 4007 |
| VspI | ATTAAT | 2 cut(s) | 1791, 3785 |
| XapI | RAATTY | 8 cut(s) | 1419, 1479, 1606, 2018, 2327, 3247, 3513, 3794 |
| XceI | RCATGY | 6 cut(s) | 208, 468, 2591, 3317, 3751, 4065 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1351, 1642 |
| XhoI | CTCGAG | 2 cut(s) | 901, 3761 |
| XmaI | CCCGGG | 1 cut(s) | 2594 |
| XmnI | GAANNNNTTC | 2 cut(s) | 679, 3137 |
| XspI | CTAG | 9 cut(s) | 246, 297, 669, 1041, 1056, 1913, 2096, 3407, 3497 |
| ZrmI | AGTACT | 1 cut(s) | 4016 |
| Zsp2I | ATGCAT | 1 cut(s) | 2579 |