RLG00000003307

SNF2 domain-containing protein CLASSY

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
46961699 .. 46967872
6174 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003307

Sequence Viewer

Length: 4428 bp
ATGAAGATCAACAGTGGGGTGAATCCAGCCTCAAGGAGGAATAAAATGAGGAGTTCCAACCAGGCTTGTGTTTCTCATATGGGTGAGTCCAGTTCTAGGAAACAGAGTTTTGAGTGGGTTGCTGATCATTTGGAACAGAATGATGATGATTCGGAGGGTTTTTATTCTCAAGAGAGTAAAAGAAGTGGGAAACAGGGAAAGGGGGAAGGAGTTGCGGTTGGTGTAAAGAGAAAGAGGAGTTTGGGATTAGATGTGGCGGCTGATGGAAACAGATATGGTTGCAATTGGAGAGCTGTTTTGGATAATGGTGTGGAAGTTGTCGATTTGGTGGATAGTGACGATGATGATGAGGTAGTAGTTTCTAAAGGTAAAGAGGGAGGAGGAGGAGGAGGAGGAGGAGTTGATCTTGATGATGTGAGTGATGGTGAAAGTAATGAGGATGTTGATGACGTCAGTGGTAATGAGAGTGATGATGACGTTTCATCAGCAGAGGAAGAGGACAGTAGTGACGAAAGTGAGTTCTTGCTAGGGAAAGAGTCCACAGTGGAGGAAAATGATGAGGAATGTGTTTCCTCATCAGATGAAGATAGCTGTGAGGAGGGAAATGAAGAGGAGAGTGAATTGACAGAGAAGAATGAGAAAGAGAGCAAGGAGGAAAGTGTTGAGGTTGGTTTGGAGGGAAATAGAAATGCTGATGGGGATGATCTGCATTCTTCTTATGGTCATGATTTTGACGACAGCAGCAAGAAAGTAAGCAAAGGAGAAACTGTTGAGGTTGGTCTGGAAGGAAAGATAAGTGATGATCTGCATTCTTGTTCTGCTCATGATACTGATGTCAGAAATGAGCAAGTCTGGAAGGAAGAAAGTCTCGGGATTCTTCCGAAGGGAAAGATTAATGCTGATGGGGATGATCTACATTCTTCTTTTGGTCATGATATCGATGACAGAAGTGCGAAATTGGGGGAGGCAGAGAGTGTGTTGGCCGAAGGGAGAACTGGGTGCGATAGAAGTGATGATAACAATGATGGGAAAGTGTGGCAGGAAGAAATTGTTGGGGTTGGTTCGAAGGAAAACAGAAGTGGTGAGGGGTATATTCTACATTCTTCTTCTGTTCATGATATTAATGACAGAATTGAGAAATTGGGGGAGGCAGAGAGTGTGTTGGCCGAAGAGAGAATTGCGTGTGATAGAAGTGATGATAACAATGATGGGAAAGTGTGGAAGGAAGAAAGTGTTGGGGTTGGTTCGAAGGAAAACAGAAGTAGTGATGAGTGTAATCTAGATTCTTCTTCTGTTCATGATATCAATGAGAGAAGTGAGAAACTGGGAAAGGCGGGAGGTGTATCTGCTGAAGGGAAAGATGGGTGGAATAAAAGAAGAGAAGATGGCAGTGAGGGAAAAACTGGTTGTGGTTATAGCAGAAATGAAAACAATGGTAAATTGAAAGCAGAGTCCGAAACTGGTTCTGCTAGTAGATTAAAGGATGACACCAAATATAAAGGAAAAACTGGGACTGTTGGACGTAAAACTTGGTCTGGTAAATGGAATGAGGTGCATAATGAATGCAAAAAGTCCGAAGGGGATAGCTTCCTTTCTAAACAAAAGAGCACGAGGCCACCAAAACGGAAAAGGTTACCTACAGTTGCATTTGAAGCCCCAAAAGTTGAATCTCTTCCTTTGAGATTCAGTTTTTCTAAGCAGCCAACTATTCCTGAGAAGCCAGATTATGAGAGAGAAGTAGATGAACTTTTTGATGAATATAAATTTGCTATGGCATTTGATGAGAATGCTTCGACTGAATCTAAGGCCAAAGGAAATGATGATGCAAGGTCAAAGAATAAGATACATGATTTCGATGATGAGACGCATGGTGGTACTTCAGAATCTGGTTTTGATAAAGGCAGTAAACTTGATGTGCAGAGGGCTTGCAAGACGGGTGTAGAGGCTGAAGGAAACAACTTTTCAGAATCCATTAATTTACGAAAGGAAGACAATGATGATACATGTGGTGGTAGTCGTCCGGAACCGTATAAGAACAAAGAAAGGGTGAGGAAGCTTACCAACGAAAAGGGCATTACAGCACCAAAAGATTGCAATGCCTTTATGATTCTTGTAGATTCGATTTATGACAAGGGAGAAGTGTCAGGGGAACAGTTACCTCCTTCTAACGATGAATCCCCCCAGGATGAAGCTCCAAGAGATGAGCCTCTTCCAAAGTTTTTCAGGCTTGGTCATCCTCCAAGTCCTGTACCAGAGAAGTCAGCTTCTGAGATAGAACTAGAAGAACTTTTTGAACAATATGACTTTGTCCTCATGTCTGAGGGGATTGGTTCCACTGATTCTATTGTGGTTGAAACTAATCACTCAATCCCTCCCGGTAAGGAAGTTACTCAGCATATGCTTTGTAGTCAAGGGAATCATGATCTTATACTTGATGAAGAAATTGGATACATATGTCGATTCTGCCCTCATGTGCATCAGGAGATCAAGTATATTGTACCAGACTTTGCTCCAAACCCCTATGGAAAAGCTGGGAAGAGATTTTATGAAGAAGACAACCGGTCTATCCTTGATGATCTTCAGTGTAATGACCCTGACGATTCTGGCTTTAGTTCCCATGCTCATACTGAAGGCACAGTGTGGGACTTGATCCCTGGTGTGGAAAGTGATATGTACCCTCATCAGCGTGAAGGTTTTGAATTTATTTGGAGGCACTTAGCTGGTGGAATCCAGCTTGGAAAGTTGGAAAAACCTACTGCTTATGGTGGTGATGGATGCATTATATCGCATGCACCTGGAACTGGAAAGACTCGTTTGACTATAATCTTTATCCAGTCGTACATGAATTTTAACCCATCAAGCAGGCCTCTCATCGTTGCTCCACGTACCATGCTCCTTACTTGGGAAGAGGAGTTTAAGAAATGGGGTTTTGACATTCCCTTTCACAATCTTAACAATCCTGATTTCACTGGGAAAGAGGATGAAGCAGCTCGCAATCTTGTGAAGGATGGTAAAAGTTCAGAAATGATAAACTTGACCCGTATTGTGAAGCTGAAGTCCTGGGCAAAGAAAAGAAGCATCTTGGGGATTAGTTATTCACTGTTTGAGCAGGTATGTGGAGCCCCTACCAAGAAAGGAAGACATCCACTTTCTTCAAGACGAAAGTTTGAAGTTGAGCAGATGAGTGAAATCCTTCTTAAATTTCCTGGTCTCGTAGTATTTGACGAAGGGCACAATCCTCGCAATGACCAGAGTCACTCATGGAATGCTCTTTTAAAACTGAAAACAAGAAGGCGCATTATCCTCTCTGGTACTCCTTTTCAGAATAATTTTGAGGAGCTCTACAATACAGTCCGCTTGGTGAGGCCAGAATGGACCACCAATCTTACCTGTCTTGGAGCTTTTGACAAAAAGCAATGGACTTCAGGCCAAATTCGAGGCAGAGAAGGCAGAAAAAGCAATGCTGGGAGAGGCCAATTTGCGGATGATAATACAAAGCGAGCCAAGGAGGTCAGAGCTATGATTTCCCCATTTGTGCATGTTTACAAAGGCACCATACTGCAAGATAAGCTTCCCGGGTTAAGGAACTCAGTTGTTGTTCTACAGCCAACAGCTTTACAGCAGAGATATTCTGACAGGACTCGGCTGATAAAGAATCCATTCAAATATGAAAGAATAGAGGCTAAAGTAACTATCCATCCTTCTCTCTTGCTTACTGAAGAGCGCTCTATGTTTCATGAGGGTGACGAGTATTCAGGTGACTGGGAAAGGCTAACTGAAATTAAGTTAAATCCTGAATGTGGAGTCAAGGCAAGATTTGCAGTTGATCTTATTCGGCTTTGTCAAGCTATGAAGGAAAGAGTTTTGGTATTCAGTCAGTGGCTTGATCCATTGTTCTTGATAAGGGACATGCTCAAATCTCAGTTTCAGTGGGTGGAAGGAGAGGAGGTTGTGTATATGGATGGAAAATGTGATGCAAAGCAACGCCAATCCTCAATGAGTTATTTCAATGATCCATCCTCCAAAGCAAAGGCAATGTTAGCTACAACAAAAGGTTGTAATGAAGGAATAAGTTTAGTTGGAGCTTCAAGGGTTGTACTGCTTGATGTTGCATGGAACCCATCTGTCGAGAGGCAAGCTATATCCCGAGCATACCGATTGGGACAGAAAAAGATTGTCTTCATATACCATCTCCTCATGGCTGGGGCAAGAGAAGAGGACAAATACAGCCGGCAAGTTGAGAAGCATCGGTTGTCTGAATTGGTATTTTCTTGTTCGAATACAGAAGCAGATGCCAAGAAACTCCCATCTGCGGTCGCAGAGGACAAGGTTTTGGAAGAGATGGTGCAGCATGAGAAACTCAAGCATATATTCCACAAGATAACATTACTGGATGAAGCCTCATATTTGGATGAAGATTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1476

Amino Acids

164.95

Weight (kDa)

5.06

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 891 - 1107 3.2e-10 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 894 - 1219 2.1e-24 SNF2-related domain
Helicase_C PF00271 1276 - 1388 1.3e-15 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 453
Acc36I ACCTGC 1 cut(s) 3100
AccB1I GGYRCC 1 cut(s) 3551
AccIII TCCGGA 1 cut(s) 2020
AciI CCGC 6 cut(s) 215, 257, 1334, 3355, 3482, 4313
AclWI GGATC 3 cut(s) 2644, 3881, 4007
AcoI YGGCCR 2 cut(s) 981, 1164
AcsI RAATTY 5 cut(s) 1763, 2699, 2845, 3200, 3432
AcuI CTGAAG 8 cut(s) 1371, 1863, 1968, 2564, 2649, 3074, 3408, 3738
AcyI GRCGYC 1 cut(s) 450
AdeI CACNNNGTG 1 cut(s) 2640
AfaI GTAC 8 cut(s) 1876, 2250, 2499, 2675, 2840, 2887, 3313, 4098
AfeI AGCGCT 1 cut(s) 3725
AfiI CCNNNNNNNGG 9 cut(s) 36, 96, 2659, 2801, 2902, 3481, 3582, 3800, 4312
AflIII ACRYGT 1 cut(s) 2003
AgeI ACCGGT 1 cut(s) 2559
AhdI GACNNNNNGTC 1 cut(s) 2560
AjnI CCWGG 6 cut(s) 60, 2181, 2653, 2794, 3059, 3205
AjuI GAANNNNNNNTTGG 4 cut(s) 1035, 1067, 1218, 1250
Alw21I GWGCWC 2 cut(s) 1610, 3342
Alw26I GTCTC 3 cut(s) 872, 1856, 3215
AlwI GGATC 3 cut(s) 2644, 3881, 4007
AlwNI CAGNNNCTG 2 cut(s) 1886, 2267
Ama87I CYCGRG 3 cut(s) 869, 3575, 4146
Aor13HI TCCGGA 1 cut(s) 2020
Aor51HI AGCGCT 1 cut(s) 3725
AoxI GGCC 8 cut(s) 981, 1164, 1613, 1806, 2864, 3365, 3427, 3472
ApeKI GCWGC 4 cut(s) 741, 1699, 2987, 4348
ApoI RAATTY 5 cut(s) 1763, 2699, 2845, 3200, 3432
AseI ATTAAT 3 cut(s) 894, 1122, 1974
AsiGI ACCGGT 1 cut(s) 2559
Asp700I GAANNNNTTC 3 cut(s) 1671, 3192, 3659
AspLEI GCGC 2 cut(s) 3297, 3726
AspS9I GGNCC 1 cut(s) 3375
AsuC2I CCSGG 3 cut(s) 2376, 3576, 3577
AsuHPI GGTGA 9 cut(s) 31, 95, 437, 1094, 2059, 2780, 3373, 3755, 3770
AsuII TTCGAA 3 cut(s) 1064, 1247, 4277
AvaI CYCGRG 3 cut(s) 869, 3575, 4146
AvaII GGWCC 1 cut(s) 3375
BaeGI GKGCMC 1 cut(s) 3234
BaeI ACNNNNGTAYC 4 cut(s) 819, 852, 2440, 2473
BanI GGYRCC 1 cut(s) 3551
BanII GRGCYC 2 cut(s) 3124, 3342
BauI CACGAG 1 cut(s) 1609
BbsI GAAGAC 4 cut(s) 1995, 2559, 3145, 4171
Bbv12I GWGCWC 2 cut(s) 1610, 3342
BbvI GCAGC 4 cut(s) 753, 1711, 2999, 4360
BcgI CGANNNNNNTGC 2 cut(s) 3221, 3255
BciT130I CCWGG 6 cut(s) 62, 2183, 2655, 2796, 3061, 3207
BciVI GTATCC 1 cut(s) 2441
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 3 cut(s) 2376, 3576, 3577
BcoDI GTCTC 3 cut(s) 872, 1856, 3215
BfaI CTAG 5 cut(s) 96, 527, 1280, 1470, 2279
BfmI CTRYAG 2 cut(s) 1638, 3602
BfoI RGCGCY 1 cut(s) 3727
BfuAI ACCTGC 1 cut(s) 3100
BfuI GTATCC 1 cut(s) 2441
BisI GCNGC 5 cut(s) 258, 742, 1700, 2988, 4349
BlsI GCNGC 5 cut(s) 259, 743, 1701, 2989, 4350
Bme1390I CCNGG 9 cut(s) 62, 2183, 2376, 2655, 2796, 3061, 3207, 3576, 3577
Bme18I GGWCC 1 cut(s) 3375
BmeRI GACNNNNNGTC 1 cut(s) 2560
BmeT110I CYCGRG 3 cut(s) 869, 3575, 4146
BmgT120I GGNCC 1 cut(s) 3375
BmiI GGNNCC 5 cut(s) 2025, 2332, 3121, 3553, 4118
BmrFI CCNGG 9 cut(s) 62, 2183, 2376, 2655, 2796, 3061, 3207, 3576, 3577
BmrI ACTGGG 5 cut(s) 1005, 1334, 1518, 2979, 3772
BmsI GCATC 7 cut(s) 1813, 2485, 2765, 3087, 3964, 4255, 4282
BmuI ACTGGG 5 cut(s) 1005, 1334, 1518, 2979, 3772
BoxI GACNNNNGTC 1 cut(s) 3252
BpiI GAAGAC 4 cut(s) 1995, 2559, 3145, 4171
Bpu14I TTCGAA 3 cut(s) 1064, 1247, 4277
BpuEI CTTGAG 3 cut(s) 16, 153, 4346
BpuMI CCSGG 3 cut(s) 2376, 3576, 3577
Bsa29I ATCGAT 1 cut(s) 939
BsaAI YACGTR 1 cut(s) 2885
BsaHI GRCGYC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 3215
BsaJI CCNNGG 5 cut(s) 2181, 2653, 3060, 3504, 3575
BsaWI WCCGGW 2 cut(s) 2020, 2559
Bsc4I CCNNNNNNNGG 9 cut(s) 36, 96, 2659, 2801, 2902, 3481, 3582, 3800, 4312
Bse118I RCCGGY 2 cut(s) 2559, 4230
Bse3DI GCAATG 5 cut(s) 2101, 3250, 3422, 3466, 4041
BseAI TCCGGA 1 cut(s) 2020
BseBI CCWGG 6 cut(s) 62, 2183, 2655, 2796, 3061, 3207
BseCI ATCGAT 1 cut(s) 939
BseDI CCNNGG 5 cut(s) 2181, 2653, 3060, 3504, 3575
BseLI CCNNNNNNNGG 9 cut(s) 36, 96, 2659, 2801, 2902, 3481, 3582, 3800, 4312
BseMI GCAATG 5 cut(s) 2101, 3250, 3422, 3466, 4041
BseMII CTCAG 6 cut(s) 1704, 2259, 2310, 2405, 3603, 3935
BseSI GKGCMC 1 cut(s) 3234
BseXI GCAGC 4 cut(s) 753, 1711, 2999, 4360
BseYI CCCAGC 3 cut(s) 2531, 3464, 4202
BsgI GTGCAG 2 cut(s) 1937, 4367
Bsh1285I CGRYCG 1 cut(s) 4317
BshFI GGCC 8 cut(s) 983, 1166, 1615, 1808, 2866, 3367, 3429, 3474
BshNI GGYRCC 1 cut(s) 3551
BshTI ACCGGT 1 cut(s) 2559
BshVI ATCGAT 1 cut(s) 939
BsiEI CGRYCG 1 cut(s) 4317
BsiHKAI GWGCWC 2 cut(s) 1610, 3342
BsiHKCI CYCGRG 3 cut(s) 869, 3575, 4146
BsiSI CCGG 5 cut(s) 2021, 2376, 2560, 3576, 4231
BslFI GGGAC 4 cut(s) 1525, 2657, 3920, 4176
BslI CCNNNNNNNGG 9 cut(s) 36, 96, 2659, 2801, 2902, 3481, 3582, 3800, 4312
BsmAI GTCTC 3 cut(s) 872, 1856, 3215
BsmBI CGTCTC 1 cut(s) 1856
BsmFI GGGAC 4 cut(s) 1525, 2657, 3920, 4176
BsmI GAATGC 5 cut(s) 709, 808, 1568, 1792, 3271
BsnI GGCC 8 cut(s) 983, 1166, 1615, 1808, 2866, 3367, 3429, 3474
Bso31I GGTCTC 1 cut(s) 3215
BsoBI CYCGRG 3 cut(s) 869, 3575, 4146
Bsp119I TTCGAA 3 cut(s) 1064, 1247, 4277
Bsp1286I GDGCHC 4 cut(s) 1610, 3124, 3234, 3342
Bsp13I TCCGGA 1 cut(s) 2020
BspACI CCGC 6 cut(s) 215, 257, 1334, 3355, 3482, 4313
BspANI GGCC 8 cut(s) 983, 1166, 1615, 1808, 2866, 3367, 3429, 3474
BspCNI CTCAG 6 cut(s) 1705, 2260, 2311, 2404, 3602, 3934
BspDI ATCGAT 1 cut(s) 939
BspEI TCCGGA 1 cut(s) 2020
BspHI TCATGA 7 cut(s) 724, 823, 931, 1114, 1297, 2419, 3736
BspLI GGNNCC 5 cut(s) 2025, 2332, 3121, 3553, 4118
BspMI ACCTGC 1 cut(s) 3100
BspPI GGATC 3 cut(s) 2644, 3881, 4007
BspQI GCTCTTC 1 cut(s) 3714
BspT104I TTCGAA 3 cut(s) 1064, 1247, 4277
BspT107I GGYRCC 1 cut(s) 3551
BspTNI GGTCTC 1 cut(s) 3215
BsrDI GCAATG 5 cut(s) 2101, 3250, 3422, 3466, 4041
BsrFI RCCGGY 2 cut(s) 2559, 4230
BssAI RCCGGY 2 cut(s) 2559, 4230
BssECI CCNNGG 5 cut(s) 2181, 2653, 3060, 3504, 3575
BssNI GRCGYC 1 cut(s) 450
BssSI CACGAG 1 cut(s) 1609
BssT1I CCWWGG 1 cut(s) 3504
Bst2BI CACGAG 1 cut(s) 1609
Bst2UI CCWGG 6 cut(s) 62, 2183, 2655, 2796, 3061, 3207
BstACI GRCGYC 1 cut(s) 450
BstAPI GCANNNNNTGC 1 cut(s) 3818
BstBAI YACGTR 1 cut(s) 2885
BstBI TTCGAA 3 cut(s) 1064, 1247, 4277
BstC8I GCNNGC 7 cut(s) 1927, 2790, 2864, 2992, 3501, 4137, 4232
BstDEI CTNAG 9 cut(s) 1695, 1713, 1803, 2268, 2319, 2391, 2716, 3589, 3921
BstEII GGTNACC 1 cut(s) 1632
BstENI CCTNNNNNAGG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 3727
BstHHI GCGC 2 cut(s) 3297, 3726
BstMAI GTCTC 3 cut(s) 872, 1856, 3215
BstMCI CGRYCG 1 cut(s) 4317
BstMWI GCNNNNNNNGC 6 cut(s) 1652, 3447, 3456, 3568, 3818, 4040
BstNI CCWGG 6 cut(s) 62, 2183, 2655, 2796, 3061, 3207
BstNSI RCATGY 4 cut(s) 2007, 2792, 3542, 3913
BstPAI GACNNNNGTC 1 cut(s) 3252
BstPI GGTNACC 1 cut(s) 1632
BstSCI CCNGG 9 cut(s) 60, 2181, 2374, 2653, 2794, 3059, 3205, 3574, 3575
BstSFI CTRYAG 2 cut(s) 1638, 3602
BstSLI GKGCMC 1 cut(s) 3234
BstV1I GCAGC 4 cut(s) 753, 1711, 2999, 4360
BstV2I GAAGAC 4 cut(s) 1995, 2559, 3145, 4171
Bsu15I ATCGAT 1 cut(s) 939
BsuI GTATCC 1 cut(s) 2441
BsuRI GGCC 8 cut(s) 983, 1166, 1615, 1808, 2866, 3367, 3429, 3474
BsuTUI ATCGAT 1 cut(s) 939
BtsI GCAGTG 1 cut(s) 1396
BveI ACCTGC 1 cut(s) 3100
Cac8I GCNNGC 7 cut(s) 1927, 2790, 2864, 2992, 3501, 4137, 4232
CaiI CAGNNNCTG 2 cut(s) 1886, 2267
CciI TCATGA 7 cut(s) 724, 823, 931, 1114, 1297, 2419, 3736
CfoI GCGC 2 cut(s) 3297, 3726
Cfr10I RCCGGY 2 cut(s) 2559, 4230
Cfr13I GGNCC 1 cut(s) 3375
Cfr9I CCCGGG 1 cut(s) 3575
ClaI ATCGAT 1 cut(s) 939
CseI GACGC 1 cut(s) 1873
Csp6I GTAC 8 cut(s) 1875, 2249, 2498, 2674, 2839, 2886, 3312, 4097
CspAI ACCGGT 1 cut(s) 2559
CviQI GTAC 8 cut(s) 1875, 2249, 2498, 2674, 2839, 2886, 3312, 4097
DdeI CTNAG 9 cut(s) 1695, 1713, 1803, 2268, 2319, 2391, 2716, 3589, 3921
DraI TTTAAA 1 cut(s) 3276
DraIII CACNNNGTG 1 cut(s) 2640
DriI GACNNNNNGTC 1 cut(s) 2560
EaeI YGGCCR 2 cut(s) 981, 1164
Eam1105I GACNNNNNGTC 1 cut(s) 2560
Ecl136II GAGCTC 1 cut(s) 3340
Eco130I CCWWGG 1 cut(s) 3504
Eco147I AGGCCT 1 cut(s) 2866
Eco24I GRGCYC 2 cut(s) 3124, 3342
Eco31I GGTCTC 1 cut(s) 3215
Eco32I GATATC 2 cut(s) 937, 1303
Eco47I GGWCC 1 cut(s) 3375
Eco47III AGCGCT 1 cut(s) 3725
Eco53kI GAGCTC 1 cut(s) 3340
Eco57I CTGAAG 8 cut(s) 1371, 1863, 1968, 2564, 2649, 3074, 3408, 3738
Eco88I CYCGRG 3 cut(s) 869, 3575, 4146
Eco91I GGTNACC 1 cut(s) 1632
EcoICRI GAGCTC 1 cut(s) 3340
EcoNI CCTNNNNNAGG 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 1632
EcoRII CCWGG 6 cut(s) 60, 2181, 2653, 2794, 3059, 3205
EcoRV GATATC 2 cut(s) 937, 1303
EcoT14I CCWWGG 1 cut(s) 3504
EcoT22I ATGCAT 1 cut(s) 2780
EcoT38I GRGCYC 2 cut(s) 3124, 3342
ErhI CCWWGG 1 cut(s) 3504
Esp3I CGTCTC 1 cut(s) 1856
FalI AAGNNNNNCTT 4 cut(s) 3555, 3587, 4163, 4195
FaqI GGGAC 4 cut(s) 1525, 2657, 3920, 4176
FauI CCCGC 1 cut(s) 1327
FauNDI CATATG 3 cut(s) 78, 2397, 2453
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 258, 742, 1700, 2988, 4349
FriOI GRGCYC 2 cut(s) 3124, 3342
Fsp4HI GCNGC 5 cut(s) 258, 742, 1700, 2988, 4349
FspBI CTAG 5 cut(s) 96, 527, 1280, 1470, 2279
GlaI GCGC 2 cut(s) 3296, 3725
GluI GCNGC 5 cut(s) 258, 742, 1700, 2988, 4349
GsaI CCCAGC 3 cut(s) 2535, 3468, 4206
HaeII RGCGCY 1 cut(s) 3727
HaeIII GGCC 8 cut(s) 983, 1166, 1615, 1808, 2866, 3367, 3429, 3474
HapII CCGG 5 cut(s) 2021, 2376, 2560, 3576, 4231
HgaI GACGC 1 cut(s) 1873
HhaI GCGC 2 cut(s) 3297, 3726
Hin1I GRCGYC 1 cut(s) 450
Hin6I GCGC 2 cut(s) 3295, 3724
HinP1I GCGC 2 cut(s) 3295, 3724
HindIII AAGCTT 2 cut(s) 2054, 3569
HpaII CCGG 5 cut(s) 2021, 2376, 2560, 3576, 4231
HphI GGTGA 9 cut(s) 31, 95, 437, 1094, 2059, 2780, 3373, 3755, 3770
Hpy166II GTNNAC 3 cut(s) 540, 1907, 3544
Hpy8I GTNNAC 3 cut(s) 540, 1907, 3544
HpyCH4IV ACGT 4 cut(s) 450, 477, 1522, 2884
HpyF10VI GCNNNNNNNGC 6 cut(s) 1652, 3447, 3456, 3568, 3818, 4040
HpyF3I CTNAG 9 cut(s) 1695, 1713, 1803, 2268, 2319, 2391, 2716, 3589, 3921
HpySE526I ACGT 4 cut(s) 450, 477, 1522, 2884
Hsp92I GRCGYC 1 cut(s) 450
HspAI GCGC 2 cut(s) 3295, 3724
Kpn2I TCCGGA 1 cut(s) 2020
KroI GCCGGC 1 cut(s) 4230
KroNI GCCGGC 1 cut(s) 4232
Ksp22I TGATCA 1 cut(s) 124
LguI GCTCTTC 1 cut(s) 3714
LmnI GCTCC 8 cut(s) 2197, 2515, 2884, 2898, 3119, 3337, 3398, 4082
Lsp1109I GCAGC 4 cut(s) 753, 1711, 2999, 4360
LweI GCATC 7 cut(s) 1813, 2485, 2765, 3087, 3964, 4255, 4282
MaeI CTAG 5 cut(s) 96, 527, 1280, 1470, 2279
MaeII ACGT 4 cut(s) 450, 477, 1522, 2884
MaeIII GTNAC 9 cut(s) 335, 506, 1632, 2154, 2386, 3254, 3688, 3743, 3758
MfeI CAATTG 1 cut(s) 283
MhlI GDGCHC 4 cut(s) 1610, 3124, 3234, 3342
MlyI GAGTC 7 cut(s) 95, 545, 1460, 2803, 3262, 3634, 3813
MmeI TCCRAC 4 cut(s) 81, 1498, 2724, 4060
Mph1103I ATGCAT 1 cut(s) 2780
MroI TCCGGA 1 cut(s) 2020
MroNI GCCGGC 1 cut(s) 4230
MroXI GAANNNNTTC 3 cut(s) 1671, 3192, 3659
MslI CAYNNNNRTG 3 cut(s) 81, 2685, 3741
MspI CCGG 5 cut(s) 2021, 2376, 2560, 3576, 4231
MspR9I CCNGG 9 cut(s) 62, 2183, 2376, 2655, 2796, 3061, 3207, 3576, 3577
MunI CAATTG 1 cut(s) 283
Mva1269I GAATGC 5 cut(s) 709, 808, 1568, 1792, 3271
MvaI CCWGG 6 cut(s) 62, 2183, 2655, 2796, 3061, 3207
MwoI GCNNNNNNNGC 6 cut(s) 1652, 3447, 3456, 3568, 3818, 4040
NaeI GCCGGC 1 cut(s) 4232
NciI CCSGG 3 cut(s) 2376, 3576, 3577
NdeI CATATG 3 cut(s) 78, 2397, 2453
NgoMIV GCCGGC 1 cut(s) 4230
NlaIV GGNNCC 5 cut(s) 2025, 2332, 3121, 3553, 4118
NmeAIII GCCGAG 1 cut(s) 3622
NmuCI GTSAC 5 cut(s) 335, 506, 3254, 3743, 3758
NsiI ATGCAT 1 cut(s) 2780
NspI RCATGY 4 cut(s) 2007, 2792, 3542, 3913
NspV TTCGAA 3 cut(s) 1064, 1247, 4277
PaeI GCATGC 1 cut(s) 2792
PagI TCATGA 7 cut(s) 724, 823, 931, 1114, 1297, 2419, 3736
PceI AGGCCT 1 cut(s) 2866
PciI ACATGT 1 cut(s) 2003
PciSI GCTCTTC 1 cut(s) 3714
PctI GAATGC 5 cut(s) 709, 808, 1568, 1792, 3271
PdiI GCCGGC 1 cut(s) 4232
PdmI GAANNNNTTC 3 cut(s) 1671, 3192, 3659
PflFI GACNNNGTC 1 cut(s) 2306
PinAI ACCGGT 1 cut(s) 2559
PkrI GCNGC 5 cut(s) 259, 743, 1701, 2989, 4350
PleI GAGTC 7 cut(s) 94, 544, 1459, 2803, 3261, 3634, 3812
PpsI GAGTC 7 cut(s) 94, 544, 1459, 2803, 3261, 3634, 3812
Ppu21I YACGTR 1 cut(s) 2885
PscI ACATGT 1 cut(s) 2003
PshAI GACNNNNGTC 1 cut(s) 3252
PshBI ATTAAT 3 cut(s) 894, 1122, 1974
Psp124BI GAGCTC 1 cut(s) 3342
Psp6I CCWGG 6 cut(s) 60, 2181, 2653, 2794, 3059, 3205
PspEI GGTNACC 1 cut(s) 1632
PspFI CCCAGC 3 cut(s) 2531, 3464, 4202
PspGI CCWGG 6 cut(s) 60, 2181, 2653, 2794, 3059, 3205
PspN4I GGNNCC 5 cut(s) 2025, 2332, 3121, 3553, 4118
PspPI GGNCC 1 cut(s) 3375
PstNI CAGNNNCTG 2 cut(s) 1886, 2267
PsyI GACNNNGTC 1 cut(s) 2306
RsaI GTAC 8 cut(s) 1876, 2250, 2499, 2675, 2840, 2887, 3313, 4098
RsaNI GTAC 8 cut(s) 1875, 2249, 2498, 2674, 2839, 2886, 3312, 4097
RseI CAYNNNNRTG 3 cut(s) 81, 2685, 3741
SacI GAGCTC 1 cut(s) 3342
SapI GCTCTTC 1 cut(s) 3714
SatI GCNGC 5 cut(s) 258, 742, 1700, 2988, 4349
Sau96I GGNCC 1 cut(s) 3375
SchI GAGTC 7 cut(s) 95, 545, 1460, 2803, 3262, 3634, 3813
ScrFI CCNGG 9 cut(s) 62, 2183, 2376, 2655, 2796, 3061, 3207, 3576, 3577
SduI GDGCHC 4 cut(s) 1610, 3124, 3234, 3342
SfaNI GCATC 7 cut(s) 1813, 2485, 2765, 3087, 3964, 4255, 4282
SfcI CTRYAG 2 cut(s) 1638, 3602
SfuI TTCGAA 3 cut(s) 1064, 1247, 4277
SinI GGWCC 1 cut(s) 3375
SmaI CCCGGG 1 cut(s) 3577
SmiMI CAYNNNNRTG 3 cut(s) 81, 2685, 3741
SmlI CTYRAG 3 cut(s) 31, 168, 4361
SmoI CTYRAG 3 cut(s) 31, 168, 4361
SphI GCATGC 1 cut(s) 2792
SseBI AGGCCT 1 cut(s) 2866
SsiI CCGC 6 cut(s) 215, 257, 1334, 3355, 3482, 4313
SspMI CTAG 5 cut(s) 96, 527, 1280, 1470, 2279
SstI GAGCTC 1 cut(s) 3342
StuI AGGCCT 1 cut(s) 2866
StyD4I CCNGG 9 cut(s) 60, 2181, 2374, 2653, 2794, 3059, 3205, 3574, 3575
StyI CCWWGG 1 cut(s) 3504
TaiI ACGT 4 cut(s) 453, 480, 1525, 2887
TatI WGTACW 1 cut(s) 4096
TauI GCSGC 1 cut(s) 260
TseFI GTSAC 5 cut(s) 335, 506, 3254, 3743, 3758
TseI GCWGC 4 cut(s) 741, 1699, 2987, 4348
Tsp45I GTSAC 5 cut(s) 335, 506, 3254, 3743, 3758
TspGWI ACGGA 1 cut(s) 1639
TspMI CCCGGG 1 cut(s) 3575
Tth111I GACNNNGTC 1 cut(s) 2306
VpaK11BI GGWCC 1 cut(s) 3375
VspI ATTAAT 3 cut(s) 894, 1122, 1974
XagI CCTNNNNNAGG 1 cut(s) 34
XapI RAATTY 5 cut(s) 1763, 2699, 2845, 3200, 3432
XbaI TCTAGA 1 cut(s) 1279
XceI RCATGY 4 cut(s) 2007, 2792, 3542, 3913
XmaI CCCGGG 1 cut(s) 3575
XmnI GAANNNNTTC 3 cut(s) 1671, 3192, 3659
XspI CTAG 5 cut(s) 96, 527, 1280, 1470, 2279
ZraI GACGTC 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 2780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.