SNF2 domain-containing protein CLASSY
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2004 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 694, 2567 |
| Acc36I | ACCTGC | 1 cut(s) | 1044 |
| Acc65I | GGTACC | 1 cut(s) | 932 |
| AccB1I | GGYRCC | 1 cut(s) | 932 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1927, 2996, 3169 |
| AccI | GTMKAC | 1 cut(s) | 978 |
| AccII | CGCG | 2 cut(s) | 596, 2165 |
| AccIII | TCCGGA | 1 cut(s) | 556 |
| AciI | CCGC | 6 cut(s) | 199, 596, 1830, 2165, 2582, 2809 |
| AclI | AACGTT | 1 cut(s) | 1395 |
| AclWI | GGATC | 4 cut(s) | 1121, 1646, 2490, 3007 |
| AcsI | RAATTY | 7 cut(s) | 124, 292, 1757, 1771, 2601, 2639, 2922 |
| AcuI | CTGAAG | 8 cut(s) | 270, 1632, 1874, 2064, 2202, 2313, 2888, 2931 |
| AfaI | GTAC | 5 cut(s) | 934, 1733, 1957, 2670, 3200 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 751, 1927, 2242, 2996, 3169 |
| AflII | CTTAAG | 1 cut(s) | 2486 |
| AflIII | ACRYGT | 1 cut(s) | 1868 |
| AhlI | ACTAGT | 1 cut(s) | 11 |
| AjnI | CCWGG | 5 cut(s) | 1091, 1482, 1711, 2373, 2548 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2699, 2731 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 229, 261, 2991, 3023 |
| Alw21I | GWGCWC | 3 cut(s) | 893, 1148, 2649 |
| Alw26I | GTCTC | 7 cut(s) | 114, 933, 1265, 2056, 2276, 2553, 2949 |
| AlwI | GGATC | 4 cut(s) | 1121, 1646, 2490, 3007 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 112 |
| Ama87I | CYCGRG | 1 cut(s) | 2254 |
| Aor13HI | TCCGGA | 1 cut(s) | 556 |
| AoxI | GGCC | 2 cut(s) | 2245, 2726 |
| ApeKI | GCWGC | 4 cut(s) | 1323, 2691, 2884, 2962 |
| ApoI | RAATTY | 7 cut(s) | 124, 292, 1757, 1771, 2601, 2639, 2922 |
| AseI | ATTAAT | 1 cut(s) | 1794 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 34, 2345, 2544, 2922 |
| Asp718I | GGTACC | 1 cut(s) | 932 |
| AspA2I | CCTAGG | 1 cut(s) | 494 |
| AspLEI | GCGC | 1 cut(s) | 3059 |
| AspS9I | GGNCC | 3 cut(s) | 2233, 2245, 2726 |
| AsuC2I | CCSGG | 1 cut(s) | 2223 |
| AsuNHI | GCTAGC | 1 cut(s) | 1039 |
| AvaI | CYCGRG | 1 cut(s) | 2254 |
| AvaII | GGWCC | 1 cut(s) | 2233 |
| AvrII | CCTAGG | 1 cut(s) | 494 |
| BanI | GGYRCC | 1 cut(s) | 932 |
| BanII | GRGCYC | 2 cut(s) | 893, 1148 |
| BauI | CACGAG | 1 cut(s) | 3323 |
| BbsI | GAAGAC | 5 cut(s) | 692, 747, 1971, 2718, 3232 |
| Bbv12I | GWGCWC | 3 cut(s) | 893, 1148, 2649 |
| BbvI | GCAGC | 4 cut(s) | 1310, 2678, 2896, 2974 |
| BccI | CCATC | 8 cut(s) | 990, 1256, 1929, 2093, 2537, 2683, 3171, 3307 |
| BceAI | ACGGC | 1 cut(s) | 212 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1648, 1682 |
| BciT130I | CCWGG | 5 cut(s) | 1093, 1484, 1713, 2375, 2550 |
| BciVI | GTATCC | 1 cut(s) | 2406 |
| BclI | TGATCA | 2 cut(s) | 445, 2874 |
| BcnI | CCSGG | 1 cut(s) | 2223 |
| BcoDI | GTCTC | 7 cut(s) | 114, 933, 1265, 2056, 2276, 2553, 2949 |
| BcuI | ACTAGT | 1 cut(s) | 11 |
| BfaI | CTAG | 8 cut(s) | 12, 24, 495, 723, 1040, 1119, 1575, 2102 |
| BfmI | CTRYAG | 3 cut(s) | 393, 1131, 2018 |
| BfoI | RGCGCY | 1 cut(s) | 3060 |
| BfrI | CTTAAG | 1 cut(s) | 2486 |
| BfuAI | ACCTGC | 1 cut(s) | 1044 |
| BfuI | GTATCC | 1 cut(s) | 2406 |
| BisI | GCNGC | 5 cut(s) | 1324, 2166, 2692, 2885, 2963 |
| BlnI | CCTAGG | 1 cut(s) | 494 |
| BlsI | GCNGC | 5 cut(s) | 1325, 2167, 2693, 2886, 2964 |
| BmcAI | AGTACT | 1 cut(s) | 3200 |
| Bme1390I | CCNGG | 6 cut(s) | 1093, 1484, 1713, 2223, 2375, 2550 |
| Bme18I | GGWCC | 1 cut(s) | 2233 |
| BmeT110I | CYCGRG | 1 cut(s) | 2254 |
| BmgT120I | GGNCC | 3 cut(s) | 2233, 2245, 2726 |
| BmiI | GGNNCC | 5 cut(s) | 934, 1332, 2527, 2821, 3092 |
| BmrFI | CCNGG | 6 cut(s) | 1093, 1484, 1713, 2223, 2375, 2550 |
| BmtI | GCTAGC | 1 cut(s) | 1043 |
| BpiI | GAAGAC | 5 cut(s) | 692, 747, 1971, 2718, 3232 |
| BpmI | CTGGAG | 1 cut(s) | 111 |
| BpuEI | CTTGAG | 4 cut(s) | 1132, 1333, 1655, 2732 |
| BpuMI | CCSGG | 1 cut(s) | 2223 |
| BsaAI | YACGTR | 1 cut(s) | 856 |
| BsaJI | CCNNGG | 8 cut(s) | 179, 494, 583, 1092, 1178, 1557, 1711, 2222 |
| BsaWI | WCCGGW | 1 cut(s) | 556 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 751, 1927, 2242, 2996, 3169 |
| Bse1I | ACTGG | 4 cut(s) | 1864, 2909, 3018, 3240 |
| Bse3DI | GCAATG | 1 cut(s) | 2889 |
| BseAI | TCCGGA | 1 cut(s) | 556 |
| BseBI | CCWGG | 5 cut(s) | 1093, 1484, 1713, 2375, 2550 |
| BseDI | CCNNGG | 8 cut(s) | 179, 494, 583, 1092, 1178, 1557, 1711, 2222 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 751, 1927, 2242, 2996, 3169 |
| BseMI | GCAATG | 1 cut(s) | 2889 |
| BseMII | CTCAG | 5 cut(s) | 126, 627, 906, 3027, 3177 |
| BseNI | ACTGG | 4 cut(s) | 1864, 2909, 3018, 3240 |
| BseRI | GAGGAG | 5 cut(s) | 157, 695, 1204, 1343, 1373 |
| BseXI | GCAGC | 4 cut(s) | 1310, 2678, 2896, 2974 |
| BseYI | CCCAGC | 2 cut(s) | 1655, 1778 |
| Bsh1236I | CGCG | 2 cut(s) | 596, 2165 |
| BshFI | GGCC | 2 cut(s) | 2247, 2728 |
| BshNI | GGYRCC | 1 cut(s) | 932 |
| BsiHKAI | GWGCWC | 3 cut(s) | 893, 1148, 2649 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2254 |
| BsiSI | CCGG | 2 cut(s) | 557, 2222 |
| BslFI | GGGAC | 6 cut(s) | 775, 1109, 1480, 1694, 1795, 2341 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 751, 1927, 2242, 2996, 3169 |
| BsmAI | GTCTC | 7 cut(s) | 114, 933, 1265, 2056, 2276, 2553, 2949 |
| BsmBI | CGTCTC | 1 cut(s) | 933 |
| BsmFI | GGGAC | 6 cut(s) | 775, 1109, 1480, 1694, 1795, 2341 |
| BsmI | GAATGC | 3 cut(s) | 1422, 2127, 2193 |
| BsnI | GGCC | 2 cut(s) | 2247, 2728 |
| BsoBI | CYCGRG | 1 cut(s) | 2254 |
| Bsp1286I | GDGCHC | 3 cut(s) | 893, 1148, 2649 |
| Bsp13I | TCCGGA | 1 cut(s) | 556 |
| Bsp19I | CCATGG | 1 cut(s) | 1557 |
| BspACI | CCGC | 6 cut(s) | 199, 596, 1830, 2165, 2582, 2809 |
| BspANI | GGCC | 2 cut(s) | 2247, 2728 |
| BspCNI | CTCAG | 5 cut(s) | 127, 628, 907, 3028, 3178 |
| BspEI | TCCGGA | 1 cut(s) | 556 |
| BspFNI | CGCG | 2 cut(s) | 596, 2165 |
| BspLI | GGNNCC | 5 cut(s) | 934, 1332, 2527, 2821, 3092 |
| BspMAI | CTGCAG | 1 cut(s) | 2022 |
| BspMI | ACCTGC | 1 cut(s) | 1044 |
| BspOI | GCTAGC | 1 cut(s) | 1043 |
| BspPI | GGATC | 4 cut(s) | 1121, 1646, 2490, 3007 |
| BspT107I | GGYRCC | 1 cut(s) | 932 |
| BspTI | CTTAAG | 1 cut(s) | 2486 |
| BsrDI | GCAATG | 1 cut(s) | 2889 |
| BsrI | ACTGG | 4 cut(s) | 1864, 2909, 3018, 3240 |
| BssECI | CCNNGG | 8 cut(s) | 179, 494, 583, 1092, 1178, 1557, 1711, 2222 |
| BssNAI | GTATAC | 1 cut(s) | 979 |
| BssSI | CACGAG | 1 cut(s) | 3323 |
| BssT1I | CCWWGG | 4 cut(s) | 494, 583, 1178, 1557 |
| Bst1107I | GTATAC | 1 cut(s) | 979 |
| Bst2BI | CACGAG | 1 cut(s) | 3323 |
| Bst2UI | CCWGG | 5 cut(s) | 1093, 1484, 1713, 2375, 2550 |
| Bst6I | CTCTTC | 6 cut(s) | 134, 363, 918, 1263, 1350, 3250 |
| BstAFI | CTTAAG | 1 cut(s) | 2486 |
| BstBAI | YACGTR | 1 cut(s) | 856 |
| BstC8I | GCNNGC | 4 cut(s) | 1041, 2163, 2730, 3147 |
| BstDEI | CTNAG | 9 cut(s) | 135, 636, 716, 915, 2423, 2555, 2756, 3036, 3186 |
| BstDSI | CCRYGG | 1 cut(s) | 1557 |
| BstEII | GGTNACC | 1 cut(s) | 1613 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2240 |
| BstFNI | CGCG | 2 cut(s) | 596, 2165 |
| BstH2I | RGCGCY | 1 cut(s) | 3060 |
| BstHHI | GCGC | 1 cut(s) | 3059 |
| BstMAI | GTCTC | 7 cut(s) | 114, 933, 1265, 2056, 2276, 2553, 2949 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1526, 2227, 2384, 2433, 2498, 3328 |
| BstNI | CCWGG | 5 cut(s) | 1093, 1484, 1713, 2375, 2550 |
| BstNSI | RCATGY | 5 cut(s) | 157, 614, 954, 2516, 3033 |
| BstPI | GGTNACC | 1 cut(s) | 1613 |
| BstSCI | CCNGG | 6 cut(s) | 1091, 1482, 1711, 2221, 2373, 2548 |
| BstSFI | CTRYAG | 3 cut(s) | 393, 1131, 2018 |
| BstUI | CGCG | 2 cut(s) | 596, 2165 |
| BstV1I | GCAGC | 4 cut(s) | 1310, 2678, 2896, 2974 |
| BstV2I | GAAGAC | 5 cut(s) | 692, 747, 1971, 2718, 3232 |
| BstX2I | RGATCY | 4 cut(s) | 1126, 1651, 2482, 2999 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1226, 2092 |
| BstYI | RGATCY | 4 cut(s) | 1126, 1651, 2482, 2999 |
| BstZ17I | GTATAC | 1 cut(s) | 979 |
| BsuI | GTATCC | 1 cut(s) | 2406 |
| BsuRI | GGCC | 2 cut(s) | 2247, 2728 |
| BtgI | CCRYGG | 1 cut(s) | 1557 |
| BtgZI | GCGATG | 1 cut(s) | 3206 |
| BtsIMutI | CAGTG | 5 cut(s) | 1513, 2178, 2330, 2821, 3001 |
| BveI | ACCTGC | 1 cut(s) | 1044 |
| Cac8I | GCNNGC | 4 cut(s) | 1041, 2163, 2730, 3147 |
| CaiI | CAGNNNCTG | 1 cut(s) | 112 |
| CfoI | GCGC | 1 cut(s) | 3059 |
| Cfr13I | GGNCC | 3 cut(s) | 2233, 2245, 2726 |
| CseI | GACGC | 1 cut(s) | 1498 |
| Csp6I | GTAC | 5 cut(s) | 933, 1732, 1956, 2669, 3199 |
| CviQI | GTAC | 5 cut(s) | 933, 1732, 1956, 2669, 3199 |
| DdeI | CTNAG | 9 cut(s) | 135, 636, 716, 915, 2423, 2555, 2756, 3036, 3186 |
| DraI | TTTAAA | 1 cut(s) | 1308 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 694, 2567 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 694, 2567 |
| Eam1104I | CTCTTC | 6 cut(s) | 134, 363, 918, 1263, 1350, 3250 |
| EarI | CTCTTC | 6 cut(s) | 134, 363, 918, 1263, 1350, 3250 |
| EciI | GGCGGA | 2 cut(s) | 214, 1845 |
| Ecl136II | GAGCTC | 2 cut(s) | 891, 1146 |
| Eco130I | CCWWGG | 4 cut(s) | 494, 583, 1178, 1557 |
| Eco24I | GRGCYC | 2 cut(s) | 893, 1148 |
| Eco47I | GGWCC | 1 cut(s) | 2233 |
| Eco53kI | GAGCTC | 2 cut(s) | 891, 1146 |
| Eco57I | CTGAAG | 8 cut(s) | 270, 1632, 1874, 2064, 2202, 2313, 2888, 2931 |
| Eco88I | CYCGRG | 1 cut(s) | 2254 |
| Eco91I | GGTNACC | 1 cut(s) | 1613 |
| EcoICRI | GAGCTC | 2 cut(s) | 891, 1146 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2240 |
| EcoO65I | GGTNACC | 1 cut(s) | 1613 |
| EcoRII | CCWGG | 5 cut(s) | 1091, 1482, 1711, 2373, 2548 |
| EcoT14I | CCWWGG | 4 cut(s) | 494, 583, 1178, 1557 |
| EcoT22I | ATGCAT | 2 cut(s) | 1838, 2937 |
| EcoT38I | GRGCYC | 2 cut(s) | 893, 1148 |
| ErhI | CCWWGG | 4 cut(s) | 494, 583, 1178, 1557 |
| Esp3I | CGTCTC | 1 cut(s) | 933 |
| FaqI | GGGAC | 6 cut(s) | 775, 1109, 1480, 1694, 1795, 2341 |
| FauI | CCCGC | 2 cut(s) | 589, 2589 |
| FauNDI | CATATG | 1 cut(s) | 2967 |
| FbaI | TGATCA | 2 cut(s) | 445, 2874 |
| FblI | GTMKAC | 1 cut(s) | 978 |
| Fnu4HI | GCNGC | 5 cut(s) | 1324, 2166, 2692, 2885, 2963 |
| FriOI | GRGCYC | 2 cut(s) | 893, 1148 |
| Fsp4HI | GCNGC | 5 cut(s) | 1324, 2166, 2692, 2885, 2963 |
| FspBI | CTAG | 8 cut(s) | 12, 24, 495, 723, 1040, 1119, 1575, 2102 |
| GlaI | GCGC | 1 cut(s) | 3058 |
| GluI | GCNGC | 5 cut(s) | 1324, 2166, 2692, 2885, 2963 |
| GsaI | CCCAGC | 2 cut(s) | 1659, 1782 |
| GsuI | CTGGAG | 1 cut(s) | 111 |
| HaeII | RGCGCY | 1 cut(s) | 3060 |
| HaeIII | GGCC | 2 cut(s) | 2247, 2728 |
| HapII | CCGG | 2 cut(s) | 557, 2222 |
| HgaI | GACGC | 1 cut(s) | 1498 |
| HhaI | GCGC | 1 cut(s) | 3059 |
| Hin6I | GCGC | 1 cut(s) | 3057 |
| HinP1I | GCGC | 1 cut(s) | 3057 |
| HincII | GTYRAC | 1 cut(s) | 151 |
| HindII | GTYRAC | 1 cut(s) | 151 |
| HindIII | AAGCTT | 2 cut(s) | 375, 2651 |
| HpaI | GTTAAC | 1 cut(s) | 151 |
| HpaII | CCGG | 2 cut(s) | 557, 2222 |
| Hpy166II | GTNNAC | 6 cut(s) | 151, 170, 979, 1513, 1990, 2671 |
| Hpy8I | GTNNAC | 6 cut(s) | 151, 170, 979, 1513, 1990, 2671 |
| Hpy99I | CGWCG | 4 cut(s) | 198, 221, 1883, 3311 |
| HpyCH4IV | ACGT | 8 cut(s) | 855, 1068, 1395, 1707, 1870, 1986, 2056, 2364 |
| HpyCH4V | TGCA | 9 cut(s) | 1420, 1836, 1943, 2020, 2191, 2512, 2694, 2894, 2935 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1526, 2227, 2384, 2433, 2498, 3328 |
| HpyF3I | CTNAG | 9 cut(s) | 135, 636, 716, 915, 2423, 2555, 2756, 3036, 3186 |
| HpySE526I | ACGT | 8 cut(s) | 855, 1068, 1395, 1707, 1870, 1986, 2056, 2364 |
| HspAI | GCGC | 1 cut(s) | 3057 |
| Kpn2I | TCCGGA | 1 cut(s) | 556 |
| KpnI | GGTACC | 1 cut(s) | 936 |
| Ksp22I | TGATCA | 2 cut(s) | 445, 2874 |
| KspAI | GTTAAC | 1 cut(s) | 151 |
| LmnI | GCTCC | 3 cut(s) | 1330, 1942, 2881 |
| Lsp1109I | GCAGC | 4 cut(s) | 1310, 2678, 2896, 2974 |
| MaeI | CTAG | 8 cut(s) | 12, 24, 495, 723, 1040, 1119, 1575, 2102 |
| MaeII | ACGT | 8 cut(s) | 855, 1068, 1395, 1707, 1870, 1986, 2056, 2364 |
| MaeIII | GTNAC | 2 cut(s) | 1613, 2900 |
| MflI | RGATCY | 4 cut(s) | 1126, 1651, 2482, 2999 |
| MhlI | GDGCHC | 3 cut(s) | 893, 1148, 2649 |
| MlyI | GAGTC | 1 cut(s) | 836 |
| MmeI | TCCRAC | 3 cut(s) | 403, 1035, 2723 |
| Mph1103I | ATGCAT | 2 cut(s) | 1838, 2937 |
| MroI | TCCGGA | 1 cut(s) | 556 |
| MroXI | GAANNNNTTC | 4 cut(s) | 34, 2345, 2544, 2922 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1224, 2090, 2517, 3187 |
| MspA1I | CMGCKG | 2 cut(s) | 2387, 2660 |
| MspCI | CTTAAG | 1 cut(s) | 2486 |
| MspI | CCGG | 2 cut(s) | 557, 2222 |
| MspR9I | CCNGG | 6 cut(s) | 1093, 1484, 1713, 2223, 2375, 2550 |
| Mva1269I | GAATGC | 3 cut(s) | 1422, 2127, 2193 |
| MvaI | CCWGG | 5 cut(s) | 1093, 1484, 1713, 2375, 2550 |
| MvnI | CGCG | 2 cut(s) | 596, 2165 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1526, 2227, 2384, 2433, 2498, 3328 |
| NciI | CCSGG | 1 cut(s) | 2223 |
| NcoI | CCATGG | 1 cut(s) | 1557 |
| NdeI | CATATG | 1 cut(s) | 2967 |
| NheI | GCTAGC | 1 cut(s) | 1039 |
| NlaIV | GGNNCC | 5 cut(s) | 934, 1332, 2527, 2821, 3092 |
| NmuCI | GTSAC | 2 cut(s) | 1613, 2900 |
| NsiI | ATGCAT | 2 cut(s) | 1838, 2937 |
| NspI | RCATGY | 5 cut(s) | 157, 614, 954, 2516, 3033 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2405 |
| PctI | GAATGC | 3 cut(s) | 1422, 2127, 2193 |
| PdmI | GAANNNNTTC | 4 cut(s) | 34, 2345, 2544, 2922 |
| PflFI | GACNNNGTC | 2 cut(s) | 1478, 1970 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1927, 2996, 3169 |
| PfoI | TCCNGGA | 1 cut(s) | 1482 |
| PkrI | GCNGC | 5 cut(s) | 1325, 2167, 2693, 2886, 2964 |
| PleI | GAGTC | 1 cut(s) | 836 |
| PpsI | GAGTC | 1 cut(s) | 836 |
| Ppu21I | YACGTR | 1 cut(s) | 856 |
| PshBI | ATTAAT | 1 cut(s) | 1794 |
| PsiI | TTATAA | 1 cut(s) | 2004 |
| Psp124BI | GAGCTC | 2 cut(s) | 893, 1148 |
| Psp1406I | AACGTT | 1 cut(s) | 1395 |
| Psp6I | CCWGG | 5 cut(s) | 1091, 1482, 1711, 2373, 2548 |
| PspEI | GGTNACC | 1 cut(s) | 1613 |
| PspFI | CCCAGC | 2 cut(s) | 1655, 1778 |
| PspGI | CCWGG | 5 cut(s) | 1091, 1482, 1711, 2373, 2548 |
| PspN4I | GGNNCC | 5 cut(s) | 934, 1332, 2527, 2821, 3092 |
| PspPI | GGNCC | 3 cut(s) | 2233, 2245, 2726 |
| PstI | CTGCAG | 1 cut(s) | 2022 |
| PstNI | CAGNNNCTG | 1 cut(s) | 112 |
| PsuI | RGATCY | 4 cut(s) | 1126, 1651, 2482, 2999 |
| PsyI | GACNNNGTC | 2 cut(s) | 1478, 1970 |
| PvuII | CAGCTG | 2 cut(s) | 2387, 2660 |
| RsaI | GTAC | 5 cut(s) | 934, 1733, 1957, 2670, 3200 |
| RsaNI | GTAC | 5 cut(s) | 933, 1732, 1956, 2669, 3199 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1224, 2090, 2517, 3187 |
| SacI | GAGCTC | 2 cut(s) | 893, 1148 |
| SatI | GCNGC | 5 cut(s) | 1324, 2166, 2692, 2885, 2963 |
| Sau96I | GGNCC | 3 cut(s) | 2233, 2245, 2726 |
| ScaI | AGTACT | 1 cut(s) | 3200 |
| SchI | GAGTC | 1 cut(s) | 836 |
| ScrFI | CCNGG | 6 cut(s) | 1093, 1484, 1713, 2223, 2375, 2550 |
| SduI | GDGCHC | 3 cut(s) | 893, 1148, 2649 |
| SfcI | CTRYAG | 3 cut(s) | 393, 1131, 2018 |
| SinI | GGWCC | 1 cut(s) | 2233 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1224, 2090, 2517, 3187 |
| SmlI | CTYRAG | 5 cut(s) | 1147, 1312, 1634, 2486, 2747 |
| SmoI | CTYRAG | 5 cut(s) | 1147, 1312, 1634, 2486, 2747 |
| SpeI | ACTAGT | 1 cut(s) | 11 |
| SsiI | CCGC | 6 cut(s) | 199, 596, 1830, 2165, 2582, 2809 |
| SspMI | CTAG | 8 cut(s) | 12, 24, 495, 723, 1040, 1119, 1575, 2102 |
| SstI | GAGCTC | 2 cut(s) | 893, 1148 |
| StyD4I | CCNGG | 6 cut(s) | 1091, 1482, 1711, 2221, 2373, 2548 |
| StyI | CCWWGG | 4 cut(s) | 494, 583, 1178, 1557 |
| TaiI | ACGT | 8 cut(s) | 858, 1071, 1398, 1710, 1873, 1989, 2059, 2367 |
| TatI | WGTACW | 2 cut(s) | 2668, 3198 |
| TauI | GCSGC | 1 cut(s) | 2168 |
| TscAI | CASTG | 5 cut(s) | 1520, 2185, 2337, 2821, 3001 |
| TseFI | GTSAC | 2 cut(s) | 1613, 2900 |
| TseI | GCWGC | 4 cut(s) | 1323, 2691, 2884, 2962 |
| Tsp45I | GTSAC | 2 cut(s) | 1613, 2900 |
| TspGWI | ACGGA | 3 cut(s) | 1201, 2078, 2466 |
| TspRI | CASTG | 5 cut(s) | 1520, 2185, 2337, 2821, 3001 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1478, 1970 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1927, 2996, 3169 |
| Vha464I | CTTAAG | 1 cut(s) | 2486 |
| VpaK11BI | GGWCC | 1 cut(s) | 2233 |
| VspI | ATTAAT | 1 cut(s) | 1794 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2240 |
| XapI | RAATTY | 7 cut(s) | 124, 292, 1757, 1771, 2601, 2639, 2922 |
| XbaI | TCTAGA | 1 cut(s) | 1118 |
| XceI | RCATGY | 5 cut(s) | 157, 614, 954, 2516, 3033 |
| XmaJI | CCTAGG | 1 cut(s) | 494 |
| XmiI | GTMKAC | 1 cut(s) | 978 |
| XmnI | GAANNNNTTC | 4 cut(s) | 34, 2345, 2544, 2922 |
| XspI | CTAG | 8 cut(s) | 12, 24, 495, 723, 1040, 1119, 1575, 2102 |
| ZrmI | AGTACT | 1 cut(s) | 3200 |
| Zsp2I | ATGCAT | 2 cut(s) | 1838, 2937 |