Rroxscaffold_3G00251450

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001072
Physical Location & Seq
Forward (+)
45330475 .. 45339136
8662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251450.1

Sequence Viewer

Length: 4539 bp
ATGCACCTTCTCCAAGATATGCAAGATTCAGAGTTGCTACTCGAAAAGTTGAATCCTAAGGACATTGTGGAGTCCTTAGAGAAGTCTATGGATTATAGGCCTATATCAAGCAGAACAAGGTCGAAGAGAGAAATAGCTCTCATGGAACGTTATTGGGAAATGAAGATCAACAGTGGGGTGAGTCCAGCAAGGAGTAAGAAAATGAGGAGGTCCAACAAGGCTTCTGTTTCTCATATGAGTGAGTCCAGTTCTAGGAAACAGAGTTTTGAGTGGGTTGCTGATAATGTGGAACAGACTGATGACGATTCGGAGGGTTTTTATTCTCAAGAGAGTAGTGGGAAACAGGGAAAGGGGGAAGGAGTTGCGGTTGGTGTGAAGAGAAAGAGGAGTTTAGGATTAGATGATAGCAACAAAGATGGTTGCAACTGGAGAGCTGTTTCAGATAATGGTGTGGAAGTTGTCGATTTGGTGGATAGTGATGATGATGAGGAGGTAGTAGTTTCTAAAGGTAAAGAGGGAGGAGGAGGAGGAGTTGATGTTGATGATGTGAGTGATGGTGGAAGTAATGAGGATGTTGATGATGTCAGTGGTAACGAGAGTGATGAGGCCGTTTCATCAGCAGATGAAGAGGACAGTAGTGACGAAAGTGAGTTCTTGCCAGGGAAAGAGTCCACAGTGGAGGAAAATGATGAGGAATGTGTTTCCTCATCAGATGAAGATAGCTGTGAGGAGGGAAATGAAGAGGAGAGTGAATTGACAGAGAAGAATGAGAAAGAGAGCAAGGAGGAAAGTGTTGAGGTTGGTTTGGAGAGAAATAGAAATGCTGATGGGGATGATCTGCATTCTTCTTATGGTCATGATTTTGATGATAGCAGCAAGAGAGTAAGCAAAAGAGAAACTGTTGAGGTTGGTCCGGAAGGAAAGATAAGTGATGATGGTGATGATCTGCATTCCTGTTCTGCTCATGATACTGATGTCAGAAGTGAGCAAGTCTGGAAGGAAGAAAGTCTCGGGATTCTTCCGAAGGGAAAGATTAATGCTGATGGGGATGATCTACATTCTTCTTTTGGTCATGATATCGATGACAGAAGTGCGAAATTGGGGGAGGCAGAGAGTGTGTTGGTCGAAGAGAGAACTGGGTGTGATAGAAGTGATGATAACAATGATGGGAAAGTGTGGCAGGAAGAAATTGTTGGGGTTGGTTCGAAGGAAAACAGAAGTGGTGAGGGGTATAATCTACGTTCTTCCTCTGTTCATGATATTAATGACAGAACTGAGAAATTGGGGGAGGCAGAGAGTGTGTTGGCCGAAGGGAGAATTGGGTGTGATAGAAGTGATGATAACAATGATGGGAAAGTGTGGAAGGAAGAAAGTGTTGGGGTTGGTTTGAAGGAAAACAGAAGTGGTGATGAGTGTAATCTACATTCTTCTTCTGTTCATGATATGAATGACAGAAGTGAGAAACTGGGAAAGGCGGGAGGTGTATCTGCTGAAAGGAAAGACGGGTGGGATAAAAGAAGAGAATACGGCAGTGAGGGAAAAACTGGTTTTGGTTATAGCAGAAATGAAAACAATGGTAAATTGAAAGCAGAGTCCGAAACTGGTTCTGCTAGTAGATTAAAGGATGACACCAAATATAAAGGAAAAACTGGGGCTGTTGGTCGTAAAACTTGGTCTGGTAAAAAGTCCGAAGGGGATAGCTTCCTTTCTAAACAAAAGAACACCAGGGCACCAAAACGGAAAAGGTTACCTACAGTTCCATTTGAAGCCCCAAAAGTTGAATCTCTTCCTTTGATATTCAGTTTTTCTAAGCAGCCAACTATTCCTGAGAAGCCAGATTATGAGAGAGAAGTAGATGAACTTTTTGATGAATATAAATTTGCTATGGCATATGATGAGAATGCTTCGACTGAATCTAAGGGAAATGATGATGCAAGGTCAAAGAATAAGATACATGATTTCGATGATGAGACGCATGGTGGTACTTCAGAATCTGGTTTTGATAAAGGCAGTAAACTTGATGTGCAGAGGGCTAGCAAGACGGGTGTAGAGGCTAAAGGAAACAACTTTTCAGAATCCATTAATTCACGAAAGGAAGACAATGATAAGACATATGGTGGTAGTCGTCCGGAACCGTATAAGGAGAAAGAAAGGGTGAGGGAGCTTACCAACGAAAAGGGCATTACAGCACCAAAAGATTGCAATGCCTTTATGATTCTTGTAGATTCGATTTATGACAAGGGAGAAGTGTCAGGGGAAGAGTTACCTCCTTCTAACGATGAATCCCCCCAGGATGAAGCTCCAAGAGATGAGCCTCTTCCAAAGTTTTTCAGGCTTGGTCATCCTCCAAGTCCTGCACCAGAGAAGTCAGCGTCTGAGATAGAACTAGAAGAACTTTTTGAACAATATGACTTTGTCCTCATGTCTGAAGGGATTGGTTCCACTGATTCTATTGTGGTTGAAACTAATGACTCAATCCCTCCCGGTAAGGAAGTTACTCAGCATATGCTTTGTAGCCAAGGAAAACATGATCTTATACTTGATGAAGAAATTGGATACATATGTCGATTCTGCCCTCATGTGCATCAGGAGATCAAGTATATTGTACCAGACTTTGCTCCAAACCCCTATGGAAAATCTGGGAAGAAATTTTATGAAGAAGACAACCGGTCTATCCTTGATGATCTTCAGTGTAATGACCCTGACGATTCTGGCTTTAGTTCCCATGCTCATACTGAAGGCACAGTGTGGGACTTAATCCCTGGTGTGGAAAGTGATATGTACCCTCATCAGCGTGAAGGTTTTGAATTTATTTGGAGGCACTTAGCTGGTGGAATCCAGCTTGGAAAGTTGGAAAAACCTACTGCTTATGGTGGTGATGGATGCATTATATCGCATGCACCTGGAACTGGAAAGACTCGTTTGACTATAATCTTTATTCAGTCGTACATGAATTTTAACCCATCAAGCAGGCCCCTCATAGTTGCTCCACGTACCATGCTCCTTACTTGGGAAGAGGAGTTTAAGAAATGGGGTTTTGACATTCCCTTTCACAATCTTAACAATCCTGATTTCACTGGGAAAGAGGATGAAGCAGCTCGCAATCTTGTGAAGGACGGTAAAAGTTCAGAAATGATAAACTTGACTCGTATCGTGAAGCTGAAGTCCTGGGCAAAGAAAAGAAGCATCTTGGGGATTAGTTATTCACTGTTTGAGCAGGTTTGTGGAGCCCCTACCAAGAAAGGAAGACATCCACTTTCTTCAAGACGAAAGTTCGAAGTTGAGCAGATGAGTGAAATCCTTCTTAAATTTCCTGGTCTTGTAGTATTTGACGAAGGGCACAATCCTCGCAATGACCAGAGTCACTCATGGAATGCTCTTTTACAACTGAAAACAAGAAGGCGCATTATCCTCTCTGGTACTCCTTTTCAGAATAATTTTGAGGAGCTCTACAATACAGTCCGCTTGGTGAGGCCAGAATGGACCACCAATCTTACCTGCCTTGGTGCTTTTGACAAAAAGCAATGGACTTTGGACCAAATTCGAGGCAGAGAAGGCAAAAAAAGCAATGCTGGGAGAGGCCAATTTGCGGATGATAATACAAAGCGAGCCAAGGAGGTCAGAGCTATGATTTCCCCATTTGTGCATGTTTACAAAGGCACCATACTGCAAGATAAGCTTCCCGGGTTAAGGAACTCAGTTGTTGTTCTACAGCCAACAGCTTTACAGCAGAGATATTCTGACAGAACTCGGCTGATAAAGAATCCATTCAAATATGAAAGAATAGAGGCTAAAGTAACTATCCATCCTTCTCTCTTGCTTACTGAAGAGCGCTCTACGTTTCATGAGGGTGACGAGTATTCAGGTGACTGGGAAAGGCTAGCTGAAATTAAGTTAAATCCTGAATGTGGAGTCAAGGCAAGGTTTGCAGTTGATCTTATTCGGCTTTGTCAAGCTATGAAGGAAAGAGTTTTGGTATTCAGTCAGTGGGTTGATCCATTGTTCTTGATAAGGGACCTGCTCAAATCTCAGTTTCAGTGGGTGGAAGGAGAGGAGGTTGTGTATATGGATGGAAAATGTGATGCAAAGCAACGCCAATCCTCAATGAGTTATTTCAATGATCCATCCTCCAAAGCAAAGGCAATGTTAGCTACAACAAAAGGTTGTAATGAAGGAATTAGTTTAGTTGGAGCTTCAAGGGTCGTACTGCTTGATGTTGCATGGAACCCATCTGTCGAGAGGCAAGCTATATCCCGAGCATACCGATTGGGACAGAAAAAGATTGTCTTCATATACCATCTCCTCATGGCTGGGGCAAGAGAAGAGGACAAATACAGCCGGCAAGTTGAGAAGCATCGGTTGTCTGAATTGGTATTTTCTTGTTCGAATACAGAAGCAGATGCCAATAAGAAACTCCCATCTGCGGTCGCAGAGGACAAGGTTTTGGAAGAGATGGTGCAGCATGAGAAACTCAAGCATATATTCCACAAGATAACATTACTGGATGAAGCCTCATATTTGGATGAAGATTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

1512

Amino Acids

169.76

Weight (kDa)

5.05

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 927 - 1143 3.6e-10 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 930 - 1254 3.2e-24 SNF2-related domain
Helicase_C PF00271 1312 - 1424 3.8e-16 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 3208, 3506, 4026
AccB1I GGYRCC 2 cut(s) 1729, 3659
AccIII TCCGGA 2 cut(s) 913, 2128
AciI CCGC 5 cut(s) 365, 1475, 3463, 3590, 4424
AclI AACGTT 1 cut(s) 148
AclWI GGATC 2 cut(s) 3989, 4115
AcoI YGGCCR 1 cut(s) 1305
AcsI RAATTY 6 cut(s) 1877, 2648, 2807, 2953, 3308, 3540
AcuI CTGAAG 6 cut(s) 1971, 2448, 2672, 2757, 3182, 3846
AdeI CACNNNGTG 1 cut(s) 2748
AfaI GTAC 7 cut(s) 1984, 2607, 2783, 2948, 2995, 3421, 4206
AfeI AGCGCT 1 cut(s) 3833
AfiI CCNNNNNNNGG 8 cut(s) 252, 2767, 2909, 3010, 3589, 3690, 3908, 4423
AgeI ACCGGT 1 cut(s) 2667
AhdI GACNNNNNGTC 1 cut(s) 2668
AjnI CCWGG 7 cut(s) 658, 1724, 2289, 2761, 2902, 3167, 3313
AjuI GAANNNNNNNTTGG 6 cut(s) 1176, 1208, 1302, 1334, 1359, 1391
Alw21I GWGCWC 1 cut(s) 3450
Alw26I GTCTC 2 cut(s) 1013, 1964
AlwI GGATC 2 cut(s) 3989, 4115
AlwNI CAGNNNCTG 2 cut(s) 1994, 2375
Ama87I CYCGRG 3 cut(s) 1010, 3683, 4254
Aor13HI TCCGGA 2 cut(s) 913, 2128
Aor51HI AGCGCT 1 cut(s) 3833
AoxI GGCC 6 cut(s) 98, 606, 1305, 2972, 3473, 3580
ApeKI GCWGC 4 cut(s) 873, 1813, 3095, 4459
ApoI RAATTY 6 cut(s) 1877, 2648, 2807, 2953, 3308, 3540
AseI ATTAAT 3 cut(s) 1035, 1263, 2082
AsiGI ACCGGT 1 cut(s) 2667
Asp700I GAANNNNTTC 3 cut(s) 1785, 3300, 3767
AspLEI GCGC 2 cut(s) 3405, 3834
AspS9I GGNCC 6 cut(s) 210, 911, 2973, 3483, 3535, 4015
AsuC2I CCSGG 3 cut(s) 2484, 3684, 3685
AsuHPI GGTGA 9 cut(s) 190, 950, 1235, 1418, 2167, 2888, 3481, 3863, 3878
AsuII TTCGAA 3 cut(s) 1205, 3276, 4385
AsuNHI GCTAGC 2 cut(s) 2033, 3880
AvaI CYCGRG 3 cut(s) 1010, 3683, 4254
AvaII GGWCC 5 cut(s) 210, 911, 3483, 3535, 4015
AxyI CCTNAGG 1 cut(s) 57
BaeGI GKGCMC 2 cut(s) 1732, 3342
BaeI ACNNNNGTAYC 4 cut(s) 960, 993, 2548, 2581
BanI GGYRCC 2 cut(s) 1729, 3659
BanII GRGCYC 2 cut(s) 3232, 3450
BbsI GAAGAC 4 cut(s) 2103, 2667, 3253, 4279
Bbv12I GWGCWC 1 cut(s) 3450
BbvI GCAGC 4 cut(s) 885, 1825, 3107, 4471
BceAI ACGGC 2 cut(s) 593, 1543
BcgI CGANNNNNNTGC 2 cut(s) 3329, 3363
BciT130I CCWGG 7 cut(s) 660, 1726, 2291, 2763, 2904, 3169, 3315
BciVI GTATCC 1 cut(s) 2549
BcnI CCSGG 3 cut(s) 2484, 3684, 3685
BcoDI GTCTC 2 cut(s) 1013, 1964
BfaI CTAG 5 cut(s) 252, 1611, 2034, 2387, 3881
BfmI CTRYAG 2 cut(s) 1752, 3710
BfoI RGCGCY 1 cut(s) 3835
BfuAI ACCTGC 3 cut(s) 3208, 3506, 4026
BfuI GTATCC 1 cut(s) 2549
BisI GCNGC 4 cut(s) 874, 1814, 3096, 4460
BlsI GCNGC 4 cut(s) 875, 1815, 3097, 4461
Bme18I GGWCC 5 cut(s) 210, 911, 3483, 3535, 4015
BmeRI GACNNNNNGTC 1 cut(s) 2668
BmeT110I CYCGRG 3 cut(s) 1010, 3683, 4254
BmgT120I GGNCC 6 cut(s) 210, 911, 2973, 3483, 3535, 4015
BmiI GGNNCC 8 cut(s) 1731, 2133, 2440, 2975, 3229, 3661, 4016, 4226
BmrI ACTGGG 5 cut(s) 1146, 1475, 1659, 3087, 3880
BmsI GCATC 7 cut(s) 1921, 2593, 2873, 3195, 4072, 4363, 4390
BmtI GCTAGC 2 cut(s) 2037, 3884
BmuI ACTGGG 5 cut(s) 1146, 1475, 1659, 3087, 3880
BoxI GACNNNNGTC 1 cut(s) 3360
BpiI GAAGAC 4 cut(s) 2103, 2667, 3253, 4279
BpmI CTGGAG 1 cut(s) 448
Bpu14I TTCGAA 3 cut(s) 1205, 3276, 4385
BpuEI CTTGAG 2 cut(s) 309, 4457
BpuMI CCSGG 3 cut(s) 2484, 3684, 3685
Bsa29I ATCGAT 1 cut(s) 1080
BsaAI YACGTR 1 cut(s) 2993
BsaJI CCNNGG 9 cut(s) 659, 1725, 2289, 2518, 2761, 3168, 3502, 3612, 3683
BsaWI WCCGGW 3 cut(s) 913, 2128, 2667
Bsc4I CCNNNNNNNGG 8 cut(s) 252, 2767, 2909, 3010, 3589, 3690, 3908, 4423
Bse118I RCCGGY 2 cut(s) 2667, 4338
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 5 cut(s) 2209, 3358, 3530, 3574, 4149
BseAI TCCGGA 2 cut(s) 913, 2128
BseBI CCWGG 7 cut(s) 660, 1726, 2291, 2763, 2904, 3169, 3315
BseCI ATCGAT 1 cut(s) 1080
BseDI CCNNGG 9 cut(s) 659, 1725, 2289, 2518, 2761, 3168, 3502, 3612, 3683
BseLI CCNNNNNNNGG 8 cut(s) 252, 2767, 2909, 3010, 3589, 3690, 3908, 4423
BseMI GCAATG 5 cut(s) 2209, 3358, 3530, 3574, 4149
BseMII CTCAG 6 cut(s) 1266, 1818, 2367, 2513, 3711, 4043
BseSI GKGCMC 2 cut(s) 1732, 3342
BseXI GCAGC 4 cut(s) 885, 1825, 3107, 4471
BseYI CCCAGC 2 cut(s) 3572, 4310
BsgI GTGCAG 3 cut(s) 2045, 2340, 4478
Bsh1285I CGRYCG 1 cut(s) 4428
BshFI GGCC 6 cut(s) 100, 608, 1307, 2974, 3475, 3582
BshNI GGYRCC 2 cut(s) 1729, 3659
BshTI ACCGGT 1 cut(s) 2667
BshVI ATCGAT 1 cut(s) 1080
BsiEI CGRYCG 1 cut(s) 4428
BsiHKAI GWGCWC 1 cut(s) 3450
BsiHKCI CYCGRG 3 cut(s) 1010, 3683, 4254
BsiSI CCGG 6 cut(s) 914, 2129, 2484, 2668, 3684, 4339
BslFI GGGAC 3 cut(s) 2765, 4028, 4284
BslI CCNNNNNNNGG 8 cut(s) 252, 2767, 2909, 3010, 3589, 3690, 3908, 4423
BsmAI GTCTC 2 cut(s) 1013, 1964
BsmBI CGTCTC 1 cut(s) 1964
BsmFI GGGAC 3 cut(s) 2765, 4028, 4284
BsmI GAATGC 4 cut(s) 841, 949, 1906, 3379
BsnI GGCC 6 cut(s) 100, 608, 1307, 2974, 3475, 3582
BsoBI CYCGRG 3 cut(s) 1010, 3683, 4254
Bsp119I TTCGAA 3 cut(s) 1205, 3276, 4385
Bsp1286I GDGCHC 4 cut(s) 1732, 3232, 3342, 3450
Bsp13I TCCGGA 2 cut(s) 913, 2128
BspACI CCGC 5 cut(s) 365, 1475, 3463, 3590, 4424
BspANI GGCC 6 cut(s) 100, 608, 1307, 2974, 3475, 3582
BspCNI CTCAG 6 cut(s) 1267, 1819, 2368, 2512, 3710, 4042
BspDI ATCGAT 1 cut(s) 1080
BspEI TCCGGA 2 cut(s) 913, 2128
BspHI TCATGA 6 cut(s) 856, 964, 1072, 1255, 1438, 3844
BspLI GGNNCC 8 cut(s) 1731, 2133, 2440, 2975, 3229, 3661, 4016, 4226
BspMI ACCTGC 3 cut(s) 3208, 3506, 4026
BspOI GCTAGC 2 cut(s) 2037, 3884
BspPI GGATC 2 cut(s) 3989, 4115
BspQI GCTCTTC 1 cut(s) 3822
BspT104I TTCGAA 3 cut(s) 1205, 3276, 4385
BspT107I GGYRCC 2 cut(s) 1729, 3659
BsrDI GCAATG 5 cut(s) 2209, 3358, 3530, 3574, 4149
BsrFI RCCGGY 2 cut(s) 2667, 4338
BssAI RCCGGY 2 cut(s) 2667, 4338
BssECI CCNNGG 9 cut(s) 659, 1725, 2289, 2518, 2761, 3168, 3502, 3612, 3683
BssT1I CCWWGG 3 cut(s) 2518, 3502, 3612
Bst2UI CCWGG 7 cut(s) 660, 1726, 2291, 2763, 2904, 3169, 3315
BstAPI GCANNNNNTGC 1 cut(s) 3926
BstBAI YACGTR 1 cut(s) 2993
BstBI TTCGAA 3 cut(s) 1205, 3276, 4385
BstC8I GCNNGC 8 cut(s) 2035, 2898, 2972, 3100, 3609, 3882, 4245, 4340
BstEII GGTNACC 1 cut(s) 1746
BstH2I RGCGCY 1 cut(s) 3835
BstHHI GCGC 2 cut(s) 3405, 3834
BstMAI GTCTC 2 cut(s) 1013, 1964
BstMCI CGRYCG 1 cut(s) 4428
BstMWI GCNNNNNNNGC 5 cut(s) 3555, 3564, 3676, 3926, 4148
BstNI CCWGG 7 cut(s) 660, 1726, 2291, 2763, 2904, 3169, 3315
BstNSI RCATGY 2 cut(s) 2900, 3650
BstPAI GACNNNNGTC 1 cut(s) 3360
BstPI GGTNACC 1 cut(s) 1746
BstSFI CTRYAG 2 cut(s) 1752, 3710
BstSLI GKGCMC 2 cut(s) 1732, 3342
BstV1I GCAGC 4 cut(s) 885, 1825, 3107, 4471
BstV2I GAAGAC 4 cut(s) 2103, 2667, 3253, 4279
Bsu15I ATCGAT 1 cut(s) 1080
Bsu36I CCTNAGG 1 cut(s) 57
BsuI GTATCC 1 cut(s) 2549
BsuRI GGCC 6 cut(s) 100, 608, 1307, 2974, 3475, 3582
BsuTUI ATCGAT 1 cut(s) 1080
BtsI GCAGTG 1 cut(s) 1537
BveI ACCTGC 3 cut(s) 3208, 3506, 4026
Cac8I GCNNGC 8 cut(s) 2035, 2898, 2972, 3100, 3609, 3882, 4245, 4340
CaiI CAGNNNCTG 2 cut(s) 1994, 2375
CciI TCATGA 6 cut(s) 856, 964, 1072, 1255, 1438, 3844
CfoI GCGC 2 cut(s) 3405, 3834
Cfr10I RCCGGY 2 cut(s) 2667, 4338
Cfr13I GGNCC 6 cut(s) 210, 911, 2973, 3483, 3535, 4015
Cfr9I CCCGGG 1 cut(s) 3683
ClaI ATCGAT 1 cut(s) 1080
CseI GACGC 2 cut(s) 1981, 2361
Csp6I GTAC 7 cut(s) 1983, 2606, 2782, 2947, 2994, 3420, 4205
CspAI ACCGGT 1 cut(s) 2667
CviQI GTAC 7 cut(s) 1983, 2606, 2782, 2947, 2994, 3420, 4205
DraIII CACNNNGTG 1 cut(s) 2748
DriI GACNNNNNGTC 1 cut(s) 2668
EaeI YGGCCR 1 cut(s) 1305
Eam1105I GACNNNNNGTC 1 cut(s) 2668
Ecl136II GAGCTC 1 cut(s) 3448
Eco130I CCWWGG 3 cut(s) 2518, 3502, 3612
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 2 cut(s) 3232, 3450
Eco32I GATATC 1 cut(s) 1078
Eco47I GGWCC 5 cut(s) 210, 911, 3483, 3535, 4015
Eco47III AGCGCT 1 cut(s) 3833
Eco53kI GAGCTC 1 cut(s) 3448
Eco57I CTGAAG 6 cut(s) 1971, 2448, 2672, 2757, 3182, 3846
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 3 cut(s) 1010, 3683, 4254
Eco91I GGTNACC 1 cut(s) 1746
EcoICRI GAGCTC 1 cut(s) 3448
EcoO109I RGGNCCY 2 cut(s) 2973, 4015
EcoO65I GGTNACC 1 cut(s) 1746
EcoRII CCWGG 7 cut(s) 658, 1724, 2289, 2761, 2902, 3167, 3313
EcoRV GATATC 1 cut(s) 1078
EcoT14I CCWWGG 3 cut(s) 2518, 3502, 3612
EcoT22I ATGCAT 1 cut(s) 2888
EcoT38I GRGCYC 2 cut(s) 3232, 3450
ErhI CCWWGG 3 cut(s) 2518, 3502, 3612
Esp3I CGTCTC 1 cut(s) 1964
FalI AAGNNNNNCTT 4 cut(s) 3663, 3695, 4271, 4303
FaqI GGGAC 3 cut(s) 2765, 4028, 4284
FauI CCCGC 1 cut(s) 1468
FauNDI CATATG 5 cut(s) 234, 1891, 2113, 2505, 2561
Fnu4HI GCNGC 4 cut(s) 874, 1814, 3096, 4460
FriOI GRGCYC 2 cut(s) 3232, 3450
Fsp4HI GCNGC 4 cut(s) 874, 1814, 3096, 4460
FspBI CTAG 5 cut(s) 252, 1611, 2034, 2387, 3881
GlaI GCGC 2 cut(s) 3404, 3833
GluI GCNGC 4 cut(s) 874, 1814, 3096, 4460
GsaI CCCAGC 2 cut(s) 3576, 4314
GsuI CTGGAG 1 cut(s) 448
HaeII RGCGCY 1 cut(s) 3835
HaeIII GGCC 6 cut(s) 100, 608, 1307, 2974, 3475, 3582
HapII CCGG 6 cut(s) 914, 2129, 2484, 2668, 3684, 4339
HgaI GACGC 2 cut(s) 1981, 2361
HhaI GCGC 2 cut(s) 3405, 3834
Hin6I GCGC 2 cut(s) 3403, 3832
HinP1I GCGC 2 cut(s) 3403, 3832
HindIII AAGCTT 1 cut(s) 3677
HpaII CCGG 6 cut(s) 914, 2129, 2484, 2668, 3684, 4339
HphI GGTGA 9 cut(s) 190, 950, 1235, 1418, 2167, 2888, 3481, 3863, 3878
Hpy166II GTNNAC 3 cut(s) 672, 2015, 3652
Hpy8I GTNNAC 3 cut(s) 672, 2015, 3652
HpyCH4IV ACGT 4 cut(s) 148, 1240, 2992, 3839
HpyF10VI GCNNNNNNNGC 5 cut(s) 3555, 3564, 3676, 3926, 4148
HpySE526I ACGT 4 cut(s) 148, 1240, 2992, 3839
HspAI GCGC 2 cut(s) 3403, 3832
Kpn2I TCCGGA 2 cut(s) 913, 2128
KroI GCCGGC 1 cut(s) 4338
KroNI GCCGGC 1 cut(s) 4340
LguI GCTCTTC 1 cut(s) 3822
LmnI GCTCC 8 cut(s) 2161, 2305, 2623, 2992, 3006, 3227, 3445, 4190
Lsp1109I GCAGC 4 cut(s) 885, 1825, 3107, 4471
LweI GCATC 7 cut(s) 1921, 2593, 2873, 3195, 4072, 4363, 4390
MaeI CTAG 5 cut(s) 252, 1611, 2034, 2387, 3881
MaeII ACGT 4 cut(s) 148, 1240, 2992, 3839
MaeIII GTNAC 9 cut(s) 590, 638, 1746, 2262, 2494, 3362, 3796, 3851, 3866
MhlI GDGCHC 4 cut(s) 1732, 3232, 3342, 3450
MmeI TCCRAC 3 cut(s) 237, 2832, 4168
Mph1103I ATGCAT 1 cut(s) 2888
MroI TCCGGA 2 cut(s) 913, 2128
MroNI GCCGGC 1 cut(s) 4338
MroXI GAANNNNTTC 3 cut(s) 1785, 3300, 3767
MslI CAYNNNNRTG 3 cut(s) 237, 2793, 3849
MspI CCGG 6 cut(s) 914, 2129, 2484, 2668, 3684, 4339
Mva1269I GAATGC 4 cut(s) 841, 949, 1906, 3379
MvaI CCWGG 7 cut(s) 660, 1726, 2291, 2763, 2904, 3169, 3315
MwoI GCNNNNNNNGC 5 cut(s) 3555, 3564, 3676, 3926, 4148
NaeI GCCGGC 1 cut(s) 4340
NciI CCSGG 3 cut(s) 2484, 3684, 3685
NdeI CATATG 5 cut(s) 234, 1891, 2113, 2505, 2561
NgoMIV GCCGGC 1 cut(s) 4338
NheI GCTAGC 2 cut(s) 2033, 3880
NlaIV GGNNCC 8 cut(s) 1731, 2133, 2440, 2975, 3229, 3661, 4016, 4226
NmeAIII GCCGAG 1 cut(s) 3730
NmuCI GTSAC 4 cut(s) 638, 3362, 3851, 3866
NsiI ATGCAT 1 cut(s) 2888
NspI RCATGY 2 cut(s) 2900, 3650
NspV TTCGAA 3 cut(s) 1205, 3276, 4385
PaeI GCATGC 1 cut(s) 2900
PagI TCATGA 6 cut(s) 856, 964, 1072, 1255, 1438, 3844
PceI AGGCCT 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 3822
PctI GAATGC 4 cut(s) 841, 949, 1906, 3379
PdiI GCCGGC 1 cut(s) 4340
PdmI GAANNNNTTC 3 cut(s) 1785, 3300, 3767
PflFI GACNNNGTC 1 cut(s) 2414
PinAI ACCGGT 1 cut(s) 2667
PkrI GCNGC 4 cut(s) 875, 1815, 3097, 4461
Ppu21I YACGTR 1 cut(s) 2993
PpuMI RGGWCCY 1 cut(s) 4015
PshAI GACNNNNGTC 1 cut(s) 3360
PshBI ATTAAT 3 cut(s) 1035, 1263, 2082
Psp124BI GAGCTC 1 cut(s) 3450
Psp1406I AACGTT 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 4015
Psp6I CCWGG 7 cut(s) 658, 1724, 2289, 2761, 2902, 3167, 3313
PspEI GGTNACC 1 cut(s) 1746
PspFI CCCAGC 2 cut(s) 3572, 4310
PspGI CCWGG 7 cut(s) 658, 1724, 2289, 2761, 2902, 3167, 3313
PspN4I GGNNCC 8 cut(s) 1731, 2133, 2440, 2975, 3229, 3661, 4016, 4226
PspPI GGNCC 6 cut(s) 210, 911, 2973, 3483, 3535, 4015
PspPPI RGGWCCY 1 cut(s) 4015
PstNI CAGNNNCTG 2 cut(s) 1994, 2375
PsyI GACNNNGTC 1 cut(s) 2414
RsaI GTAC 7 cut(s) 1984, 2607, 2783, 2948, 2995, 3421, 4206
RsaNI GTAC 7 cut(s) 1983, 2606, 2782, 2947, 2994, 3420, 4205
RseI CAYNNNNRTG 3 cut(s) 237, 2793, 3849
SacI GAGCTC 1 cut(s) 3450
SapI GCTCTTC 1 cut(s) 3822
SatI GCNGC 4 cut(s) 874, 1814, 3096, 4460
Sau96I GGNCC 6 cut(s) 210, 911, 2973, 3483, 3535, 4015
SduI GDGCHC 4 cut(s) 1732, 3232, 3342, 3450
SfaNI GCATC 7 cut(s) 1921, 2593, 2873, 3195, 4072, 4363, 4390
SfcI CTRYAG 2 cut(s) 1752, 3710
SfuI TTCGAA 3 cut(s) 1205, 3276, 4385
SinI GGWCC 5 cut(s) 210, 911, 3483, 3535, 4015
SmaI CCCGGG 1 cut(s) 3685
SmiMI CAYNNNNRTG 3 cut(s) 237, 2793, 3849
SmlI CTYRAG 2 cut(s) 324, 4472
SmoI CTYRAG 2 cut(s) 324, 4472
SphI GCATGC 1 cut(s) 2900
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 5 cut(s) 365, 1475, 3463, 3590, 4424
SspMI CTAG 5 cut(s) 252, 1611, 2034, 2387, 3881
SstI GAGCTC 1 cut(s) 3450
StuI AGGCCT 1 cut(s) 100
StyI CCWWGG 3 cut(s) 2518, 3502, 3612
TaiI ACGT 4 cut(s) 151, 1243, 2995, 3842
TseFI GTSAC 4 cut(s) 638, 3362, 3851, 3866
TseI GCWGC 4 cut(s) 873, 1813, 3095, 4459
Tsp45I GTSAC 4 cut(s) 638, 3362, 3851, 3866
TspGWI ACGGA 1 cut(s) 1753
TspMI CCCGGG 1 cut(s) 3683
Tth111I GACNNNGTC 1 cut(s) 2414
VpaK11BI GGWCC 5 cut(s) 210, 911, 3483, 3535, 4015
VspI ATTAAT 3 cut(s) 1035, 1263, 2082
XapI RAATTY 6 cut(s) 1877, 2648, 2807, 2953, 3308, 3540
XceI RCATGY 2 cut(s) 2900, 3650
XmaI CCCGGG 1 cut(s) 3683
XmnI GAANNNNTTC 3 cut(s) 1785, 3300, 3767
XspI CTAG 5 cut(s) 252, 1611, 2034, 2387, 3881
Zsp2I ATGCAT 1 cut(s) 2888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.