Rorug02G0417500

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001072
Physical Location & Seq
Forward (+)
53694766 .. 53695499
734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0417500.1

Sequence Viewer

Length: 189 bp
ATGGGTAAGGTTCACGGTTCGTTGGCTCGTGCCGGAAAGGTGAGAGGTCAGACCCCAAAGGTGGCCAAGCAGGACAAGAAGAAGAAGCCCAGAGGCCGCGCCCACAAGAGGATGCAGTACAACAGGAGATTCGTCACTGCCGTTGTTGGATTCGGGAAGAAGAGGGGACCTAACTCGTCTGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

62

Amino Acids

6.93

Weight (kDa)

12.0

Isoelectric Point (pI)

22.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S30 PF04758 3 - 59 8.9e-31 Ribosomal protein S30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 61, 108
AoxI GGCC 2 cut(s) 63, 94
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 65
BauI CACGAG 1 cut(s) 27
BceAI ACGGC 1 cut(s) 125
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 168
BmsI GCATC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 108
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 61, 108
BseMII CTCAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 65, 96
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 61, 108
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 2 cut(s) 65, 96
BspACI CCGC 1 cut(s) 97
BspANI GGCC 2 cut(s) 65, 96
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 168
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 101
BstUI CGCG 1 cut(s) 99
BsuRI GGCC 2 cut(s) 65, 96
BtsCI GGATG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 118
CviJI RGCY 4 cut(s) 26, 65, 88, 96
CviKI_1 RGCY 4 cut(s) 26, 65, 88, 96
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 167
FaqI GGGAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 97
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 97
HaeIII GGCC 2 cut(s) 65, 96
HapII CCGG 1 cut(s) 33
HhaI GCGC 1 cut(s) 101
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 2 cut(s) 129, 150
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 2 cut(s) 51, 181
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 180
HspAI GCGC 1 cut(s) 99
LpnPI CCDG 4 cut(s) 46, 56, 103, 109
LweI GCATC 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 4 cut(s) 91, 94, 169, 172
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 4 cut(s) 38, 86, 102, 156
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 2 cut(s) 129, 150
PkrI GCNGC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 167
PspPPI RGGWCCY 1 cut(s) 167
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SatI GCNGC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 167
SetI ASST 5 cut(s) 12, 42, 49, 63, 172
SfaNI GCATC 1 cut(s) 102
SinI GGWCC 1 cut(s) 167
SsiI CCGC 1 cut(s) 97
TaaI ACNGT 1 cut(s) 17
TatI WGTACW 1 cut(s) 117
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 2 cut(s) 129, 150
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.