SNF2 domain-containing protein CLASSY
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1721 |
| Acc36I | ACCTGC | 1 cut(s) | 1526 |
| AccB1I | GGYRCC | 1 cut(s) | 112 |
| AccI | GTMKAC | 2 cut(s) | 701, 2511 |
| AciI | CCGC | 2 cut(s) | 587, 1082 |
| AclWI | GGATC | 4 cut(s) | 999, 2222, 2412, 2759 |
| AcoI | YGGCCR | 1 cut(s) | 718 |
| AcuI | CTGAAG | 3 cut(s) | 501, 1664, 2709 |
| AcyI | GRCGYC | 1 cut(s) | 113 |
| AfaI | GTAC | 8 cut(s) | 271, 473, 688, 1347, 1480, 1735, 2183, 2586 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1649, 2331, 2479, 2552, 2655 |
| AflIII | ACRYGT | 1 cut(s) | 1658 |
| AgeI | ACCGGT | 2 cut(s) | 556, 1407 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1408, 1444 |
| AjiI | CACGTC | 1 cut(s) | 1661 |
| AjnI | CCWGG | 7 cut(s) | 935, 1498, 1642, 1748, 1916, 2044, 2472 |
| Alw21I | GWGCWC | 1 cut(s) | 935 |
| Alw26I | GTCTC | 6 cut(s) | 257, 402, 761, 824, 2429, 2471 |
| Alw44I | GTGCAC | 1 cut(s) | 931 |
| AlwI | GGATC | 4 cut(s) | 999, 2222, 2412, 2759 |
| Ama87I | CYCGRG | 1 cut(s) | 2324 |
| AoxI | GGCC | 5 cut(s) | 718, 1712, 1864, 2204, 2219 |
| ApaLI | GTGCAC | 1 cut(s) | 931 |
| ApeKI | GCWGC | 5 cut(s) | 1835, 2734, 2851, 2999, 3017 |
| AseI | ATTAAT | 2 cut(s) | 1206, 2637 |
| AsiGI | ACCGGT | 2 cut(s) | 556, 1407 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2613, 2700, 2756 |
| AspLEI | GCGC | 3 cut(s) | 115, 1872, 2739 |
| AspS9I | GGNCC | 1 cut(s) | 554 |
| AsuC2I | CCSGG | 3 cut(s) | 1819, 2325, 2326 |
| AsuHPI | GGTGA | 4 cut(s) | 335, 431, 1088, 1738 |
| AsuII | TTCGAA | 1 cut(s) | 542 |
| AvaI | CYCGRG | 1 cut(s) | 2324 |
| AvaII | GGWCC | 1 cut(s) | 554 |
| BaeGI | GKGCMC | 1 cut(s) | 935 |
| BalI | TGGCCA | 1 cut(s) | 720 |
| BanI | GGYRCC | 1 cut(s) | 112 |
| BbsI | GAAGAC | 3 cut(s) | 1407, 1601, 1661 |
| Bbv12I | GWGCWC | 1 cut(s) | 935 |
| BbvCI | CCTCAGC | 1 cut(s) | 908 |
| BbvI | GCAGC | 5 cut(s) | 1847, 2746, 2838, 2986, 3004 |
| BceAI | ACGGC | 2 cut(s) | 1022, 2603 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2060, 2094 |
| BciT130I | CCWGG | 7 cut(s) | 937, 1500, 1644, 1750, 1918, 2046, 2474 |
| BciVI | GTATCC | 2 cut(s) | 1530, 2503 |
| BclI | TGATCA | 1 cut(s) | 727 |
| BcnI | CCSGG | 3 cut(s) | 1819, 2325, 2326 |
| BcoDI | GTCTC | 6 cut(s) | 257, 402, 761, 824, 2429, 2471 |
| BfaI | CTAG | 7 cut(s) | 27, 954, 971, 1127, 1191, 2009, 2268 |
| BfmI | CTRYAG | 4 cut(s) | 21, 303, 757, 3018 |
| BfoI | RGCGCY | 3 cut(s) | 116, 1873, 2740 |
| BfuAI | ACCTGC | 1 cut(s) | 1526 |
| BfuI | GTATCC | 2 cut(s) | 1530, 2503 |
| BglII | AGATCT | 1 cut(s) | 1163 |
| BisI | GCNGC | 6 cut(s) | 1082, 1836, 2735, 2852, 3000, 3018 |
| BlsI | GCNGC | 6 cut(s) | 1083, 1837, 2736, 2853, 3001, 3019 |
| Bme18I | GGWCC | 1 cut(s) | 554 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1408, 1444 |
| BmeT110I | CYCGRG | 1 cut(s) | 2324 |
| BmgBI | CACGTC | 1 cut(s) | 1661 |
| BmgT120I | GGNCC | 1 cut(s) | 554 |
| BmiI | GGNNCC | 4 cut(s) | 114, 555, 2302, 2870 |
| BmsI | GCATC | 9 cut(s) | 519, 787, 896, 940, 1333, 1613, 1944, 2587, 2965 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1670 |
| BpiI | GAAGAC | 3 cut(s) | 1407, 1601, 1661 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 92, 124, 987, 1019 |
| BpmI | CTGGAG | 3 cut(s) | 1206, 2010, 2495 |
| Bpu10I | CCTNAGC | 1 cut(s) | 908 |
| Bpu14I | TTCGAA | 1 cut(s) | 542 |
| BpuEI | CTTGAG | 2 cut(s) | 1826, 3053 |
| BpuMI | CCSGG | 3 cut(s) | 1819, 2325, 2326 |
| BsaBI | GATNNNNATC | 1 cut(s) | 750 |
| BsaHI | GRCGYC | 1 cut(s) | 113 |
| BsaI | GGTCTC | 1 cut(s) | 824 |
| BsaJI | CCNNGG | 5 cut(s) | 936, 1749, 1939, 2324, 2781 |
| BsaWI | WCCGGW | 2 cut(s) | 556, 1407 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 600, 630, 1204, 1234, 1322, 1352 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1649, 2331, 2479, 2552, 2655 |
| Bse118I | RCCGGY | 3 cut(s) | 556, 1407, 1565 |
| Bse1I | ACTGG | 4 cut(s) | 1097, 1223, 2216, 3102 |
| Bse3DI | GCAATG | 1 cut(s) | 2907 |
| Bse8I | GATNNNNATC | 1 cut(s) | 750 |
| BseBI | CCWGG | 7 cut(s) | 937, 1500, 1644, 1750, 1918, 2046, 2474 |
| BseDI | CCNNGG | 5 cut(s) | 936, 1749, 1939, 2324, 2781 |
| BseJI | GATNNNNATC | 1 cut(s) | 750 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1649, 2331, 2479, 2552, 2655 |
| BseMI | GCAATG | 1 cut(s) | 2907 |
| BseMII | CTCAG | 6 cut(s) | 570, 899, 1184, 1253, 2160, 2687 |
| BseNI | ACTGG | 4 cut(s) | 1097, 1223, 2216, 3102 |
| BseRI | GAGGAG | 3 cut(s) | 420, 1719, 1772 |
| BseSI | GKGCMC | 1 cut(s) | 935 |
| BseXI | GCAGC | 5 cut(s) | 1847, 2746, 2838, 2986, 3004 |
| BseYI | CCCAGC | 2 cut(s) | 2912, 3013 |
| BsgI | GTGCAG | 3 cut(s) | 899, 1554, 1962 |
| BshFI | GGCC | 5 cut(s) | 720, 1714, 1866, 2206, 2221 |
| BshNI | GGYRCC | 1 cut(s) | 112 |
| BshTI | ACCGGT | 2 cut(s) | 556, 1407 |
| BsiHKAI | GWGCWC | 1 cut(s) | 935 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2324 |
| BsiSI | CCGG | 5 cut(s) | 557, 1408, 1566, 1818, 2325 |
| BsiWI | CGTACG | 1 cut(s) | 2584 |
| BslFI | GGGAC | 3 cut(s) | 567, 1202, 1502 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1649, 2331, 2479, 2552, 2655 |
| BsmAI | GTCTC | 6 cut(s) | 257, 402, 761, 824, 2429, 2471 |
| BsmBI | CGTCTC | 1 cut(s) | 2471 |
| BsmFI | GGGAC | 3 cut(s) | 567, 1202, 1502 |
| BsmI | GAATGC | 2 cut(s) | 149, 589 |
| BsnI | GGCC | 5 cut(s) | 720, 1714, 1866, 2206, 2221 |
| Bso31I | GGTCTC | 1 cut(s) | 824 |
| BsoBI | CYCGRG | 1 cut(s) | 2324 |
| Bsp119I | TTCGAA | 1 cut(s) | 542 |
| Bsp1286I | GDGCHC | 1 cut(s) | 935 |
| Bsp1407I | TGTACA | 1 cut(s) | 2181 |
| Bsp143I | GATC | 8 cut(s) | 727, 991, 1163, 1332, 1376, 2214, 2404, 2764 |
| BspACI | CCGC | 2 cut(s) | 587, 1082 |
| BspANI | GGCC | 5 cut(s) | 720, 1714, 1866, 2206, 2221 |
| BspCNI | CTCAG | 6 cut(s) | 571, 900, 1183, 1252, 2159, 2686 |
| BspHI | TCATGA | 1 cut(s) | 1435 |
| BspLI | GGNNCC | 4 cut(s) | 114, 555, 2302, 2870 |
| BspMAI | CTGCAG | 2 cut(s) | 761, 3022 |
| BspMI | ACCTGC | 1 cut(s) | 1526 |
| BspPI | GGATC | 4 cut(s) | 999, 2222, 2412, 2759 |
| BspT104I | TTCGAA | 1 cut(s) | 542 |
| BspT107I | GGYRCC | 1 cut(s) | 112 |
| BspTNI | GGTCTC | 1 cut(s) | 824 |
| BsrDI | GCAATG | 1 cut(s) | 2907 |
| BsrFI | RCCGGY | 3 cut(s) | 556, 1407, 1565 |
| BsrGI | TGTACA | 1 cut(s) | 2181 |
| BsrI | ACTGG | 4 cut(s) | 1097, 1223, 2216, 3102 |
| BssAI | RCCGGY | 3 cut(s) | 556, 1407, 1565 |
| BssECI | CCNNGG | 5 cut(s) | 936, 1749, 1939, 2324, 2781 |
| BssMI | GATC | 8 cut(s) | 727, 991, 1163, 1332, 1376, 2214, 2404, 2764 |
| BssNI | GRCGYC | 1 cut(s) | 113 |
| BssT1I | CCWWGG | 2 cut(s) | 1939, 2781 |
| Bst2UI | CCWGG | 7 cut(s) | 937, 1500, 1644, 1750, 1918, 2046, 2474 |
| Bst4CI | ACNGT | 7 cut(s) | 329, 419, 686, 699, 1216, 1483, 2939 |
| Bst6I | CTCTTC | 6 cut(s) | 387, 520, 1059, 1749, 2919, 3039 |
| BstACI | GRCGYC | 1 cut(s) | 113 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1311 |
| BstAUI | TGTACA | 1 cut(s) | 2181 |
| BstBI | TTCGAA | 1 cut(s) | 542 |
| BstC8I | GCNNGC | 5 cut(s) | 17, 841, 1533, 1712, 1868 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1647, 2653 |
| BstH2I | RGCGCY | 3 cut(s) | 116, 1873, 2740 |
| BstHHI | GCGC | 3 cut(s) | 115, 1872, 2739 |
| BstKTI | GATC | 8 cut(s) | 730, 994, 1166, 1335, 1379, 2217, 2407, 2767 |
| BstMAI | GTCTC | 6 cut(s) | 257, 402, 761, 824, 2429, 2471 |
| BstMBI | GATC | 8 cut(s) | 727, 991, 1163, 1332, 1376, 2214, 2404, 2764 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 913, 1311, 2009, 2273, 3023 |
| BstNI | CCWGG | 7 cut(s) | 937, 1500, 1644, 1750, 1918, 2046, 2474 |
| BstNSI | RCATGY | 4 cut(s) | 534, 1640, 2229, 2291 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1670 |
| BstSFI | CTRYAG | 4 cut(s) | 21, 303, 757, 3018 |
| BstSLI | GKGCMC | 1 cut(s) | 935 |
| BstV1I | GCAGC | 5 cut(s) | 1847, 2746, 2838, 2986, 3004 |
| BstV2I | GAAGAC | 3 cut(s) | 1407, 1601, 1661 |
| BstX2I | RGATCY | 2 cut(s) | 1163, 2404 |
| BstYI | RGATCY | 2 cut(s) | 1163, 2404 |
| BsuI | GTATCC | 2 cut(s) | 1530, 2503 |
| BsuRI | GGCC | 5 cut(s) | 720, 1714, 1866, 2206, 2221 |
| BtrI | CACGTC | 1 cut(s) | 1661 |
| BtsI | GCAGTG | 3 cut(s) | 247, 754, 2236 |
| BtsIMutI | CAGTG | 4 cut(s) | 247, 334, 754, 2236 |
| BveI | ACCTGC | 1 cut(s) | 1526 |
| Cac8I | GCNNGC | 5 cut(s) | 17, 841, 1533, 1712, 1868 |
| CciI | TCATGA | 1 cut(s) | 1435 |
| CfoI | GCGC | 3 cut(s) | 115, 1872, 2739 |
| Cfr10I | RCCGGY | 3 cut(s) | 556, 1407, 1565 |
| Cfr13I | GGNCC | 1 cut(s) | 554 |
| Cfr9I | CCCGGG | 1 cut(s) | 2324 |
| Csp6I | GTAC | 8 cut(s) | 270, 472, 687, 1346, 1479, 1734, 2182, 2585 |
| CspAI | ACCGGT | 2 cut(s) | 556, 1407 |
| CviQI | GTAC | 8 cut(s) | 270, 472, 687, 1346, 1479, 1734, 2182, 2585 |
| DinI | GGCGCC | 1 cut(s) | 114 |
| DpnI | GATC | 8 cut(s) | 729, 993, 1165, 1334, 1378, 2216, 2406, 2766 |
| DpnII | GATC | 8 cut(s) | 727, 991, 1163, 1332, 1376, 2214, 2404, 2764 |
| DraI | TTTAAA | 3 cut(s) | 1141, 1765, 2419 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1408, 1444 |
| EaeI | YGGCCR | 1 cut(s) | 718 |
| Eam1104I | CTCTTC | 6 cut(s) | 387, 520, 1059, 1749, 2919, 3039 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1408, 1444 |
| EarI | CTCTTC | 6 cut(s) | 387, 520, 1059, 1749, 2919, 3039 |
| Eco130I | CCWWGG | 2 cut(s) | 1939, 2781 |
| Eco147I | AGGCCT | 1 cut(s) | 2221 |
| Eco31I | GGTCTC | 1 cut(s) | 824 |
| Eco47I | GGWCC | 1 cut(s) | 554 |
| Eco57I | CTGAAG | 3 cut(s) | 501, 1664, 2709 |
| Eco88I | CYCGRG | 1 cut(s) | 2324 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1647, 2653 |
| EcoRI | GAATTC | 3 cut(s) | 790, 1572, 2388 |
| EcoRII | CCWGG | 7 cut(s) | 935, 1498, 1642, 1748, 1916, 2044, 2472 |
| EcoT14I | CCWWGG | 2 cut(s) | 1939, 2781 |
| EcoT22I | ATGCAT | 3 cut(s) | 149, 532, 1628 |
| EgeI | GGCGCC | 1 cut(s) | 114 |
| EheI | GGCGCC | 1 cut(s) | 114 |
| ErhI | CCWWGG | 2 cut(s) | 1939, 2781 |
| Esp3I | CGTCTC | 1 cut(s) | 2471 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 499, 531, 697, 729, 2688, 2720 |
| FaqI | GGGAC | 3 cut(s) | 567, 1202, 1502 |
| FauNDI | CATATG | 2 cut(s) | 1245, 2097 |
| FbaI | TGATCA | 1 cut(s) | 727 |
| FblI | GTMKAC | 2 cut(s) | 701, 2511 |
| Fnu4HI | GCNGC | 6 cut(s) | 1082, 1836, 2735, 2852, 3000, 3018 |
| Fsp4HI | GCNGC | 6 cut(s) | 1082, 1836, 2735, 2852, 3000, 3018 |
| FspBI | CTAG | 7 cut(s) | 27, 954, 971, 1127, 1191, 2009, 2268 |
| GlaI | GCGC | 3 cut(s) | 114, 1871, 2738 |
| GluI | GCNGC | 6 cut(s) | 1082, 1836, 2735, 2852, 3000, 3018 |
| GsaI | CCCAGC | 2 cut(s) | 2916, 3017 |
| GsuI | CTGGAG | 3 cut(s) | 1206, 2010, 2495 |
| HaeII | RGCGCY | 3 cut(s) | 116, 1873, 2740 |
| HaeIII | GGCC | 5 cut(s) | 720, 1714, 1866, 2206, 2221 |
| HapII | CCGG | 5 cut(s) | 557, 1408, 1566, 1818, 2325 |
| HhaI | GCGC | 3 cut(s) | 115, 1872, 2739 |
| Hin1I | GRCGYC | 1 cut(s) | 113 |
| Hin6I | GCGC | 3 cut(s) | 113, 1870, 2737 |
| HinP1I | GCGC | 3 cut(s) | 113, 1870, 2737 |
| HincII | GTYRAC | 1 cut(s) | 2512 |
| HindII | GTYRAC | 1 cut(s) | 2512 |
| HindIII | AAGCTT | 2 cut(s) | 914, 2001 |
| HpaII | CCGG | 5 cut(s) | 557, 1408, 1566, 1818, 2325 |
| HphI | GGTGA | 4 cut(s) | 335, 431, 1088, 1738 |
| Hpy166II | GTNNAC | 6 cut(s) | 58, 702, 933, 2234, 2293, 2512 |
| Hpy8I | GTNNAC | 6 cut(s) | 58, 702, 933, 2234, 2293, 2512 |
| HpyCH4III | ACNGT | 7 cut(s) | 329, 419, 686, 699, 1216, 1483, 2939 |
| HpyCH4IV | ACGT | 2 cut(s) | 1660, 2134 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 913, 1311, 2009, 2273, 3023 |
| HpySE526I | ACGT | 2 cut(s) | 1660, 2134 |
| Hsp92I | GRCGYC | 1 cut(s) | 113 |
| HspAI | GCGC | 3 cut(s) | 113, 1870, 2737 |
| KasI | GGCGCC | 1 cut(s) | 112 |
| Ksp22I | TGATCA | 1 cut(s) | 727 |
| Kzo9I | GATC | 8 cut(s) | 727, 991, 1163, 1332, 1376, 2214, 2404, 2764 |
| LmnI | GCTCC | 7 cut(s) | 1008, 1363, 1732, 2264, 2659, 2717, 2834 |
| Lsp1109I | GCAGC | 5 cut(s) | 1847, 2746, 2838, 2986, 3004 |
| LweI | GCATC | 9 cut(s) | 519, 787, 896, 940, 1333, 1613, 1944, 2587, 2965 |
| MaeI | CTAG | 7 cut(s) | 27, 954, 971, 1127, 1191, 2009, 2268 |
| MaeII | ACGT | 2 cut(s) | 1660, 2134 |
| MaeIII | GTNAC | 8 cut(s) | 323, 693, 818, 1234, 1949, 2364, 2810, 2860 |
| MalI | GATC | 8 cut(s) | 729, 993, 1165, 1334, 1378, 2216, 2406, 2766 |
| MboI | GATC | 8 cut(s) | 727, 991, 1163, 1332, 1376, 2214, 2404, 2764 |
| MfeI | CAATTG | 2 cut(s) | 670, 2280 |
| MflI | RGATCY | 2 cut(s) | 1163, 2404 |
| MhlI | GDGCHC | 1 cut(s) | 935 |
| MlsI | TGGCCA | 1 cut(s) | 720 |
| MluNI | TGGCCA | 1 cut(s) | 720 |
| Mly113I | GGCGCC | 1 cut(s) | 113 |
| MlyI | GAGTC | 5 cut(s) | 404, 1181, 1433, 1564, 2101 |
| MmeI | TCCRAC | 1 cut(s) | 2812 |
| Mox20I | TGGCCA | 1 cut(s) | 720 |
| Mph1103I | ATGCAT | 3 cut(s) | 149, 532, 1628 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2613, 2700, 2756 |
| MscI | TGGCCA | 1 cut(s) | 720 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1467, 1473, 1530 |
| Msp20I | TGGCCA | 1 cut(s) | 720 |
| MspA1I | CMGCKG | 1 cut(s) | 3017 |
| MspI | CCGG | 5 cut(s) | 557, 1408, 1566, 1818, 2325 |
| MunI | CAATTG | 2 cut(s) | 670, 2280 |
| Mva1269I | GAATGC | 2 cut(s) | 149, 589 |
| MvaI | CCWGG | 7 cut(s) | 937, 1500, 1644, 1750, 1918, 2046, 2474 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 913, 1311, 2009, 2273, 3023 |
| NarI | GGCGCC | 1 cut(s) | 113 |
| NciI | CCSGG | 3 cut(s) | 1819, 2325, 2326 |
| NdeI | CATATG | 2 cut(s) | 1245, 2097 |
| NdeII | GATC | 8 cut(s) | 727, 991, 1163, 1332, 1376, 2214, 2404, 2764 |
| NlaIV | GGNNCC | 4 cut(s) | 114, 555, 2302, 2870 |
| NmeAIII | GCCGAG | 2 cut(s) | 89, 455 |
| NmuCI | GTSAC | 3 cut(s) | 323, 693, 818 |
| NsiI | ATGCAT | 3 cut(s) | 149, 532, 1628 |
| NspI | RCATGY | 4 cut(s) | 534, 1640, 2229, 2291 |
| NspV | TTCGAA | 1 cut(s) | 542 |
| PagI | TCATGA | 1 cut(s) | 1435 |
| PceI | AGGCCT | 1 cut(s) | 2221 |
| PctI | GAATGC | 2 cut(s) | 149, 589 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2613, 2700, 2756 |
| PfeI | GAWTC | 5 cut(s) | 182, 299, 434, 977, 2549 |
| Pfl23II | CGTACG | 1 cut(s) | 2584 |
| PflFI | GACNNNGTC | 1 cut(s) | 1214 |
| PfoI | TCCNGGA | 2 cut(s) | 1817, 1916 |
| PinAI | ACCGGT | 2 cut(s) | 556, 1407 |
| PkrI | GCNGC | 6 cut(s) | 1083, 1837, 2736, 2853, 3001, 3019 |
| PleI | GAGTC | 5 cut(s) | 404, 1181, 1433, 1563, 2100 |
| PluTI | GGCGCC | 1 cut(s) | 116 |
| PpsI | GAGTC | 5 cut(s) | 404, 1181, 1433, 1563, 2100 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1670 |
| PshBI | ATTAAT | 2 cut(s) | 1206, 2637 |
| PsiI | TTATAA | 1 cut(s) | 1721 |
| Psp6I | CCWGG | 7 cut(s) | 935, 1498, 1642, 1748, 1916, 2044, 2472 |
| PspFI | CCCAGC | 2 cut(s) | 2912, 3013 |
| PspGI | CCWGG | 7 cut(s) | 935, 1498, 1642, 1748, 1916, 2044, 2472 |
| PspLI | CGTACG | 1 cut(s) | 2584 |
| PspN4I | GGNNCC | 4 cut(s) | 114, 555, 2302, 2870 |
| PspPI | GGNCC | 1 cut(s) | 554 |
| PstI | CTGCAG | 2 cut(s) | 761, 3022 |
| PsuI | RGATCY | 2 cut(s) | 1163, 2404 |
| PsyI | GACNNNGTC | 1 cut(s) | 1214 |
| PvuII | CAGCTG | 1 cut(s) | 3017 |
| RsaI | GTAC | 8 cut(s) | 271, 473, 688, 1347, 1480, 1735, 2183, 2586 |
| RsaNI | GTAC | 8 cut(s) | 270, 472, 687, 1346, 1479, 1734, 2182, 2585 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1467, 1473, 1530 |
| SalI | GTCGAC | 1 cut(s) | 2510 |
| SatI | GCNGC | 6 cut(s) | 1082, 1836, 2735, 2852, 3000, 3018 |
| Sau3AI | GATC | 8 cut(s) | 727, 991, 1163, 1332, 1376, 2214, 2404, 2764 |
| Sau96I | GGNCC | 1 cut(s) | 554 |
| SchI | GAGTC | 5 cut(s) | 404, 1181, 1433, 1564, 2101 |
| SduI | GDGCHC | 1 cut(s) | 935 |
| SfaNI | GCATC | 9 cut(s) | 519, 787, 896, 940, 1333, 1613, 1944, 2587, 2965 |
| SfcI | CTRYAG | 4 cut(s) | 21, 303, 757, 3018 |
| SfoI | GGCGCC | 1 cut(s) | 114 |
| SfuI | TTCGAA | 1 cut(s) | 542 |
| SinI | GGWCC | 1 cut(s) | 554 |
| SmaI | CCCGGG | 1 cut(s) | 2326 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1467, 1473, 1530 |
| SmlI | CTYRAG | 2 cut(s) | 1841, 3068 |
| SmoI | CTYRAG | 2 cut(s) | 1841, 3068 |
| SseBI | AGGCCT | 1 cut(s) | 2221 |
| SsiI | CCGC | 2 cut(s) | 587, 1082 |
| SspDI | GGCGCC | 1 cut(s) | 112 |
| SspI | AATATT | 1 cut(s) | 2029 |
| SspMI | CTAG | 7 cut(s) | 27, 954, 971, 1127, 1191, 2009, 2268 |
| StuI | AGGCCT | 1 cut(s) | 2221 |
| StyI | CCWWGG | 2 cut(s) | 1939, 2781 |
| TaaI | ACNGT | 7 cut(s) | 329, 419, 686, 699, 1216, 1483, 2939 |
| TaiI | ACGT | 2 cut(s) | 1663, 2137 |
| TaqI | TCGA | 9 cut(s) | 180, 437, 542, 980, 994, 1779, 2080, 2339, 2511 |
| TaqII | GACCGA | 1 cut(s) | 681 |
| TatI | WGTACW | 3 cut(s) | 269, 471, 2181 |
| TauI | GCSGC | 1 cut(s) | 1084 |
| TfiI | GAWTC | 5 cut(s) | 182, 299, 434, 977, 2549 |
| TscAI | CASTG | 4 cut(s) | 247, 334, 761, 2236 |
| TseFI | GTSAC | 3 cut(s) | 323, 693, 818 |
| TseI | GCWGC | 5 cut(s) | 1835, 2734, 2851, 2999, 3017 |
| Tsp45I | GTSAC | 3 cut(s) | 323, 693, 818 |
| TspGWI | ACGGA | 2 cut(s) | 1047, 2495 |
| TspMI | CCCGGG | 1 cut(s) | 2324 |
| TspRI | CASTG | 4 cut(s) | 247, 334, 761, 2236 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1214 |
| VneI | GTGCAC | 1 cut(s) | 931 |
| VpaK11BI | GGWCC | 1 cut(s) | 554 |
| VspI | ATTAAT | 2 cut(s) | 1206, 2637 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1647, 2653 |
| XceI | RCATGY | 4 cut(s) | 534, 1640, 2229, 2291 |
| XmaI | CCCGGG | 1 cut(s) | 2324 |
| XmiI | GTMKAC | 2 cut(s) | 701, 2511 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2613, 2700, 2756 |
| XspI | CTAG | 7 cut(s) | 27, 954, 971, 1127, 1191, 2009, 2268 |
| Zsp2I | ATGCAT | 3 cut(s) | 149, 532, 1628 |