Rmu_sc0030360.1_g000001

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030360.1
OG0001072
Physical Location & Seq
Reverse (-)
6702 .. 8719
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030360.1_g000001.1.cds

Sequence Viewer

Length: 1926 bp
atgattcaattcgatgtggtgctgagtacttggatgagcttacttgctccaaacccttatggacgatctggcaggagattttatgaagaagacaaccggtctattcctgttgagctacaatgtcatgactctgggtctggctttaattcccatgctcatgttgatggcacggtatgggacttaattcctggtgttaaaagtagtgtgtatcctcatcagcgtgcaggttttgaatttatttggagtcatatagccggtggaattcatcttgaaaagttgcagaagacaagtagtgctgatggtgggggtggatgcataatatcacatgcacctggaacagggaagacacgtctgaccattgtctttcttcaggcatacatgagatttaacccaaaatgcaggccacttataatcgctcctcgtaccatgcttctcacctgggaagaggagtttaaaaaatggggcttcaatgttccctttcacaatctcaacaatcagagtttatccgggaaggagaataaagcagctctcaagattttggtgcaagatggaggccagcgccatgtgaaaagtgtggatggtagtcgttggttgaagttatattcctggaaaaaggaaagaagcatccttggaattagttacagactttttgagaaactttctactgcacataattctggaggcaagaaagcttacctagctaagacaatgaggaatattctattagactttcctggtattgtagtctttgatgaagggcatacacctcgaaatgataagagtcatatgtggaaggcttcatcaaatatcaaaacacatagacgtattattctctcaggaactccttttcaaaacaattttgatgagctgtacaatacaatttgcttggcaaggccagactggatcaggcctacatgcagtggacgaagcctaaaaagaaatgtagtgaaagcgcaacagacgtctccggccaaatacattaccaaaggtgccggtgataaagcaaaacaagctgaggaaataggagctagaattgccccaattgtgcatgtttacagaggttccatattacgagatacacttcccgggttgaggaactcgattgttgttttacagccaagcaagttacagaaagaaatttctacaagaattcaagagaggaaggatcttccattctttaaagatgaacattacgagactttaatatctgttcatccttcggctttgctgaacctggagaaggaaaagagggtatccttgcttaatcaggtcgacttggagaggttaaaggaaaaaagattaaatcctgaatctgggatgaaggcaaagtttgtgattgaacttgtacggcttagtgatgctatgaatgaaagagttctggtgttcagtcagtatattaatgccttgacctttttaagggagcttttgaaatctcagtttcaatggactgaaggggaagatattctttatatgtatggagcagatgatgaaaagcagcgccaaacatcaatgaaggctttcaatgatccatcaagcagagccaaggtattattagcctcaacgaaaggttgtaacgaaggaataaatttagttggagcttcaagggttgtgctgcttgatgttacatggaacccatctgttgagaggcaagctatatcccgagcataccgattgggacagaagaaaattgtgttcatctaccatcttctcattgctggggcaagagaagaggacaaacacagtaggcaagttgagaagcatcatctgtctgaattggtattttcttgttcagatatggaagctgccaagaaaatcccagctgcagttgcagaggacaagattttggaagagatggttcagcatgagaaactcaagcatatatttgaaaagataacattactggatgaagcctcatgttttgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

641

Amino Acids

72.82

Weight (kDa)

9.42

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AatII GACGTC 1 cut(s) 965
Acc36I ACCTGC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 989
AccI GTMKAC 1 cut(s) 1272
AclWI GGATC 3 cut(s) 911, 1173, 1520
AcoI YGGCCR 1 cut(s) 969
AcsI RAATTY 5 cut(s) 233, 261, 1137, 1149, 1585
AcuI CTGAAG 2 cut(s) 353, 1470
AcyI GRCGYC 1 cut(s) 962
AfaI GTAC 4 cut(s) 28, 424, 872, 1347
AfiI CCNNNNNNNGG 5 cut(s) 338, 1092, 1240, 1313, 1416
AflIII ACRYGT 1 cut(s) 347
AgeI ACCGGT 1 cut(s) 96
AhdI GACNNNNNGTC 2 cut(s) 97, 133
AjiI CACGTC 1 cut(s) 350
AjnI CCWGG 6 cut(s) 187, 331, 437, 605, 733, 1233
Alw26I GTCTC 2 cut(s) 969, 1190
AlwI GGATC 3 cut(s) 911, 1173, 1520
Ama87I CYCGRG 2 cut(s) 1085, 1659
AoxI GGCC 5 cut(s) 401, 553, 893, 908, 969
ApeKI GCWGC 5 cut(s) 524, 1495, 1612, 1802, 1820
ApoI RAATTY 5 cut(s) 233, 261, 1137, 1149, 1585
AseI ATTAAT 1 cut(s) 1398
AsiGI ACCGGT 1 cut(s) 96
Asp700I GAANNNNTTC 3 cut(s) 1374, 1461, 1517
AspLEI GCGC 3 cut(s) 561, 955, 1500
AsuC2I CCSGG 3 cut(s) 508, 1086, 1087
AsuHPI GGTGA 2 cut(s) 427, 1007
AvaI CYCGRG 2 cut(s) 1085, 1659
BanI GGYRCC 1 cut(s) 989
BbsI GAAGAC 3 cut(s) 96, 290, 350
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 5 cut(s) 536, 1507, 1599, 1789, 1807
BccI CCATC 8 cut(s) 158, 293, 542, 572, 1537, 1642, 1710, 1846
BceAI ACGGC 1 cut(s) 1364
BcgI CGANNNNNNTGC 2 cut(s) 749, 783
BciT130I CCWGG 6 cut(s) 189, 333, 439, 607, 735, 1235
BciVI GTATCC 2 cut(s) 219, 1264
BcnI CCSGG 3 cut(s) 508, 1086, 1087
BcoDI GTCTC 2 cut(s) 969, 1190
BfaI CTAG 2 cut(s) 698, 1029
BfmI CTRYAG 1 cut(s) 1821
BfoI RGCGCY 2 cut(s) 562, 1501
BfuAI ACCTGC 1 cut(s) 215
BfuI GTATCC 2 cut(s) 219, 1264
BisI GCNGC 5 cut(s) 525, 1496, 1613, 1803, 1821
BlsI GCNGC 5 cut(s) 526, 1497, 1614, 1804, 1822
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 9 cut(s) 189, 333, 439, 508, 607, 735, 1086, 1087, 1235
BmeRI GACNNNNNGTC 2 cut(s) 97, 133
BmeT110I CYCGRG 2 cut(s) 1085, 1659
BmgBI CACGTC 1 cut(s) 350
BmiI GGNNCC 3 cut(s) 991, 1063, 1631
BmrFI CCNGG 9 cut(s) 189, 333, 439, 508, 607, 735, 1086, 1087, 1235
BmsI GCATC 4 cut(s) 302, 633, 1348, 1768
BoxI GACNNNNGTC 1 cut(s) 359
BpiI GAAGAC 3 cut(s) 96, 290, 350
BpmI CTGGAG 2 cut(s) 699, 1256
Bpu10I CCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 2 cut(s) 515, 1856
BpuMI CCSGG 3 cut(s) 508, 1086, 1087
BsaHI GRCGYC 1 cut(s) 962
BsaJI CCNNGG 4 cut(s) 438, 628, 1085, 1542
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 5 cut(s) 338, 1092, 1240, 1313, 1416
Bse118I RCCGGY 3 cut(s) 96, 254, 992
Bse1I ACTGG 2 cut(s) 905, 1905
Bse3DI GCAATG 1 cut(s) 1710
BseBI CCWGG 6 cut(s) 189, 333, 439, 607, 735, 1235
BseDI CCNNGG 4 cut(s) 438, 628, 1085, 1542
BseGI GGATG 7 cut(s) 39, 317, 583, 624, 1213, 1323, 1909
BseLI CCNNNNNNNGG 5 cut(s) 338, 1092, 1240, 1313, 1416
BseMI GCAATG 1 cut(s) 1710
BseMII CTCAG 4 cut(s) 14, 849, 1005, 1448
BseNI ACTGG 2 cut(s) 905, 1905
BseRI GAGGAG 2 cut(s) 408, 461
BseXI GCAGC 5 cut(s) 536, 1507, 1599, 1789, 1807
BseYI CCCAGC 2 cut(s) 1715, 1816
BsgI GTGCAG 2 cut(s) 243, 651
BshFI GGCC 5 cut(s) 403, 555, 895, 910, 971
BshNI GGYRCC 1 cut(s) 989
BshTI ACCGGT 1 cut(s) 96
BsiHKCI CYCGRG 2 cut(s) 1085, 1659
BsiSI CCGG 6 cut(s) 97, 255, 507, 968, 993, 1086
BslFI GGGAC 2 cut(s) 191, 1689
BslI CCNNNNNNNGG 5 cut(s) 338, 1092, 1240, 1313, 1416
BsmAI GTCTC 2 cut(s) 969, 1190
BsmBI CGTCTC 1 cut(s) 969
BsmFI GGGAC 2 cut(s) 191, 1689
BsnI GGCC 5 cut(s) 403, 555, 895, 910, 971
BsoBI CYCGRG 2 cut(s) 1085, 1659
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 4 cut(s) 65, 903, 1165, 1525
BspANI GGCC 5 cut(s) 403, 555, 895, 910, 971
BspCNI CTCAG 4 cut(s) 15, 848, 1006, 1447
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 3 cut(s) 991, 1063, 1631
BspMAI CTGCAG 1 cut(s) 1825
BspMI ACCTGC 1 cut(s) 215
BspPI GGATC 3 cut(s) 911, 1173, 1520
BspT107I GGYRCC 1 cut(s) 989
BsrDI GCAATG 1 cut(s) 1710
BsrFI RCCGGY 3 cut(s) 96, 254, 992
BsrGI TGTACA 1 cut(s) 870
BsrI ACTGG 2 cut(s) 905, 1905
BssAI RCCGGY 3 cut(s) 96, 254, 992
BssECI CCNNGG 4 cut(s) 438, 628, 1085, 1542
BssMI GATC 4 cut(s) 65, 903, 1165, 1525
BssNI GRCGYC 1 cut(s) 962
BssT1I CCWWGG 2 cut(s) 628, 1542
Bst2UI CCWGG 6 cut(s) 189, 333, 439, 607, 735, 1235
Bst4CI ACNGT 2 cut(s) 172, 1742
Bst6I CTCTTC 3 cut(s) 438, 1722, 1842
BstACI GRCGYC 1 cut(s) 962
BstAUI TGTACA 1 cut(s) 870
BstC8I GCNNGC 4 cut(s) 222, 401, 557, 1650
BstDEI CTNAG 6 cut(s) 23, 702, 835, 1014, 1352, 1434
BstENI CCTNNNNNAGG 3 cut(s) 336, 1238, 1414
BstF5I GGATG 7 cut(s) 39, 317, 583, 624, 1213, 1323, 1909
BstH2I RGCGCY 2 cut(s) 562, 1501
BstHHI GCGC 3 cut(s) 561, 955, 1500
BstKTI GATC 4 cut(s) 68, 906, 1168, 1528
BstMAI GTCTC 2 cut(s) 969, 1190
BstMBI GATC 4 cut(s) 65, 903, 1165, 1525
BstMWI GCNNNNNNNGC 4 cut(s) 698, 1010, 1034, 1826
BstNI CCWGG 6 cut(s) 189, 333, 439, 607, 735, 1235
BstNSI RCATGY 3 cut(s) 329, 918, 1052
BstPAI GACNNNNGTC 1 cut(s) 359
BstSCI CCNGG 9 cut(s) 187, 331, 437, 506, 605, 733, 1084, 1085, 1233
BstSFI CTRYAG 1 cut(s) 1821
BstV1I GCAGC 5 cut(s) 536, 1507, 1599, 1789, 1807
BstV2I GAAGAC 3 cut(s) 96, 290, 350
BstX2I RGATCY 1 cut(s) 1165
BstYI RGATCY 1 cut(s) 1165
BsuI GTATCC 2 cut(s) 219, 1264
BsuRI GGCC 5 cut(s) 403, 555, 895, 910, 971
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 7 cut(s) 39, 317, 583, 624, 1213, 1323, 1909
BtsI GCAGTG 1 cut(s) 925
BtsIMutI CAGTG 1 cut(s) 925
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 4 cut(s) 222, 401, 557, 1650
CciI TCATGA 1 cut(s) 124
CfoI GCGC 3 cut(s) 561, 955, 1500
Cfr10I RCCGGY 3 cut(s) 96, 254, 992
Cfr9I CCCGGG 1 cut(s) 1085
Csp6I GTAC 4 cut(s) 27, 423, 871, 1346
CspAI ACCGGT 1 cut(s) 96
CviQI GTAC 4 cut(s) 27, 423, 871, 1346
DdeI CTNAG 6 cut(s) 23, 702, 835, 1014, 1352, 1434
DpnI GATC 4 cut(s) 67, 905, 1167, 1527
DpnII GATC 4 cut(s) 65, 903, 1165, 1525
DraI TTTAAA 2 cut(s) 454, 1180
DriI GACNNNNNGTC 2 cut(s) 97, 133
EaeI YGGCCR 1 cut(s) 969
Eam1104I CTCTTC 3 cut(s) 438, 1722, 1842
Eam1105I GACNNNNNGTC 2 cut(s) 97, 133
EarI CTCTTC 3 cut(s) 438, 1722, 1842
Eco130I CCWWGG 2 cut(s) 628, 1542
Eco147I AGGCCT 1 cut(s) 910
Eco57I CTGAAG 2 cut(s) 353, 1470
Eco88I CYCGRG 2 cut(s) 1085, 1659
EcoNI CCTNNNNNAGG 3 cut(s) 336, 1238, 1414
EcoRI GAATTC 2 cut(s) 261, 1149
EcoRII CCWGG 6 cut(s) 187, 331, 437, 605, 733, 1233
EcoT14I CCWWGG 2 cut(s) 628, 1542
EcoT22I ATGCAT 1 cut(s) 317
ErhI CCWWGG 2 cut(s) 628, 1542
Esp3I CGTCTC 1 cut(s) 969
FalI AAGNNNNNCTT 2 cut(s) 1449, 1481
FaqI GGGAC 2 cut(s) 191, 1689
FauNDI CATATG 1 cut(s) 786
FblI GTMKAC 1 cut(s) 1272
Fnu4HI GCNGC 5 cut(s) 525, 1496, 1613, 1803, 1821
FokI GGATG 7 cut(s) 46, 324, 590, 611, 1200, 1330, 1916
Fsp4HI GCNGC 5 cut(s) 525, 1496, 1613, 1803, 1821
FspBI CTAG 2 cut(s) 698, 1029
GlaI GCGC 3 cut(s) 560, 954, 1499
GluI GCNGC 5 cut(s) 525, 1496, 1613, 1803, 1821
GsaI CCCAGC 2 cut(s) 1719, 1820
GsuI CTGGAG 2 cut(s) 699, 1256
HaeII RGCGCY 2 cut(s) 562, 1501
HaeIII GGCC 5 cut(s) 403, 555, 895, 910, 971
HapII CCGG 6 cut(s) 97, 255, 507, 968, 993, 1086
HhaI GCGC 3 cut(s) 561, 955, 1500
Hin1I GRCGYC 1 cut(s) 962
Hin6I GCGC 3 cut(s) 559, 953, 1498
HinP1I GCGC 3 cut(s) 559, 953, 1498
HincII GTYRAC 1 cut(s) 1273
HindII GTYRAC 1 cut(s) 1273
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 5 cut(s) 4, 128, 244, 781, 1310
HpaII CCGG 6 cut(s) 97, 255, 507, 968, 993, 1086
HphI GGTGA 2 cut(s) 427, 1007
Hpy166II GTNNAC 3 cut(s) 923, 1054, 1273
Hpy188I TCNGA 4 cut(s) 354, 498, 1771, 1792
Hpy188III TCNNGA 8 cut(s) 125, 269, 532, 678, 837, 1154, 1307, 1659
Hpy8I GTNNAC 3 cut(s) 923, 1054, 1273
HpyCH4III ACNGT 2 cut(s) 172, 1742
HpyCH4IV ACGT 3 cut(s) 349, 823, 962
HpyF10VI GCNNNNNNNGC 4 cut(s) 698, 1010, 1034, 1826
HpyF3I CTNAG 6 cut(s) 23, 702, 835, 1014, 1352, 1434
HpySE526I ACGT 3 cut(s) 349, 823, 962
Hsp92I GRCGYC 1 cut(s) 962
HspAI GCGC 3 cut(s) 559, 953, 1498
Kzo9I GATC 4 cut(s) 65, 903, 1165, 1525
LmnI GCTCC 6 cut(s) 52, 421, 1025, 1420, 1478, 1595
Lsp1109I GCAGC 5 cut(s) 536, 1507, 1599, 1789, 1807
LweI GCATC 4 cut(s) 302, 633, 1348, 1768
MaeI CTAG 2 cut(s) 698, 1029
MaeII ACGT 3 cut(s) 349, 823, 962
MaeIII GTNAC 4 cut(s) 638, 1125, 1571, 1621
MalI GATC 4 cut(s) 67, 905, 1167, 1527
MboI GATC 4 cut(s) 65, 903, 1165, 1525
MfeI CAATTG 1 cut(s) 1041
MflI RGATCY 1 cut(s) 1165
MlyI GAGTC 3 cut(s) 122, 253, 790
MmeI TCCRAC 1 cut(s) 1573
Mph1103I ATGCAT 1 cut(s) 317
MroXI GAANNNNTTC 3 cut(s) 1374, 1461, 1517
MslI CAYNNNNRTG 3 cut(s) 156, 162, 219
MspA1I CMGCKG 1 cut(s) 1820
MspI CCGG 6 cut(s) 97, 255, 507, 968, 993, 1086
MspR9I CCNGG 9 cut(s) 189, 333, 439, 508, 607, 735, 1086, 1087, 1235
MunI CAATTG 1 cut(s) 1041
MvaI CCWGG 6 cut(s) 189, 333, 439, 607, 735, 1235
MwoI GCNNNNNNNGC 4 cut(s) 698, 1010, 1034, 1826
NciI CCSGG 3 cut(s) 508, 1086, 1087
NdeI CATATG 1 cut(s) 786
NdeII GATC 4 cut(s) 65, 903, 1165, 1525
NlaIV GGNNCC 3 cut(s) 991, 1063, 1631
NsiI ATGCAT 1 cut(s) 317
NspI RCATGY 3 cut(s) 329, 918, 1052
PagI TCATGA 1 cut(s) 124
PceI AGGCCT 1 cut(s) 910
PdmI GAANNNNTTC 3 cut(s) 1374, 1461, 1517
PfeI GAWTC 2 cut(s) 4, 1310
PfoI TCCNGGA 2 cut(s) 506, 605
PinAI ACCGGT 1 cut(s) 96
PkrI GCNGC 5 cut(s) 526, 1497, 1614, 1804, 1822
PleI GAGTC 3 cut(s) 122, 252, 789
PpsI GAGTC 3 cut(s) 122, 252, 789
PshAI GACNNNNGTC 1 cut(s) 359
PshBI ATTAAT 1 cut(s) 1398
PsiI TTATAA 1 cut(s) 410
Psp6I CCWGG 6 cut(s) 187, 331, 437, 605, 733, 1233
PspFI CCCAGC 2 cut(s) 1715, 1816
PspGI CCWGG 6 cut(s) 187, 331, 437, 605, 733, 1233
PspN4I GGNNCC 3 cut(s) 991, 1063, 1631
PstI CTGCAG 1 cut(s) 1825
PsuI RGATCY 1 cut(s) 1165
PvuII CAGCTG 1 cut(s) 1820
RsaI GTAC 4 cut(s) 28, 424, 872, 1347
RsaNI GTAC 4 cut(s) 27, 423, 871, 1346
RseI CAYNNNNRTG 3 cut(s) 156, 162, 219
SalI GTCGAC 1 cut(s) 1271
SatI GCNGC 5 cut(s) 525, 1496, 1613, 1803, 1821
Sau3AI GATC 4 cut(s) 65, 903, 1165, 1525
ScaI AGTACT 1 cut(s) 28
SchI GAGTC 3 cut(s) 122, 253, 790
ScrFI CCNGG 9 cut(s) 189, 333, 439, 508, 607, 735, 1086, 1087, 1235
SfaNI GCATC 4 cut(s) 302, 633, 1348, 1768
SfcI CTRYAG 1 cut(s) 1821
SmaI CCCGGG 1 cut(s) 1087
SmiMI CAYNNNNRTG 3 cut(s) 156, 162, 219
SmlI CTYRAG 2 cut(s) 530, 1871
SmoI CTYRAG 2 cut(s) 530, 1871
SseBI AGGCCT 1 cut(s) 910
SspI AATATT 1 cut(s) 718
SspMI CTAG 2 cut(s) 698, 1029
StuI AGGCCT 1 cut(s) 910
StyD4I CCNGG 9 cut(s) 187, 331, 437, 506, 605, 733, 1084, 1085, 1233
StyI CCWWGG 2 cut(s) 628, 1542
TaaI ACNGT 2 cut(s) 172, 1742
TaiI ACGT 3 cut(s) 352, 826, 965
TaqI TCGA 4 cut(s) 12, 769, 1100, 1272
TatI WGTACW 2 cut(s) 26, 870
TfiI GAWTC 2 cut(s) 4, 1310
TscAI CASTG 1 cut(s) 925
TseI GCWGC 5 cut(s) 524, 1495, 1612, 1802, 1820
TspMI CCCGGG 1 cut(s) 1085
TspRI CASTG 1 cut(s) 925
VspI ATTAAT 1 cut(s) 1398
XagI CCTNNNNNAGG 3 cut(s) 336, 1238, 1414
XapI RAATTY 5 cut(s) 233, 261, 1137, 1149, 1585
XceI RCATGY 3 cut(s) 329, 918, 1052
XmaI CCCGGG 1 cut(s) 1085
XmiI GTMKAC 1 cut(s) 1272
XmnI GAANNNNTTC 3 cut(s) 1374, 1461, 1517
XspI CTAG 2 cut(s) 698, 1029
ZraI GACGTC 1 cut(s) 963
ZrmI AGTACT 1 cut(s) 28
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.