RchiOBHm_Chr7g0206521

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001072
Physical Location & Seq
Reverse (-)
24172144 .. 24176998
4855 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18482

Sequence Viewer

Length: 3243 bp
ATGTTTGACTTTAGCTTGCCTATAGCTAGTAGAACAAGGAAGGGGCAGGAGAGAGTTTACAAGGAGTTCAATGAAAAAAAGAAGCAGAAGAAGAAGAATGAGGGTGGCTCGGCGCCCAATGATTTTGAGAAATTGGGGTCTGAATGCATAGTTCTTTCGGATGATAGCATGGAGGATGTCGATTCAGAGGGTTCTGATTTAGAAAAGAGTGAGGGAAGTGAGAAGGTGGGGAAAGGGGGGAGTGTGGAGGTTGGGGGTGTTGAGACAAGTACAAGGTTAGGAGTGGATTTGTCAGCCGATTCTGTAGCTGATTTGGATGATGGTGACAGTGAAGGTGTGAAAGTCATTAGTTTGGTTAGTGATAGTGATGATGAGGAGGTGTCAATAAATGAAGAGGCAGGTGGAGGAGACTCTGACGGCGATAAGGATAGTGATTCGAGGAGTGTAGGTTCGGACGATGAACACAATGTGTACTTGGCTGATGATGATGATGATGATGAAGATGATATTGAAAGCATCTCTTCAGATGATGATGCAAGTAAGTATTTGAATAATGAGCGACCGGTTAATTTAGATTGTGAAACTGAGGATGCGGAGAGAAGTGGAGGAGAGGGAGAAAAGGTTGGTATTTGTCAAAAGAGAAAGAGAAACATTGGAGAGGATGGTCAAAAGTTCAATTGTGTAGCACACCGTACTCGGTCACGGTCTACAAGTCATTCTTCTGGCCATGATGATCAGAGGGATGATGTTGATAACAATCACTGCAGTAGTCAGACAAATAGGCATCCTAAAATGAATTCAAAGTGCAACAATAGAAGAAGTTGTGACAATGATGAGACCTATGCTTGCAGTCTGAACAATGGGCGTGATAAATGGAATTATGTGCAGAAAGCATCTCAAAAGAATGAAGGGCTGAGGAAGCTTACTAAGAAAAAGTGCACCAGGGTAAAAAAAGATGCTAGTGCTTACAAAATTCTAGCAGATTCGATTTATGAGGATGGAGAATTGCTCCCAGAAGGGTCAGCTTCCTTCGGGGATAAAGCCGTTAAAAATGGAACTCTTCCGTTGAAGTTCTCATTTGGTGAGCCGCCAAGTATTGTTCCAGTAGAGAAGTCAGATTGTGAGAAAGAACTAGAGAACCTTTTTAAAGAAATGGAATTTGCTATTAGATCTGCTCAGATTGGTTCTACTGACTCTAGTGAGGTTGAAATTAATGACACAGTCCCTCCAGTTAAGGAAGTTACTCAGCATATGCTTTGTAGTCAAGGGAAACATCATCTTATACTTGATGAAGAAATTGGACTGATTTGCAAATTTTGCCCTCATGTGCATCAGGAGATCAAGTATATTGTACCAGAATTTGCTCCAAACCCTTATGGACGATCTGGCAGGAGATTTTATGAAGAAGACAACCGGTCTATTCCTGTTGAGCTACAATGTCATGACTCTGGGTCTGGCTTTAATTCCCATGCTCATGTTGATGGCACGGTATGGGACTTAATTCCTGGTGTTAAAAGTAGTGTGTATCCTCATCAGCGTGCAGGTTTTGAATTTATTTGGAGTCATATAGCCGGTGGAATTCATCTTGAAAAGTTGCAGAAGACAAGTAGTGCTGATGGTGGGGGTGGATGCATAATATCACATGCACCTGGAACAGGGAAGACACGTCTGACCATTGTCTTTCTTCAGGCATACATGAGATTTAACCCAAAATGCAGGCCACTTATAATCGCTCCTCGTACCATGCTTCTCACCTGGGAAGAGGAGTTTAAAAAATGGGGCTTCGATGTTCCCTTTCACAATCTCAACAATCAGAATTTATCCGGGAAGGAGAATAAAGCAGCTCTCAAGATTTTGGTGCAAGATGGAGGCCAGCGCCATGTGAAAAGTGTGGATGGTAGTCGTTGGTTGAAGTTATATTCCTGGAAAAAGGAAAGAAGCATCCTTGGAATTAGTTACAGACTTTTTGAGAAACTTTCTACTGCGCATAATTCTGGAGGCAAGAAAGCTTACCTAGCTAAGACAATGAGGAATATTCTATTAGACTTTCCTGGTATTGTAGTCTTTGATGAAGGGCATACACCTCGAAATGATAAGAGTCATATGTGGAAGGCTTCATCAAATATCAAAACACATAGACGTATTATTCTCTCAGGAACTCCTTTTCAAAACAATTTTGATGAGCTGTACAATACAATTTGCTTGGCAAGGCCAGACTGGATCAGGCCTACATGCAGTGGACGAAGCCTAAAAAGAAATGTAGTGAAAGCGCAACAGACGTCTCCGGCCAAATACATTACCAAAGGTGCCGGTGATAAAGCAAAACAAGCTGAGGAAATAGGAGCTAGAATTGCCCCAGTTGTGCATGTTTACAGAGGTTCCATATTACGAGATACACTTCCCGGGTTGAGGAACTCGATTGTTGTTTTACAGCCAAGCAAGTTACAGAAAGAAATTTCTACAAGAATTCAAGAGAGGAAGGATCTTCCATTCTTTAAAGATGAACATTACGAGACTTTAATATCTGTTCATCCTTCGGCTTTGCTGAACCTGGAGAAGGAAAAGAGGGTATCCTTGCTTAATCAGGTCGACTTGGAGAGGTTAAAGGAAAAAAGATTAAATCCTGAATCTGGGATGAAGGCAAAGTTTGTGATTGAACTCGTACGGCTTAGTGATGCTATGAATGAAAGAGTTCTGGTGTTCAGTCAGTATATTAATGCCTTGACCTTTTTAAGGGAGCTTTTGAAATCTCAGTTTCAATGGACTGAAGGGGAAGAGATTCTTTATATGTATGGAGCAGATGATGAAAAGCAGCGCCAAACATCAATGAAGGCTTTCAATGATCCATCAAGCAGAGCCAAGGTATTATTAGCCTCAACGAAAGGTTGTAACGAAGGAATAAATTTAGTTGGAGCTTCAAGGGTTGTGCTGCTTGATGTTACATGGAACCCATCTGTTGAGAGGCAAGCTATATCCCGAGCATACCGATTGGGACAGAAGAAAATAGTGTTCATCTACCATCTTCTCATTGCTGGGGCAAGAGAAGAGGATAAACACAGTAGGCAAGTTGAGAAGCATCATCTGTCTGAATTGGTATTTTCTTGTTCAGATATGGAAGCTGCCAAGAAAATCCCAGCTGCAGTTGCAGAGGACAAGATTTTGGAAGAGATGGTTCAGCATGAGAAACTCAAGCATATATTTGAAAAGATAACATTACTGGATGAAGCCTCATGTTATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

1080

Amino Acids

121.17

Weight (kDa)

6.05

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 529 - 722 2.6e-08 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 540 - 850 1.7e-21 SNF2-related domain
Helicase_C PF00271 880 - 998 8.6e-18 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1727
AarI CACCTGC 1 cut(s) 389
AatII GACGTC 1 cut(s) 2282
Acc16I TGCGCA 1 cut(s) 1986
Acc36I ACCTGC 2 cut(s) 389, 1532
AccB1I GGYRCC 2 cut(s) 112, 2306
AccI GTMKAC 2 cut(s) 707, 2589
AciI CCGC 2 cut(s) 593, 1088
AclWI GGATC 3 cut(s) 2228, 2490, 2837
AcoI YGGCCR 2 cut(s) 724, 2286
AcuI CTGAAG 3 cut(s) 507, 1670, 2787
AcyI GRCGYC 2 cut(s) 113, 2279
AdeI CACNNNGTG 1 cut(s) 469
AfaI GTAC 7 cut(s) 271, 473, 694, 1353, 1741, 2189, 2664
AfiI CCNNNNNNNGG 5 cut(s) 1655, 2409, 2557, 2630, 2733
AflIII ACRYGT 1 cut(s) 1664
AgeI ACCGGT 2 cut(s) 562, 1413
AhdI GACNNNNNGTC 2 cut(s) 1414, 1450
AjiI CACGTC 1 cut(s) 1667
AjnI CCWGG 7 cut(s) 941, 1504, 1648, 1754, 1922, 2050, 2550
AloI GAACNNNNNNTCC 2 cut(s) 433, 465
Alw21I GWGCWC 1 cut(s) 941
Alw26I GTCTC 5 cut(s) 257, 402, 830, 2286, 2507
Alw44I GTGCAC 1 cut(s) 937
AlwI GGATC 3 cut(s) 2228, 2490, 2837
Ama87I CYCGRG 2 cut(s) 2402, 2976
AoxI GGCC 6 cut(s) 724, 1718, 1870, 2210, 2225, 2286
ApaLI GTGCAC 1 cut(s) 937
ApeKI GCWGC 5 cut(s) 1841, 2812, 2929, 3119, 3137
AseI ATTAAT 2 cut(s) 1212, 2715
AsiGI ACCGGT 2 cut(s) 562, 1413
Asp700I GAANNNNTTC 3 cut(s) 2691, 2778, 2834
AspLEI GCGC 5 cut(s) 115, 1878, 1987, 2272, 2817
AsuC2I CCSGG 3 cut(s) 1825, 2403, 2404
AsuHPI GGTGA 4 cut(s) 335, 1094, 1744, 2324
AvaI CYCGRG 2 cut(s) 2402, 2976
BaeGI GKGCMC 1 cut(s) 941
BalI TGGCCA 1 cut(s) 726
BanI GGYRCC 2 cut(s) 112, 2306
BbsI GAAGAC 3 cut(s) 1413, 1607, 1667
Bbv12I GWGCWC 1 cut(s) 941
BbvCI CCTCAGC 2 cut(s) 914, 2331
BbvI GCAGC 5 cut(s) 1853, 2824, 2916, 3106, 3124
BceAI ACGGC 3 cut(s) 433, 1028, 2681
BcgI CGANNNNNNTGC 2 cut(s) 2066, 2100
BciT130I CCWGG 7 cut(s) 943, 1506, 1650, 1756, 1924, 2052, 2552
BciVI GTATCC 2 cut(s) 1536, 2581
BclI TGATCA 1 cut(s) 733
BcnI CCSGG 3 cut(s) 1825, 2403, 2404
BcoDI GTCTC 5 cut(s) 257, 402, 830, 2286, 2507
BfaI CTAG 7 cut(s) 27, 960, 977, 1133, 1197, 2015, 2346
BfmI CTRYAG 4 cut(s) 21, 303, 763, 3138
BfoI RGCGCY 3 cut(s) 116, 1879, 2818
BfuAI ACCTGC 2 cut(s) 389, 1532
BfuI GTATCC 2 cut(s) 1536, 2581
BglII AGATCT 1 cut(s) 1169
BisI GCNGC 6 cut(s) 1088, 1842, 2813, 2930, 3120, 3138
BlsI GCNGC 6 cut(s) 1089, 1843, 2814, 2931, 3121, 3139
BmeRI GACNNNNNGTC 2 cut(s) 1414, 1450
BmeT110I CYCGRG 2 cut(s) 2402, 2976
BmgBI CACGTC 1 cut(s) 1667
BmiI GGNNCC 4 cut(s) 114, 2308, 2380, 2948
BmrI ACTGGG 1 cut(s) 2351
BmuI ACTGGG 1 cut(s) 2351
BoxI GACNNNNGTC 1 cut(s) 1676
BpiI GAAGAC 3 cut(s) 1413, 1607, 1667
BplI GAGNNNNNCTC 4 cut(s) 92, 124, 993, 1025
BpmI CTGGAG 3 cut(s) 1212, 2016, 2573
Bpu10I CCTNAGC 2 cut(s) 914, 2331
BpuEI CTTGAG 2 cut(s) 1832, 3173
BpuMI CCSGG 3 cut(s) 1825, 2403, 2404
BsaBI GATNNNNATC 1 cut(s) 756
BsaHI GRCGYC 2 cut(s) 113, 2279
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 5 cut(s) 942, 1755, 1945, 2402, 2859
BsaWI WCCGGW 2 cut(s) 562, 1413
BsaXI ACNNNNNCTCC 8 cut(s) 433, 463, 606, 636, 1210, 1240, 1328, 1358
Bsc4I CCNNNNNNNGG 5 cut(s) 1655, 2409, 2557, 2630, 2733
Bse118I RCCGGY 4 cut(s) 562, 1413, 1571, 2309
Bse1I ACTGG 5 cut(s) 1103, 1229, 2222, 2357, 3222
Bse3DI GCAATG 1 cut(s) 3027
Bse8I GATNNNNATC 1 cut(s) 756
BseBI CCWGG 7 cut(s) 943, 1506, 1650, 1756, 1924, 2052, 2552
BseDI CCNNGG 5 cut(s) 942, 1755, 1945, 2402, 2859
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 5 cut(s) 1655, 2409, 2557, 2630, 2733
BseMI GCAATG 1 cut(s) 3027
BseMII CTCAG 7 cut(s) 576, 905, 1190, 1259, 2166, 2322, 2765
BseNI ACTGG 5 cut(s) 1103, 1229, 2222, 2357, 3222
BseRI GAGGAG 6 cut(s) 389, 420, 454, 621, 1725, 1778
BseSI GKGCMC 1 cut(s) 941
BseXI GCAGC 5 cut(s) 1853, 2824, 2916, 3106, 3124
BseYI CCCAGC 2 cut(s) 3032, 3133
BsgI GTGCAG 2 cut(s) 905, 1560
Bsh1285I CGRYCG 1 cut(s) 563
BshFI GGCC 6 cut(s) 726, 1720, 1872, 2212, 2227, 2288
BshNI GGYRCC 2 cut(s) 112, 2306
BshTI ACCGGT 2 cut(s) 562, 1413
BsiEI CGRYCG 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 941
BsiHKCI CYCGRG 2 cut(s) 2402, 2976
BsiSI CCGG 7 cut(s) 563, 1414, 1572, 1824, 2285, 2310, 2403
BsiWI CGTACG 1 cut(s) 2662
BslFI GGGAC 3 cut(s) 1208, 1508, 3006
BslI CCNNNNNNNGG 5 cut(s) 1655, 2409, 2557, 2630, 2733
BsmAI GTCTC 5 cut(s) 257, 402, 830, 2286, 2507
BsmBI CGTCTC 1 cut(s) 2286
BsmFI GGGAC 3 cut(s) 1208, 1508, 3006
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 6 cut(s) 726, 1720, 1872, 2212, 2227, 2288
Bso31I GGTCTC 1 cut(s) 830
BsoBI CYCGRG 2 cut(s) 2402, 2976
Bsp1286I GDGCHC 1 cut(s) 941
Bsp1407I TGTACA 1 cut(s) 2187
Bsp143I GATC 7 cut(s) 733, 1169, 1338, 1382, 2220, 2482, 2842
BspACI CCGC 2 cut(s) 593, 1088
BspANI GGCC 6 cut(s) 726, 1720, 1872, 2212, 2227, 2288
BspCNI CTCAG 7 cut(s) 577, 906, 1189, 1258, 2165, 2323, 2764
BspHI TCATGA 1 cut(s) 1441
BspLI GGNNCC 4 cut(s) 114, 2308, 2380, 2948
BspMAI CTGCAG 2 cut(s) 767, 3142
BspMI ACCTGC 2 cut(s) 389, 1532
BspPI GGATC 3 cut(s) 2228, 2490, 2837
BspT107I GGYRCC 2 cut(s) 112, 2306
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 3027
BsrFI RCCGGY 4 cut(s) 562, 1413, 1571, 2309
BsrGI TGTACA 1 cut(s) 2187
BsrI ACTGG 5 cut(s) 1103, 1229, 2222, 2357, 3222
BssAI RCCGGY 4 cut(s) 562, 1413, 1571, 2309
BssECI CCNNGG 5 cut(s) 942, 1755, 1945, 2402, 2859
BssMI GATC 7 cut(s) 733, 1169, 1338, 1382, 2220, 2482, 2842
BssNI GRCGYC 2 cut(s) 113, 2279
BssT1I CCWWGG 2 cut(s) 1945, 2859
Bst2UI CCWGG 7 cut(s) 943, 1506, 1650, 1756, 1924, 2052, 2552
Bst4CI ACNGT 6 cut(s) 329, 692, 705, 1222, 1489, 3059
Bst6I CTCTTC 7 cut(s) 387, 526, 1065, 1755, 2769, 3039, 3159
BstACI GRCGYC 2 cut(s) 113, 2279
BstAPI GCANNNNNTGC 1 cut(s) 1317
BstAUI TGTACA 1 cut(s) 2187
BstC8I GCNNGC 6 cut(s) 17, 847, 1539, 1718, 1874, 2967
BstENI CCTNNNNNAGG 3 cut(s) 1653, 2555, 2731
BstH2I RGCGCY 3 cut(s) 116, 1879, 2818
BstHHI GCGC 5 cut(s) 115, 1878, 1987, 2272, 2817
BstKTI GATC 7 cut(s) 736, 1172, 1341, 1385, 2223, 2485, 2845
BstMAI GTCTC 5 cut(s) 257, 402, 830, 2286, 2507
BstMBI GATC 7 cut(s) 733, 1169, 1338, 1382, 2220, 2482, 2842
BstMCI CGRYCG 1 cut(s) 563
BstMWI GCNNNNNNNGC 6 cut(s) 919, 1317, 2015, 2327, 2351, 3143
BstNI CCWGG 7 cut(s) 943, 1506, 1650, 1756, 1924, 2052, 2552
BstNSI RCATGY 3 cut(s) 1646, 2235, 2369
BstPAI GACNNNNGTC 1 cut(s) 1676
BstSFI CTRYAG 4 cut(s) 21, 303, 763, 3138
BstSLI GKGCMC 1 cut(s) 941
BstV1I GCAGC 5 cut(s) 1853, 2824, 2916, 3106, 3124
BstV2I GAAGAC 3 cut(s) 1413, 1607, 1667
BstX2I RGATCY 2 cut(s) 1169, 2482
BstYI RGATCY 2 cut(s) 1169, 2482
BsuI GTATCC 2 cut(s) 1536, 2581
BsuRI GGCC 6 cut(s) 726, 1720, 1872, 2212, 2227, 2288
BtrI CACGTC 1 cut(s) 1667
BtsI GCAGTG 2 cut(s) 760, 2242
BtsIMutI CAGTG 3 cut(s) 334, 760, 2242
BveI ACCTGC 2 cut(s) 389, 1532
Cac8I GCNNGC 6 cut(s) 17, 847, 1539, 1718, 1874, 2967
CciI TCATGA 1 cut(s) 1441
CfoI GCGC 5 cut(s) 115, 1878, 1987, 2272, 2817
Cfr10I RCCGGY 4 cut(s) 562, 1413, 1571, 2309
Cfr9I CCCGGG 1 cut(s) 2402
Csp6I GTAC 7 cut(s) 270, 472, 693, 1352, 1740, 2188, 2663
CspAI ACCGGT 2 cut(s) 562, 1413
CviQI GTAC 7 cut(s) 270, 472, 693, 1352, 1740, 2188, 2663
DinI GGCGCC 1 cut(s) 114
DpnI GATC 7 cut(s) 735, 1171, 1340, 1384, 2222, 2484, 2844
DpnII GATC 7 cut(s) 733, 1169, 1338, 1382, 2220, 2482, 2842
DraI TTTAAA 3 cut(s) 1147, 1771, 2497
DraIII CACNNNGTG 1 cut(s) 469
DriI GACNNNNNGTC 2 cut(s) 1414, 1450
EaeI YGGCCR 2 cut(s) 724, 2286
Eam1104I CTCTTC 7 cut(s) 387, 526, 1065, 1755, 2769, 3039, 3159
Eam1105I GACNNNNNGTC 2 cut(s) 1414, 1450
EarI CTCTTC 7 cut(s) 387, 526, 1065, 1755, 2769, 3039, 3159
Eco130I CCWWGG 2 cut(s) 1945, 2859
Eco147I AGGCCT 1 cut(s) 2227
Eco31I GGTCTC 1 cut(s) 830
Eco57I CTGAAG 3 cut(s) 507, 1670, 2787
Eco88I CYCGRG 2 cut(s) 2402, 2976
EcoNI CCTNNNNNAGG 3 cut(s) 1653, 2555, 2731
EcoRI GAATTC 3 cut(s) 796, 1578, 2466
EcoRII CCWGG 7 cut(s) 941, 1504, 1648, 1754, 1922, 2050, 2550
EcoT14I CCWWGG 2 cut(s) 1945, 2859
EcoT22I ATGCAT 2 cut(s) 149, 1634
EgeI GGCGCC 1 cut(s) 114
EheI GGCGCC 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 1945, 2859
Esp3I CGTCTC 1 cut(s) 2286
FalI AAGNNNNNCTT 6 cut(s) 505, 537, 703, 735, 2766, 2798
FaqI GGGAC 3 cut(s) 1208, 1508, 3006
FauNDI CATATG 2 cut(s) 1251, 2103
FbaI TGATCA 1 cut(s) 733
FblI GTMKAC 2 cut(s) 707, 2589
Fnu4HI GCNGC 6 cut(s) 1088, 1842, 2813, 2930, 3120, 3138
Fsp4HI GCNGC 6 cut(s) 1088, 1842, 2813, 2930, 3120, 3138
FspBI CTAG 7 cut(s) 27, 960, 977, 1133, 1197, 2015, 2346
FspI TGCGCA 1 cut(s) 1986
GlaI GCGC 5 cut(s) 114, 1877, 1986, 2271, 2816
GluI GCNGC 6 cut(s) 1088, 1842, 2813, 2930, 3120, 3138
GsaI CCCAGC 2 cut(s) 3036, 3137
GsuI CTGGAG 3 cut(s) 1212, 2016, 2573
HaeII RGCGCY 3 cut(s) 116, 1879, 2818
HaeIII GGCC 6 cut(s) 726, 1720, 1872, 2212, 2227, 2288
HapII CCGG 7 cut(s) 563, 1414, 1572, 1824, 2285, 2310, 2403
HhaI GCGC 5 cut(s) 115, 1878, 1987, 2272, 2817
Hin1I GRCGYC 2 cut(s) 113, 2279
Hin6I GCGC 5 cut(s) 113, 1876, 1985, 2270, 2815
HinP1I GCGC 5 cut(s) 113, 1876, 1985, 2270, 2815
HincII GTYRAC 1 cut(s) 2590
HindII GTYRAC 1 cut(s) 2590
HindIII AAGCTT 2 cut(s) 920, 2007
HpaII CCGG 7 cut(s) 563, 1414, 1572, 1824, 2285, 2310, 2403
HphI GGTGA 4 cut(s) 335, 1094, 1744, 2324
Hpy166II GTNNAC 7 cut(s) 58, 472, 708, 939, 2240, 2371, 2590
Hpy188III TCNNGA 9 cut(s) 1334, 1442, 1586, 1849, 1995, 2154, 2471, 2624, 2976
Hpy8I GTNNAC 7 cut(s) 58, 472, 708, 939, 2240, 2371, 2590
HpyCH4III ACNGT 6 cut(s) 329, 692, 705, 1222, 1489, 3059
HpyCH4IV ACGT 3 cut(s) 1666, 2140, 2279
HpyF10VI GCNNNNNNNGC 6 cut(s) 919, 1317, 2015, 2327, 2351, 3143
HpySE526I ACGT 3 cut(s) 1666, 2140, 2279
Hsp92I GRCGYC 2 cut(s) 113, 2279
HspAI GCGC 5 cut(s) 113, 1876, 1985, 2270, 2815
KasI GGCGCC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 733
Kzo9I GATC 7 cut(s) 733, 1169, 1338, 1382, 2220, 2482, 2842
LmnI GCTCC 7 cut(s) 1014, 1369, 1738, 2342, 2737, 2795, 2912
Lsp1109I GCAGC 5 cut(s) 1853, 2824, 2916, 3106, 3124
MaeI CTAG 7 cut(s) 27, 960, 977, 1133, 1197, 2015, 2346
MaeII ACGT 3 cut(s) 1666, 2140, 2279
MaeIII GTNAC 8 cut(s) 323, 699, 824, 1240, 1955, 2442, 2888, 2938
MalI GATC 7 cut(s) 735, 1171, 1340, 1384, 2222, 2484, 2844
MboI GATC 7 cut(s) 733, 1169, 1338, 1382, 2220, 2482, 2842
MfeI CAATTG 1 cut(s) 676
MflI RGATCY 2 cut(s) 1169, 2482
MhlI GDGCHC 1 cut(s) 941
MlsI TGGCCA 1 cut(s) 726
MluNI TGGCCA 1 cut(s) 726
Mly113I GGCGCC 1 cut(s) 113
MlyI GAGTC 5 cut(s) 404, 1187, 1439, 1570, 2107
MmeI TCCRAC 1 cut(s) 2890
Mox20I TGGCCA 1 cut(s) 726
Mph1103I ATGCAT 2 cut(s) 149, 1634
MroXI GAANNNNTTC 3 cut(s) 2691, 2778, 2834
MscI TGGCCA 1 cut(s) 726
MslI CAYNNNNRTG 3 cut(s) 1473, 1479, 1536
Msp20I TGGCCA 1 cut(s) 726
MspA1I CMGCKG 1 cut(s) 3137
MspI CCGG 7 cut(s) 563, 1414, 1572, 1824, 2285, 2310, 2403
MunI CAATTG 1 cut(s) 676
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 7 cut(s) 943, 1506, 1650, 1756, 1924, 2052, 2552
MwoI GCNNNNNNNGC 6 cut(s) 919, 1317, 2015, 2327, 2351, 3143
NarI GGCGCC 1 cut(s) 113
NciI CCSGG 3 cut(s) 1825, 2403, 2404
NdeI CATATG 2 cut(s) 1251, 2103
NdeII GATC 7 cut(s) 733, 1169, 1338, 1382, 2220, 2482, 2842
NlaIV GGNNCC 4 cut(s) 114, 2308, 2380, 2948
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 3 cut(s) 323, 699, 824
NsbI TGCGCA 1 cut(s) 1986
NsiI ATGCAT 2 cut(s) 149, 1634
NspI RCATGY 3 cut(s) 1646, 2235, 2369
PagI TCATGA 1 cut(s) 1441
PaqCI CACCTGC 1 cut(s) 389
PceI AGGCCT 1 cut(s) 2227
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 3 cut(s) 2691, 2778, 2834
PfeI GAWTC 6 cut(s) 182, 299, 434, 983, 2627, 2779
Pfl23II CGTACG 1 cut(s) 2662
PflFI GACNNNGTC 1 cut(s) 1220
PfoI TCCNGGA 2 cut(s) 1823, 1922
PinAI ACCGGT 2 cut(s) 562, 1413
PkrI GCNGC 6 cut(s) 1089, 1843, 2814, 2931, 3121, 3139
PleI GAGTC 5 cut(s) 404, 1187, 1439, 1569, 2106
PluTI GGCGCC 1 cut(s) 116
PpsI GAGTC 5 cut(s) 404, 1187, 1439, 1569, 2106
PshAI GACNNNNGTC 1 cut(s) 1676
PshBI ATTAAT 2 cut(s) 1212, 2715
PsiI TTATAA 1 cut(s) 1727
Psp6I CCWGG 7 cut(s) 941, 1504, 1648, 1754, 1922, 2050, 2550
PspFI CCCAGC 2 cut(s) 3032, 3133
PspGI CCWGG 7 cut(s) 941, 1504, 1648, 1754, 1922, 2050, 2550
PspLI CGTACG 1 cut(s) 2662
PspN4I GGNNCC 4 cut(s) 114, 2308, 2380, 2948
PstI CTGCAG 2 cut(s) 767, 3142
PsuI RGATCY 2 cut(s) 1169, 2482
PsyI GACNNNGTC 1 cut(s) 1220
PvuII CAGCTG 1 cut(s) 3137
RsaI GTAC 7 cut(s) 271, 473, 694, 1353, 1741, 2189, 2664
RsaNI GTAC 7 cut(s) 270, 472, 693, 1352, 1740, 2188, 2663
RseI CAYNNNNRTG 3 cut(s) 1473, 1479, 1536
SalI GTCGAC 1 cut(s) 2588
SatI GCNGC 6 cut(s) 1088, 1842, 2813, 2930, 3120, 3138
Sau3AI GATC 7 cut(s) 733, 1169, 1338, 1382, 2220, 2482, 2842
SchI GAGTC 5 cut(s) 404, 1187, 1439, 1570, 2107
SduI GDGCHC 1 cut(s) 941
SfcI CTRYAG 4 cut(s) 21, 303, 763, 3138
SfoI GGCGCC 1 cut(s) 114
SmaI CCCGGG 1 cut(s) 2404
SmiMI CAYNNNNRTG 3 cut(s) 1473, 1479, 1536
SmlI CTYRAG 2 cut(s) 1847, 3188
SmoI CTYRAG 2 cut(s) 1847, 3188
SseBI AGGCCT 1 cut(s) 2227
SsiI CCGC 2 cut(s) 593, 1088
SspDI GGCGCC 1 cut(s) 112
SspI AATATT 1 cut(s) 2035
SspMI CTAG 7 cut(s) 27, 960, 977, 1133, 1197, 2015, 2346
StuI AGGCCT 1 cut(s) 2227
StyI CCWWGG 2 cut(s) 1945, 2859
TaaI ACNGT 6 cut(s) 329, 692, 705, 1222, 1489, 3059
TaiI ACGT 3 cut(s) 1669, 2143, 2282
TaqI TCGA 7 cut(s) 180, 437, 986, 1785, 2086, 2417, 2589
TaqII GACCGA 1 cut(s) 687
TatI WGTACW 3 cut(s) 269, 471, 2187
TauI GCSGC 1 cut(s) 1090
TfiI GAWTC 6 cut(s) 182, 299, 434, 983, 2627, 2779
TscAI CASTG 3 cut(s) 334, 767, 2242
TseFI GTSAC 3 cut(s) 323, 699, 824
TseI GCWGC 5 cut(s) 1841, 2812, 2929, 3119, 3137
Tsp45I GTSAC 3 cut(s) 323, 699, 824
TspGWI ACGGA 1 cut(s) 1053
TspMI CCCGGG 1 cut(s) 2402
TspRI CASTG 3 cut(s) 334, 767, 2242
Tth111I GACNNNGTC 1 cut(s) 1220
VneI GTGCAC 1 cut(s) 937
VspI ATTAAT 2 cut(s) 1212, 2715
XagI CCTNNNNNAGG 3 cut(s) 1653, 2555, 2731
XceI RCATGY 3 cut(s) 1646, 2235, 2369
XmaI CCCGGG 1 cut(s) 2402
XmiI GTMKAC 2 cut(s) 707, 2589
XmnI GAANNNNTTC 3 cut(s) 2691, 2778, 2834
XspI CTAG 7 cut(s) 27, 960, 977, 1133, 1197, 2015, 2346
ZraI GACGTC 1 cut(s) 2280
Zsp2I ATGCAT 2 cut(s) 149, 1634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.