SNF2 domain-containing protein CLASSY
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 2891, 3402 |
| Acc65I | GGTACC | 1 cut(s) | 976 |
| AccB1I | GGYRCC | 2 cut(s) | 976, 3035 |
| AccII | CGCG | 1 cut(s) | 3803 |
| AciI | CCGC | 4 cut(s) | 290, 2259, 2848, 3803 |
| AclWI | GGATC | 3 cut(s) | 2137, 3365, 3491 |
| AcuI | CTGAAG | 6 cut(s) | 1359, 1833, 2057, 2142, 3300, 3866 |
| AdeI | CACNNNGTG | 1 cut(s) | 2133 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 168, 1658, 2294, 3284, 3796 |
| AgeI | ACCGGT | 1 cut(s) | 2052 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2053 |
| AhlI | ACTAGT | 1 cut(s) | 430 |
| AjnI | CCWGG | 8 cut(s) | 132, 210, 1867, 2146, 2287, 2552, 2698, 3058 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 813, 845 |
| Alw21I | GWGCWC | 3 cut(s) | 971, 1416, 2835 |
| Alw26I | GTCTC | 6 cut(s) | 36, 166, 1037, 1352, 1490, 3610 |
| Alw44I | GTGCAC | 1 cut(s) | 1412 |
| AlwI | GGATC | 3 cut(s) | 2137, 3365, 3491 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1382, 1760, 3773, 3844 |
| Ama87I | CYCGRG | 1 cut(s) | 3630 |
| AoxI | GGCC | 6 cut(s) | 11, 1440, 2357, 2858, 2920, 2956 |
| ApaLI | GTGCAC | 1 cut(s) | 1412 |
| ApeKI | GCWGC | 4 cut(s) | 1060, 1301, 2480, 3466 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 3887 |
| AseI | ATTAAT | 1 cut(s) | 855 |
| AsiGI | ACCGGT | 1 cut(s) | 2052 |
| Asp718I | GGTACC | 1 cut(s) | 976 |
| AspLEI | GCGC | 2 cut(s) | 2790, 3471 |
| AspS9I | GGNCC | 5 cut(s) | 126, 1464, 2868, 2920, 3391 |
| AsuHPI | GGTGA | 8 cut(s) | 103, 167, 688, 764, 1445, 2273, 2866, 3254 |
| AvaI | CYCGRG | 1 cut(s) | 3630 |
| AvaII | GGWCC | 4 cut(s) | 126, 1464, 2868, 3391 |
| BaeGI | GKGCMC | 2 cut(s) | 1416, 2727 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 780, 813, 960, 993, 1863, 1896 |
| BanI | GGYRCC | 2 cut(s) | 976, 3035 |
| BanII | GRGCYC | 1 cut(s) | 2835 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1092, 1124 |
| BauI | CACGAG | 2 cut(s) | 949, 970 |
| BbsI | GAAGAC | 3 cut(s) | 2052, 2306, 3234 |
| Bbv12I | GWGCWC | 3 cut(s) | 971, 1416, 2835 |
| BbvI | GCAGC | 4 cut(s) | 1072, 1288, 2492, 3478 |
| BceAI | ACGGC | 3 cut(s) | 1189, 1260, 1296 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2714, 2748 |
| BciT130I | CCWGG | 8 cut(s) | 134, 212, 1869, 2148, 2289, 2554, 2700, 3060 |
| BciVI | GTATCC | 1 cut(s) | 1332 |
| BclI | TGATCA | 2 cut(s) | 196, 889 |
| BcoDI | GTCTC | 6 cut(s) | 36, 166, 1037, 1352, 1490, 3610 |
| BcuI | ACTAGT | 1 cut(s) | 430 |
| BfaI | CTAG | 4 cut(s) | 168, 431, 1772, 2247 |
| BfmI | CTRYAG | 2 cut(s) | 600, 1131 |
| BfoI | RGCGCY | 1 cut(s) | 3472 |
| BfuAI | ACCTGC | 2 cut(s) | 2891, 3402 |
| BfuI | GTATCC | 1 cut(s) | 1332 |
| BisI | GCNGC | 4 cut(s) | 1061, 1302, 2481, 3467 |
| BlpI | GCTNAGC | 2 cut(s) | 1056, 2667 |
| BlsI | GCNGC | 4 cut(s) | 1062, 1303, 2482, 3468 |
| Bme1390I | CCNGG | 8 cut(s) | 134, 212, 1869, 2148, 2289, 2554, 2700, 3060 |
| Bme18I | GGWCC | 4 cut(s) | 126, 1464, 2868, 3391 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2053 |
| BmeT110I | CYCGRG | 1 cut(s) | 3630 |
| BmgT120I | GGNCC | 5 cut(s) | 126, 1464, 2868, 2920, 3391 |
| BmiI | GGNNCC | 6 cut(s) | 978, 1825, 2921, 3037, 3392, 3602 |
| BmrFI | CCNGG | 8 cut(s) | 134, 212, 1869, 2148, 2289, 2554, 2700, 3060 |
| BmrI | ACTGGG | 2 cut(s) | 2304, 3256 |
| BmsI | GCATC | 9 cut(s) | 1093, 1309, 1978, 2101, 2258, 2580, 3448, 3754, 3766 |
| BmuI | ACTGGG | 2 cut(s) | 2304, 3256 |
| BpiI | GAAGAC | 3 cut(s) | 2052, 2306, 3234 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1056, 2667 |
| BpuEI | CTTGAG | 1 cut(s) | 3242 |
| BsaAI | YACGTR | 1 cut(s) | 2378 |
| BsaJI | CCNNGG | 5 cut(s) | 2146, 2288, 2553, 2887, 3059 |
| BsaWI | WCCGGW | 1 cut(s) | 2052 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 168, 1658, 2294, 3284, 3796 |
| Bse118I | RCCGGY | 1 cut(s) | 2052 |
| Bse1I | ACTGG | 6 cut(s) | 162, 1845, 2299, 2326, 2467, 3251 |
| Bse3DI | GCAATG | 3 cut(s) | 1597, 2950, 3374 |
| BseBI | CCWGG | 8 cut(s) | 134, 212, 1869, 2148, 2289, 2554, 2700, 3060 |
| BseDI | CCNNGG | 5 cut(s) | 2146, 2288, 2553, 2887, 3059 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 168, 1658, 2294, 3284, 3796 |
| BseMI | GCAATG | 3 cut(s) | 1597, 2950, 3374 |
| BseMII | CTCAG | 7 cut(s) | 1065, 1752, 1872, 1898, 2658, 3087, 3419 |
| BseNI | ACTGG | 6 cut(s) | 162, 1845, 2299, 2326, 2467, 3251 |
| BseSI | GKGCMC | 2 cut(s) | 1416, 2727 |
| BseXI | GCAGC | 4 cut(s) | 1072, 1288, 2492, 3478 |
| BseYI | CCCAGC | 4 cut(s) | 2024, 2948, 3686, 3790 |
| BsgI | GTGCAG | 1 cut(s) | 1725 |
| Bsh1236I | CGCG | 1 cut(s) | 3803 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3801 |
| BshFI | GGCC | 6 cut(s) | 13, 1442, 2359, 2860, 2922, 2958 |
| BshNI | GGYRCC | 2 cut(s) | 976, 3035 |
| BshTI | ACCGGT | 1 cut(s) | 2052 |
| BsiEI | CGRYCG | 1 cut(s) | 3801 |
| BsiHKAI | GWGCWC | 3 cut(s) | 971, 1416, 2835 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3630 |
| BsiSI | CCGG | 1 cut(s) | 2053 |
| BslFI | GGGAC | 4 cut(s) | 2150, 2305, 3404, 3660 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 168, 1658, 2294, 3284, 3796 |
| BsmAI | GTCTC | 6 cut(s) | 36, 166, 1037, 1352, 1490, 3610 |
| BsmBI | CGTCTC | 1 cut(s) | 1352 |
| BsmFI | GGGAC | 4 cut(s) | 2150, 2305, 3404, 3660 |
| BsmI | GAATGC | 3 cut(s) | 1150, 2764, 2790 |
| BsnI | GGCC | 6 cut(s) | 13, 1442, 2359, 2860, 2922, 2958 |
| BsoBI | CYCGRG | 1 cut(s) | 3630 |
| Bsp1286I | GDGCHC | 4 cut(s) | 971, 1416, 2727, 2835 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1056, 2667 |
| BspACI | CCGC | 4 cut(s) | 290, 2259, 2848, 3803 |
| BspANI | GGCC | 6 cut(s) | 13, 1442, 2359, 2860, 2922, 2958 |
| BspCNI | CTCAG | 7 cut(s) | 1066, 1753, 1871, 1897, 2659, 3086, 3418 |
| BspFNI | CGCG | 1 cut(s) | 3803 |
| BspHI | TCATGA | 2 cut(s) | 778, 892 |
| BspLI | GGNNCC | 6 cut(s) | 978, 1825, 2921, 3037, 3392, 3602 |
| BspMI | ACCTGC | 2 cut(s) | 2891, 3402 |
| BspPI | GGATC | 3 cut(s) | 2137, 3365, 3491 |
| BspT107I | GGYRCC | 2 cut(s) | 976, 3035 |
| BsrDI | GCAATG | 3 cut(s) | 1597, 2950, 3374 |
| BsrFI | RCCGGY | 1 cut(s) | 2052 |
| BsrI | ACTGG | 6 cut(s) | 162, 1845, 2299, 2326, 2467, 3251 |
| BssAI | RCCGGY | 1 cut(s) | 2052 |
| BssECI | CCNNGG | 5 cut(s) | 2146, 2288, 2553, 2887, 3059 |
| BssSI | CACGAG | 2 cut(s) | 949, 970 |
| BssT1I | CCWWGG | 1 cut(s) | 2887 |
| Bst2BI | CACGAG | 2 cut(s) | 949, 970 |
| Bst2UI | CCWGG | 8 cut(s) | 134, 212, 1869, 2148, 2289, 2554, 2700, 3060 |
| Bst4CI | ACNGT | 5 cut(s) | 86, 578, 2131, 2595, 2845 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3302 |
| BstBAI | YACGTR | 1 cut(s) | 2378 |
| BstC8I | GCNNGC | 4 cut(s) | 700, 1423, 2357, 2485 |
| BstEII | GGTNACC | 1 cut(s) | 943 |
| BstFNI | CGCG | 1 cut(s) | 3803 |
| BstH2I | RGCGCY | 1 cut(s) | 3472 |
| BstHHI | GCGC | 2 cut(s) | 2790, 3471 |
| BstMAI | GTCTC | 6 cut(s) | 36, 166, 1037, 1352, 1490, 3610 |
| BstMCI | CGRYCG | 1 cut(s) | 3801 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1013, 1112, 1956, 2940, 3052, 3302, 3800 |
| BstNI | CCWGG | 8 cut(s) | 134, 212, 1869, 2148, 2289, 2554, 2700, 3060 |
| BstNSI | RCATGY | 2 cut(s) | 2285, 3026 |
| BstPI | GGTNACC | 1 cut(s) | 943 |
| BstSCI | CCNGG | 8 cut(s) | 132, 210, 1867, 2146, 2287, 2552, 2698, 3058 |
| BstSFI | CTRYAG | 2 cut(s) | 600, 1131 |
| BstSLI | GKGCMC | 2 cut(s) | 1416, 2727 |
| BstUI | CGCG | 1 cut(s) | 3803 |
| BstV1I | GCAGC | 4 cut(s) | 1072, 1288, 2492, 3478 |
| BstV2I | GAAGAC | 3 cut(s) | 2052, 2306, 3234 |
| BsuI | GTATCC | 1 cut(s) | 1332 |
| BsuRI | GGCC | 6 cut(s) | 13, 1442, 2359, 2860, 2922, 2958 |
| BtsIMutI | CAGTG | 8 cut(s) | 91, 1827, 2081, 2136, 2460, 2591, 3368, 3419 |
| BveI | ACCTGC | 2 cut(s) | 2891, 3402 |
| Cac8I | GCNNGC | 4 cut(s) | 700, 1423, 2357, 2485 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1382, 1760, 3773, 3844 |
| CciI | TCATGA | 2 cut(s) | 778, 892 |
| CfoI | GCGC | 2 cut(s) | 2790, 3471 |
| Cfr10I | RCCGGY | 1 cut(s) | 2052 |
| Cfr13I | GGNCC | 5 cut(s) | 126, 1464, 2868, 2920, 3391 |
| CseI | GACGC | 1 cut(s) | 1369 |
| CspAI | ACCGGT | 1 cut(s) | 2052 |
| DraI | TTTAAA | 2 cut(s) | 2769, 3148 |
| DraIII | CACNNNGTG | 1 cut(s) | 2133 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2053 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2053 |
| Ecl136II | GAGCTC | 1 cut(s) | 2833 |
| Eco130I | CCWWGG | 1 cut(s) | 2887 |
| Eco147I | AGGCCT | 1 cut(s) | 13 |
| Eco24I | GRGCYC | 1 cut(s) | 2835 |
| Eco47I | GGWCC | 4 cut(s) | 126, 1464, 2868, 3391 |
| Eco53kI | GAGCTC | 1 cut(s) | 2833 |
| Eco57I | CTGAAG | 6 cut(s) | 1359, 1833, 2057, 2142, 3300, 3866 |
| Eco88I | CYCGRG | 1 cut(s) | 3630 |
| Eco91I | GGTNACC | 1 cut(s) | 943 |
| EcoICRI | GAGCTC | 1 cut(s) | 2833 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1464, 3391 |
| EcoO65I | GGTNACC | 1 cut(s) | 943 |
| EcoRI | GAATTC | 4 cut(s) | 206, 834, 2220, 3123 |
| EcoRII | CCWGG | 8 cut(s) | 132, 210, 1867, 2146, 2287, 2552, 2698, 3058 |
| EcoT14I | CCWWGG | 1 cut(s) | 2887 |
| EcoT22I | ATGCAT | 1 cut(s) | 2273 |
| EcoT38I | GRGCYC | 1 cut(s) | 2835 |
| ErhI | CCWWGG | 1 cut(s) | 2887 |
| Esp3I | CGTCTC | 1 cut(s) | 1352 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 813, 845, 3039, 3071 |
| FaqI | GGGAC | 4 cut(s) | 2150, 2305, 3404, 3660 |
| FauNDI | CATATG | 4 cut(s) | 150, 1138, 1501, 1946 |
| FbaI | TGATCA | 2 cut(s) | 196, 889 |
| Fnu4HI | GCNGC | 4 cut(s) | 1061, 1302, 2481, 3467 |
| FriOI | GRGCYC | 1 cut(s) | 2835 |
| Fsp4HI | GCNGC | 4 cut(s) | 1061, 1302, 2481, 3467 |
| FspBI | CTAG | 4 cut(s) | 168, 431, 1772, 2247 |
| GlaI | GCGC | 2 cut(s) | 2789, 3470 |
| GluI | GCNGC | 4 cut(s) | 1061, 1302, 2481, 3467 |
| GsaI | CCCAGC | 4 cut(s) | 2028, 2952, 3690, 3794 |
| HaeII | RGCGCY | 1 cut(s) | 3472 |
| HaeIII | GGCC | 6 cut(s) | 13, 1442, 2359, 2860, 2922, 2958 |
| HapII | CCGG | 1 cut(s) | 2053 |
| HgaI | GACGC | 1 cut(s) | 1369 |
| HhaI | GCGC | 2 cut(s) | 2790, 3471 |
| Hin6I | GCGC | 2 cut(s) | 2788, 3469 |
| HinP1I | GCGC | 2 cut(s) | 2788, 3469 |
| HindIII | AAGCTT | 2 cut(s) | 3053, 3882 |
| HpaII | CCGG | 1 cut(s) | 2053 |
| HphI | GGTGA | 8 cut(s) | 103, 167, 688, 764, 1445, 2273, 2866, 3254 |
| Hpy166II | GTNNAC | 3 cut(s) | 954, 1414, 3028 |
| Hpy8I | GTNNAC | 3 cut(s) | 954, 1414, 3028 |
| HpyCH4III | ACNGT | 5 cut(s) | 86, 578, 2131, 2595, 2845 |
| HpyCH4IV | ACGT | 1 cut(s) | 2377 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1013, 1112, 1956, 2940, 3052, 3302, 3800 |
| HpySE526I | ACGT | 1 cut(s) | 2377 |
| HspAI | GCGC | 2 cut(s) | 2788, 3469 |
| KpnI | GGTACC | 1 cut(s) | 980 |
| Ksp22I | TGATCA | 2 cut(s) | 196, 889 |
| LmnI | GCTCC | 7 cut(s) | 1690, 2008, 2377, 2612, 2830, 2891, 3566 |
| Lsp1109I | GCAGC | 4 cut(s) | 1072, 1288, 2492, 3478 |
| LweI | GCATC | 9 cut(s) | 1093, 1309, 1978, 2101, 2258, 2580, 3448, 3754, 3766 |
| MaeI | CTAG | 4 cut(s) | 168, 431, 1772, 2247 |
| MaeII | ACGT | 1 cut(s) | 2377 |
| MfeI | CAATTG | 3 cut(s) | 1248, 1266, 2092 |
| MhlI | GDGCHC | 4 cut(s) | 971, 1416, 2727, 2835 |
| MlyI | GAGTC | 6 cut(s) | 103, 167, 1850, 1935, 2212, 2296 |
| MmeI | TCCRAC | 2 cut(s) | 153, 3544 |
| Mph1103I | ATGCAT | 1 cut(s) | 2273 |
| MslI | CAYNNNNRTG | 4 cut(s) | 153, 1317, 1368, 2178 |
| MspI | CCGG | 1 cut(s) | 2053 |
| MspR9I | CCNGG | 8 cut(s) | 134, 212, 1869, 2148, 2289, 2554, 2700, 3060 |
| MunI | CAATTG | 3 cut(s) | 1248, 1266, 2092 |
| Mva1269I | GAATGC | 3 cut(s) | 1150, 2764, 2790 |
| MvaI | CCWGG | 8 cut(s) | 134, 212, 1869, 2148, 2289, 2554, 2700, 3060 |
| MvnI | CGCG | 1 cut(s) | 3803 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1013, 1112, 1956, 2940, 3052, 3302, 3800 |
| NdeI | CATATG | 4 cut(s) | 150, 1138, 1501, 1946 |
| NlaIV | GGNNCC | 6 cut(s) | 978, 1825, 2921, 3037, 3392, 3602 |
| NmuCI | GTSAC | 6 cut(s) | 581, 676, 902, 1219, 2204, 3242 |
| NsiI | ATGCAT | 1 cut(s) | 2273 |
| NspI | RCATGY | 2 cut(s) | 2285, 3026 |
| PagI | TCATGA | 2 cut(s) | 778, 892 |
| PceI | AGGCCT | 1 cut(s) | 13 |
| PctI | GAATGC | 3 cut(s) | 1150, 2764, 2790 |
| PfeI | GAWTC | 9 cut(s) | 236, 1044, 1157, 1379, 1549, 1603, 1613, 1667, 1832 |
| PflFI | GACNNNGTC | 2 cut(s) | 1799, 1859 |
| PfoI | TCCNGGA | 1 cut(s) | 210 |
| PinAI | ACCGGT | 1 cut(s) | 2052 |
| PkrI | GCNGC | 4 cut(s) | 1062, 1303, 2482, 3468 |
| PleI | GAGTC | 6 cut(s) | 102, 166, 1850, 1935, 2211, 2296 |
| PpsI | GAGTC | 6 cut(s) | 102, 166, 1850, 1935, 2211, 2296 |
| Ppu21I | YACGTR | 1 cut(s) | 2378 |
| PpuMI | RGGWCCY | 2 cut(s) | 1464, 3391 |
| PshBI | ATTAAT | 1 cut(s) | 855 |
| Psp124BI | GAGCTC | 1 cut(s) | 2835 |
| Psp5II | RGGWCCY | 2 cut(s) | 1464, 3391 |
| Psp6I | CCWGG | 8 cut(s) | 132, 210, 1867, 2146, 2287, 2552, 2698, 3058 |
| PspEI | GGTNACC | 1 cut(s) | 943 |
| PspFI | CCCAGC | 4 cut(s) | 2024, 2948, 3686, 3790 |
| PspGI | CCWGG | 8 cut(s) | 132, 210, 1867, 2146, 2287, 2552, 2698, 3058 |
| PspN4I | GGNNCC | 6 cut(s) | 978, 1825, 2921, 3037, 3392, 3602 |
| PspPI | GGNCC | 5 cut(s) | 126, 1464, 2868, 2920, 3391 |
| PspPPI | RGGWCCY | 2 cut(s) | 1464, 3391 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1382, 1760, 3773, 3844 |
| PsyI | GACNNNGTC | 2 cut(s) | 1799, 1859 |
| RseI | CAYNNNNRTG | 4 cut(s) | 153, 1317, 1368, 2178 |
| SacI | GAGCTC | 1 cut(s) | 2835 |
| SatI | GCNGC | 4 cut(s) | 1061, 1302, 2481, 3467 |
| Sau96I | GGNCC | 5 cut(s) | 126, 1464, 2868, 2920, 3391 |
| SchI | GAGTC | 6 cut(s) | 103, 167, 1850, 1935, 2212, 2296 |
| ScrFI | CCNGG | 8 cut(s) | 134, 212, 1869, 2148, 2289, 2554, 2700, 3060 |
| SduI | GDGCHC | 4 cut(s) | 971, 1416, 2727, 2835 |
| SfaNI | GCATC | 9 cut(s) | 1093, 1309, 1978, 2101, 2258, 2580, 3448, 3754, 3766 |
| SfcI | CTRYAG | 2 cut(s) | 600, 1131 |
| SinI | GGWCC | 4 cut(s) | 126, 1464, 2868, 3391 |
| SmiI | ATTTAAAT | 1 cut(s) | 3148 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 153, 1317, 1368, 2178 |
| SmlI | CTYRAG | 1 cut(s) | 3221 |
| SmoI | CTYRAG | 1 cut(s) | 3221 |
| SpeI | ACTAGT | 1 cut(s) | 430 |
| SseBI | AGGCCT | 1 cut(s) | 13 |
| SsiI | CCGC | 4 cut(s) | 290, 2259, 2848, 3803 |
| SspMI | CTAG | 4 cut(s) | 168, 431, 1772, 2247 |
| SstI | GAGCTC | 1 cut(s) | 2835 |
| StuI | AGGCCT | 1 cut(s) | 13 |
| StyD4I | CCNGG | 8 cut(s) | 132, 210, 1867, 2146, 2287, 2552, 2698, 3058 |
| StyI | CCWWGG | 1 cut(s) | 2887 |
| SwaI | ATTTAAAT | 1 cut(s) | 3148 |
| TaaI | ACNGT | 5 cut(s) | 86, 578, 2131, 2595, 2845 |
| TaiI | ACGT | 1 cut(s) | 2380 |
| TaqI | TCGA | 5 cut(s) | 35, 396, 1350, 1616, 2661 |
| TaqII | GACCGA | 1 cut(s) | 3787 |
| TatI | WGTACW | 2 cut(s) | 953, 3580 |
| TfiI | GAWTC | 9 cut(s) | 236, 1044, 1157, 1379, 1549, 1603, 1613, 1667, 1832 |
| TscAI | CASTG | 8 cut(s) | 91, 1834, 2081, 2136, 2467, 2598, 3368, 3419 |
| TseFI | GTSAC | 6 cut(s) | 581, 676, 902, 1219, 2204, 3242 |
| TseI | GCWGC | 4 cut(s) | 1060, 1301, 2480, 3466 |
| Tsp45I | GTSAC | 6 cut(s) | 581, 676, 902, 1219, 2204, 3242 |
| TspGWI | ACGGA | 3 cut(s) | 695, 1644, 2926 |
| TspRI | CASTG | 8 cut(s) | 91, 1834, 2081, 2136, 2467, 2598, 3368, 3419 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1799, 1859 |
| VneI | GTGCAC | 1 cut(s) | 1412 |
| VpaK11BI | GGWCC | 4 cut(s) | 126, 1464, 2868, 3391 |
| VspI | ATTAAT | 1 cut(s) | 855 |
| XceI | RCATGY | 2 cut(s) | 2285, 3026 |
| XspI | CTAG | 4 cut(s) | 168, 431, 1772, 2247 |
| Zsp2I | ATGCAT | 1 cut(s) | 2273 |