Rh7AG229700

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001072
Physical Location & Seq
Reverse (-)
21709700 .. 21714640
4941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG229700.1

Sequence Viewer

Length: 3249 bp
ATGTTTGACTTTAGCTTGCCTATAGCTAGTAGAACAAGGAAGGGGCAGGAGAGAGTTTACAAGGAGTTCAATGAGAAAAAGAAGCAGAAGAAGAAGAAGAAGAATGAGGGTGGCTCGGCGCCCATTGATTTTGAGAAATTGGGGTCTGAATGCATAGTTCTTTCGGATGATAGCATGGAGGATGTCGATTCAGAGGGTTCTGATTTAGAAAAGAGTAAGGGAAGTGAGAAGGTGGGGAAAGGGGGGAGTGTGGAGGTTGGGGGTGTTGAGACAAGTACAAGGTTAGGAGTGGATTTGTCAGCCGATTCTGTAGCTGATTTGGATGATGGTGACAGTGAAGGTGTGAAAGTCATTAGTTTGGTTAGTGATAGTGATGATGAGGAGGTGTCAATAAATGAAGAGGCAGGTGGAGGAGACTCTGACGGCGATAAGGATAGTGATTCGAGGAGTGTAGGTTCGGACGATGAACACAATGTGTACTTGGCTGATGATGATGATGATGATGAAGATGATATTGAAAGCATCTCTTCAGATGATGATGCAAGTAAGTATTTGAATAATGAGCGACCGGTTAATTTAGATTGTGAAACTGAGGATGCGGAGAGAAGTGGAGGAGAGGGAGAAAAGGTTGGTATTTGTCAAAAGAGAAAGAGAAACATTGGAGAGGATGGTCAAAAGTTCAATTGTGTAGCACACCGTACTCGGTCACGGTCTACAAGTCATTCTTCTGGCCATGATGATCAGAGGGATGATGTTGATAACAATCACTGCAGTAGTCAGACAAATAGGCATCCTAAAATGAATTCAAAGTGCAACAATAGAAGAAGTTGTGACAATGATGAGACCTATGCTTGCAGTCTGAACAATGGGCGTGATAAATGGAATTATGTGCAGAAAGCATCTCAAAAGAATGAAGGGCTGAGGAAGCTTACTAAGAAAAAGTGCACCAGGGTAAAAAAAGATGCTAGTGCTTACAAAATTCTAGCAGATTCGATTTATGAGGATGGAGAATTGCTCCCAGAAGGGTCAGCTTCCTTCGGGGATAAAGCCGTTAAAAATGGAACTCTTCCGTTGAAGTTCTCATTTGGTGAGCCGCCAAGTATTGTTCCAGTAGAGAAGTCAGATTGTGAGAAAGAACTAGAGAACCTTTTTAAAGAAATGGAATTTGCTATTAGATCTGCTCAGATTGGTTCTACTGACTCTAGTGAGGTTGAAATTAATGACACAGTCCCTCCAGTTAAGGAAGTTACTCAGCATATGCTTTGTAGTCAAGGGAAACATCATCTTATACTTGATGAAGAAATTGGACTGATTTGCAAATTTTGCCCTCATGTGCATCAGGAGATCAAGTATATTGTACCAGAATTTGCTCCAAACCCTTATGGACGATCTGGCAGGAGATTTTATGAAGAAGACAACCGGTCTATTCCTGTTGAGCTACAATGTCATGACTCTGGGTCTGGCTTTAATTCCCATGCTCATGTTGATGGCACGGTATGGGACTTAATTCCTGGTGTTAAAAGTAGTGTGTATCCTCATCAGCGTGCAGGTTTTGAATTTATTTGGAGTCATATAGCCGGTGGAATTCATCTTGAAAAGTTGCAGAAGACAAGTAGTGCTGATGGTGGGGGTGGATGCATAATATCACATGCACCTGGAACAGGGAAGACACGTCTGACCATTGTCTTTCTTCAGGCATACATGAGATTTAACCCAAAATGCAGGCCACTTATAATCGCTCCTCGTACCATGCTTCTCACCTGGGAAGAGGAGTTTAAAAAATGGGGCTTCGATGTTCCCTTTCACAATCTCAACAATCAGAATTTATCCGGGAAGGAGAATAAAGCAGCTCTCAAGATTTTGGTGCAAGATGGAGGCCAGCGCCATGTGAAAAGTGTGGATGGTAGTCGTTGGTTGAAGTTATATTCCTGGAAAAAGGAAAGAAGCATCCTTGGAATTAGTTACAGACTTTTTGAGAAACTTTCTACTGCGCATAATTCTGGAGGCAAGAAAGCTTACCTAGCTAAGACAATGAGGAATATTCTATTAGACTTTCCTGGTATTGTAGTCTTTGATGAAGGGCATACACCTCGAAATGATAAGAGTCATATGTGGAAGGCTTCATCAAATATCAAAACACATAGACGTATTATTCTCTCAGGAACTCCTTTTCAAAACAATTTTGATGAGCTGTACAATACAATTTGCTTGGCAAGGCCAGACTGGATCAGGCCTACATGCAGTGGACGAAGCCTAAAAAGAAATGTAGTGAAAGCGCAACAGACGTCTCCGGCCAAATACATTACCAAAGGTGCCGGTGATAAAGCAAAACAAGCTGAGGAAATAGGAGCTAGAATTGCCCCAGTTGTGCATGTTTACAGAGGTTCCATATTACGAGATACACTTCCCGGGTTGAGGAACTCGATTGTTGTTTTACAGCCAAGCAAGTTACAGAAAGAAATTTCTACAAGAATTCAAGAGAGGAAGGATCTTCCATTCTTTAAAGATGAACATTACGAGACTTTAATATCTGTTCATCCTTCGGCTTTGCTGAACCTGGAGAAGGAAAAGAGGGTATCCTTGCTTAATCAGGTCGACTTGGAGAGGTTAAAGGAAAAAAGATTAAATCCTGAATCTGGGATGAAGGCAAAGTTTGTGATTGAACTCGTACGGCTTAGTGATGCTATGAATGAAAGAGTTCTGGTGTTCAGTCAGTATATTAATGCCTTGACCTTTTTAAGGGAGCTTTTGAAATCTCAGTTTCAATGGACTGAAGGGGAAGAGATTCTTTATATGTATGGAGCAGATGATGAAAAGCAGCGCCAAACATCAATGAAGGCTTTCAATGATCCATCAAGCAGAGCCAAGGTATTATTAGCCTCAACGAAAGGTTGTAACGAAGGAATAAATTTAGTTGGAGCTTCAAGGGTTGTGCTGCTTGATGTTACATGGAACCCATCTGTTGAGAGGCAAGCTATATCCCGAGCATACCGATTGGGACAGAAGAAAATAGTGTTCATCTACCATCTTCTCATTGCTGGGGCAAGAGAAGAGGATAAACACAGTAGGCAAGTTGAGAAGCATCATCTGTCTGAATTGGTATTTTCTTGTTCAGATATGGAAGCTGCCAAGAAAATCCCAGCTGCAGTTGCAGAGGACAAGATTTTGGAAGAGATGGTTCAGCATGAGAAACTCAAGCATATATTTGAAAAGATAACATTACTGGATGAAGCCTCATGTTATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

1082

Amino Acids

121.43

Weight (kDa)

6.22

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 531 - 724 2.6e-08 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 542 - 852 1.7e-21 SNF2-related domain
Helicase_C PF00271 882 - 1000 8.6e-18 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1733
AarI CACCTGC 1 cut(s) 395
AatII GACGTC 1 cut(s) 2288
Acc16I TGCGCA 1 cut(s) 1992
Acc36I ACCTGC 2 cut(s) 395, 1538
AccB1I GGYRCC 2 cut(s) 118, 2312
AccI GTMKAC 2 cut(s) 713, 2595
AciI CCGC 2 cut(s) 599, 1094
AclWI GGATC 3 cut(s) 2234, 2496, 2843
AcoI YGGCCR 2 cut(s) 730, 2292
AcuI CTGAAG 3 cut(s) 513, 1676, 2793
AcyI GRCGYC 2 cut(s) 119, 2285
AdeI CACNNNGTG 1 cut(s) 475
AfaI GTAC 7 cut(s) 277, 479, 700, 1359, 1747, 2195, 2670
AfiI CCNNNNNNNGG 5 cut(s) 1661, 2415, 2563, 2636, 2739
AflIII ACRYGT 1 cut(s) 1670
AgeI ACCGGT 2 cut(s) 568, 1419
AhdI GACNNNNNGTC 2 cut(s) 1420, 1456
AjiI CACGTC 1 cut(s) 1673
AjnI CCWGG 7 cut(s) 947, 1510, 1654, 1760, 1928, 2056, 2556
AloI GAACNNNNNNTCC 2 cut(s) 439, 471
Alw21I GWGCWC 1 cut(s) 947
Alw26I GTCTC 5 cut(s) 263, 408, 836, 2292, 2513
Alw44I GTGCAC 1 cut(s) 943
AlwI GGATC 3 cut(s) 2234, 2496, 2843
Ama87I CYCGRG 2 cut(s) 2408, 2982
AoxI GGCC 6 cut(s) 730, 1724, 1876, 2216, 2231, 2292
ApaLI GTGCAC 1 cut(s) 943
ApeKI GCWGC 5 cut(s) 1847, 2818, 2935, 3125, 3143
AseI ATTAAT 2 cut(s) 1218, 2721
AsiGI ACCGGT 2 cut(s) 568, 1419
Asp700I GAANNNNTTC 3 cut(s) 2697, 2784, 2840
AspLEI GCGC 5 cut(s) 121, 1884, 1993, 2278, 2823
AsuC2I CCSGG 3 cut(s) 1831, 2409, 2410
AsuHPI GGTGA 4 cut(s) 341, 1100, 1750, 2330
AvaI CYCGRG 2 cut(s) 2408, 2982
BaeGI GKGCMC 1 cut(s) 947
BalI TGGCCA 1 cut(s) 732
BanI GGYRCC 2 cut(s) 118, 2312
BbsI GAAGAC 3 cut(s) 1419, 1613, 1673
Bbv12I GWGCWC 1 cut(s) 947
BbvCI CCTCAGC 2 cut(s) 920, 2337
BbvI GCAGC 5 cut(s) 1859, 2830, 2922, 3112, 3130
BceAI ACGGC 3 cut(s) 439, 1034, 2687
BcgI CGANNNNNNTGC 2 cut(s) 2072, 2106
BciT130I CCWGG 7 cut(s) 949, 1512, 1656, 1762, 1930, 2058, 2558
BciVI GTATCC 2 cut(s) 1542, 2587
BclI TGATCA 1 cut(s) 739
BcnI CCSGG 3 cut(s) 1831, 2409, 2410
BcoDI GTCTC 5 cut(s) 263, 408, 836, 2292, 2513
BfaI CTAG 7 cut(s) 27, 966, 983, 1139, 1203, 2021, 2352
BfmI CTRYAG 4 cut(s) 21, 309, 769, 3144
BfoI RGCGCY 3 cut(s) 122, 1885, 2824
BfuAI ACCTGC 2 cut(s) 395, 1538
BfuI GTATCC 2 cut(s) 1542, 2587
BglII AGATCT 1 cut(s) 1175
BisI GCNGC 6 cut(s) 1094, 1848, 2819, 2936, 3126, 3144
BlsI GCNGC 6 cut(s) 1095, 1849, 2820, 2937, 3127, 3145
BmeRI GACNNNNNGTC 2 cut(s) 1420, 1456
BmeT110I CYCGRG 2 cut(s) 2408, 2982
BmgBI CACGTC 1 cut(s) 1673
BmiI GGNNCC 4 cut(s) 120, 2314, 2386, 2954
BmrI ACTGGG 1 cut(s) 2357
BmuI ACTGGG 1 cut(s) 2357
BoxI GACNNNNGTC 1 cut(s) 1682
BpiI GAAGAC 3 cut(s) 1419, 1613, 1673
BplI GAGNNNNNCTC 4 cut(s) 98, 130, 999, 1031
BpmI CTGGAG 3 cut(s) 1218, 2022, 2579
Bpu10I CCTNAGC 2 cut(s) 920, 2337
BpuEI CTTGAG 2 cut(s) 1838, 3179
BpuMI CCSGG 3 cut(s) 1831, 2409, 2410
BsaBI GATNNNNATC 1 cut(s) 762
BsaHI GRCGYC 2 cut(s) 119, 2285
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 5 cut(s) 948, 1761, 1951, 2408, 2865
BsaWI WCCGGW 2 cut(s) 568, 1419
BsaXI ACNNNNNCTCC 8 cut(s) 439, 469, 612, 642, 1216, 1246, 1334, 1364
Bsc4I CCNNNNNNNGG 5 cut(s) 1661, 2415, 2563, 2636, 2739
Bse118I RCCGGY 4 cut(s) 568, 1419, 1577, 2315
Bse1I ACTGG 5 cut(s) 1109, 1235, 2228, 2363, 3228
Bse3DI GCAATG 1 cut(s) 3033
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 7 cut(s) 949, 1512, 1656, 1762, 1930, 2058, 2558
BseDI CCNNGG 5 cut(s) 948, 1761, 1951, 2408, 2865
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 5 cut(s) 1661, 2415, 2563, 2636, 2739
BseMI GCAATG 1 cut(s) 3033
BseMII CTCAG 7 cut(s) 582, 911, 1196, 1265, 2172, 2328, 2771
BseNI ACTGG 5 cut(s) 1109, 1235, 2228, 2363, 3228
BseRI GAGGAG 6 cut(s) 395, 426, 460, 627, 1731, 1784
BseSI GKGCMC 1 cut(s) 947
BseXI GCAGC 5 cut(s) 1859, 2830, 2922, 3112, 3130
BseYI CCCAGC 2 cut(s) 3038, 3139
BsgI GTGCAG 2 cut(s) 911, 1566
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 6 cut(s) 732, 1726, 1878, 2218, 2233, 2294
BshNI GGYRCC 2 cut(s) 118, 2312
BshTI ACCGGT 2 cut(s) 568, 1419
BsiEI CGRYCG 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 947
BsiHKCI CYCGRG 2 cut(s) 2408, 2982
BsiSI CCGG 7 cut(s) 569, 1420, 1578, 1830, 2291, 2316, 2409
BsiWI CGTACG 1 cut(s) 2668
BslFI GGGAC 3 cut(s) 1214, 1514, 3012
BslI CCNNNNNNNGG 5 cut(s) 1661, 2415, 2563, 2636, 2739
BsmAI GTCTC 5 cut(s) 263, 408, 836, 2292, 2513
BsmBI CGTCTC 1 cut(s) 2292
BsmFI GGGAC 3 cut(s) 1214, 1514, 3012
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 6 cut(s) 732, 1726, 1878, 2218, 2233, 2294
Bso31I GGTCTC 1 cut(s) 836
BsoBI CYCGRG 2 cut(s) 2408, 2982
Bsp1286I GDGCHC 1 cut(s) 947
Bsp1407I TGTACA 1 cut(s) 2193
Bsp143I GATC 7 cut(s) 739, 1175, 1344, 1388, 2226, 2488, 2848
BspACI CCGC 2 cut(s) 599, 1094
BspANI GGCC 6 cut(s) 732, 1726, 1878, 2218, 2233, 2294
BspCNI CTCAG 7 cut(s) 583, 912, 1195, 1264, 2171, 2329, 2770
BspHI TCATGA 1 cut(s) 1447
BspLI GGNNCC 4 cut(s) 120, 2314, 2386, 2954
BspMAI CTGCAG 2 cut(s) 773, 3148
BspMI ACCTGC 2 cut(s) 395, 1538
BspPI GGATC 3 cut(s) 2234, 2496, 2843
BspT107I GGYRCC 2 cut(s) 118, 2312
BspTNI GGTCTC 1 cut(s) 836
BsrDI GCAATG 1 cut(s) 3033
BsrFI RCCGGY 4 cut(s) 568, 1419, 1577, 2315
BsrGI TGTACA 1 cut(s) 2193
BsrI ACTGG 5 cut(s) 1109, 1235, 2228, 2363, 3228
BssAI RCCGGY 4 cut(s) 568, 1419, 1577, 2315
BssECI CCNNGG 5 cut(s) 948, 1761, 1951, 2408, 2865
BssMI GATC 7 cut(s) 739, 1175, 1344, 1388, 2226, 2488, 2848
BssNI GRCGYC 2 cut(s) 119, 2285
BssT1I CCWWGG 2 cut(s) 1951, 2865
Bst2UI CCWGG 7 cut(s) 949, 1512, 1656, 1762, 1930, 2058, 2558
Bst4CI ACNGT 6 cut(s) 335, 698, 711, 1228, 1495, 3065
Bst6I CTCTTC 7 cut(s) 393, 532, 1071, 1761, 2775, 3045, 3165
BstACI GRCGYC 2 cut(s) 119, 2285
BstAPI GCANNNNNTGC 1 cut(s) 1323
BstAUI TGTACA 1 cut(s) 2193
BstC8I GCNNGC 6 cut(s) 17, 853, 1545, 1724, 1880, 2973
BstENI CCTNNNNNAGG 3 cut(s) 1659, 2561, 2737
BstH2I RGCGCY 3 cut(s) 122, 1885, 2824
BstHHI GCGC 5 cut(s) 121, 1884, 1993, 2278, 2823
BstKTI GATC 7 cut(s) 742, 1178, 1347, 1391, 2229, 2491, 2851
BstMAI GTCTC 5 cut(s) 263, 408, 836, 2292, 2513
BstMBI GATC 7 cut(s) 739, 1175, 1344, 1388, 2226, 2488, 2848
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 6 cut(s) 925, 1323, 2021, 2333, 2357, 3149
BstNI CCWGG 7 cut(s) 949, 1512, 1656, 1762, 1930, 2058, 2558
BstNSI RCATGY 3 cut(s) 1652, 2241, 2375
BstPAI GACNNNNGTC 1 cut(s) 1682
BstSFI CTRYAG 4 cut(s) 21, 309, 769, 3144
BstSLI GKGCMC 1 cut(s) 947
BstV1I GCAGC 5 cut(s) 1859, 2830, 2922, 3112, 3130
BstV2I GAAGAC 3 cut(s) 1419, 1613, 1673
BstX2I RGATCY 2 cut(s) 1175, 2488
BstYI RGATCY 2 cut(s) 1175, 2488
BsuI GTATCC 2 cut(s) 1542, 2587
BsuRI GGCC 6 cut(s) 732, 1726, 1878, 2218, 2233, 2294
BtrI CACGTC 1 cut(s) 1673
BtsI GCAGTG 2 cut(s) 766, 2248
BtsIMutI CAGTG 3 cut(s) 340, 766, 2248
BveI ACCTGC 2 cut(s) 395, 1538
Cac8I GCNNGC 6 cut(s) 17, 853, 1545, 1724, 1880, 2973
CciI TCATGA 1 cut(s) 1447
CfoI GCGC 5 cut(s) 121, 1884, 1993, 2278, 2823
Cfr10I RCCGGY 4 cut(s) 568, 1419, 1577, 2315
Cfr9I CCCGGG 1 cut(s) 2408
Csp6I GTAC 7 cut(s) 276, 478, 699, 1358, 1746, 2194, 2669
CspAI ACCGGT 2 cut(s) 568, 1419
CviQI GTAC 7 cut(s) 276, 478, 699, 1358, 1746, 2194, 2669
DinI GGCGCC 1 cut(s) 120
DpnI GATC 7 cut(s) 741, 1177, 1346, 1390, 2228, 2490, 2850
DpnII GATC 7 cut(s) 739, 1175, 1344, 1388, 2226, 2488, 2848
DraI TTTAAA 3 cut(s) 1153, 1777, 2503
DraIII CACNNNGTG 1 cut(s) 475
DriI GACNNNNNGTC 2 cut(s) 1420, 1456
EaeI YGGCCR 2 cut(s) 730, 2292
Eam1104I CTCTTC 7 cut(s) 393, 532, 1071, 1761, 2775, 3045, 3165
Eam1105I GACNNNNNGTC 2 cut(s) 1420, 1456
EarI CTCTTC 7 cut(s) 393, 532, 1071, 1761, 2775, 3045, 3165
Eco130I CCWWGG 2 cut(s) 1951, 2865
Eco147I AGGCCT 1 cut(s) 2233
Eco31I GGTCTC 1 cut(s) 836
Eco57I CTGAAG 3 cut(s) 513, 1676, 2793
Eco88I CYCGRG 2 cut(s) 2408, 2982
EcoNI CCTNNNNNAGG 3 cut(s) 1659, 2561, 2737
EcoRI GAATTC 3 cut(s) 802, 1584, 2472
EcoRII CCWGG 7 cut(s) 947, 1510, 1654, 1760, 1928, 2056, 2556
EcoT14I CCWWGG 2 cut(s) 1951, 2865
EcoT22I ATGCAT 2 cut(s) 155, 1640
EgeI GGCGCC 1 cut(s) 120
EheI GGCGCC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 1951, 2865
Esp3I CGTCTC 1 cut(s) 2292
FalI AAGNNNNNCTT 6 cut(s) 511, 543, 709, 741, 2772, 2804
FaqI GGGAC 3 cut(s) 1214, 1514, 3012
FauNDI CATATG 2 cut(s) 1257, 2109
FbaI TGATCA 1 cut(s) 739
FblI GTMKAC 2 cut(s) 713, 2595
Fnu4HI GCNGC 6 cut(s) 1094, 1848, 2819, 2936, 3126, 3144
Fsp4HI GCNGC 6 cut(s) 1094, 1848, 2819, 2936, 3126, 3144
FspBI CTAG 7 cut(s) 27, 966, 983, 1139, 1203, 2021, 2352
FspI TGCGCA 1 cut(s) 1992
GlaI GCGC 5 cut(s) 120, 1883, 1992, 2277, 2822
GluI GCNGC 6 cut(s) 1094, 1848, 2819, 2936, 3126, 3144
GsaI CCCAGC 2 cut(s) 3042, 3143
GsuI CTGGAG 3 cut(s) 1218, 2022, 2579
HaeII RGCGCY 3 cut(s) 122, 1885, 2824
HaeIII GGCC 6 cut(s) 732, 1726, 1878, 2218, 2233, 2294
HapII CCGG 7 cut(s) 569, 1420, 1578, 1830, 2291, 2316, 2409
HhaI GCGC 5 cut(s) 121, 1884, 1993, 2278, 2823
Hin1I GRCGYC 2 cut(s) 119, 2285
Hin6I GCGC 5 cut(s) 119, 1882, 1991, 2276, 2821
HinP1I GCGC 5 cut(s) 119, 1882, 1991, 2276, 2821
HincII GTYRAC 1 cut(s) 2596
HindII GTYRAC 1 cut(s) 2596
HindIII AAGCTT 2 cut(s) 926, 2013
HpaII CCGG 7 cut(s) 569, 1420, 1578, 1830, 2291, 2316, 2409
HphI GGTGA 4 cut(s) 341, 1100, 1750, 2330
Hpy166II GTNNAC 7 cut(s) 58, 478, 714, 945, 2246, 2377, 2596
Hpy188III TCNNGA 9 cut(s) 1340, 1448, 1592, 1855, 2001, 2160, 2477, 2630, 2982
Hpy8I GTNNAC 7 cut(s) 58, 478, 714, 945, 2246, 2377, 2596
HpyCH4III ACNGT 6 cut(s) 335, 698, 711, 1228, 1495, 3065
HpyCH4IV ACGT 3 cut(s) 1672, 2146, 2285
HpyF10VI GCNNNNNNNGC 6 cut(s) 925, 1323, 2021, 2333, 2357, 3149
HpySE526I ACGT 3 cut(s) 1672, 2146, 2285
Hsp92I GRCGYC 2 cut(s) 119, 2285
HspAI GCGC 5 cut(s) 119, 1882, 1991, 2276, 2821
KasI GGCGCC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 7 cut(s) 739, 1175, 1344, 1388, 2226, 2488, 2848
LmnI GCTCC 7 cut(s) 1020, 1375, 1744, 2348, 2743, 2801, 2918
Lsp1109I GCAGC 5 cut(s) 1859, 2830, 2922, 3112, 3130
MaeI CTAG 7 cut(s) 27, 966, 983, 1139, 1203, 2021, 2352
MaeII ACGT 3 cut(s) 1672, 2146, 2285
MaeIII GTNAC 8 cut(s) 329, 705, 830, 1246, 1961, 2448, 2894, 2944
MalI GATC 7 cut(s) 741, 1177, 1346, 1390, 2228, 2490, 2850
MboI GATC 7 cut(s) 739, 1175, 1344, 1388, 2226, 2488, 2848
MfeI CAATTG 1 cut(s) 682
MflI RGATCY 2 cut(s) 1175, 2488
MhlI GDGCHC 1 cut(s) 947
MlsI TGGCCA 1 cut(s) 732
MluNI TGGCCA 1 cut(s) 732
Mly113I GGCGCC 1 cut(s) 119
MlyI GAGTC 5 cut(s) 410, 1193, 1445, 1576, 2113
MmeI TCCRAC 1 cut(s) 2896
Mox20I TGGCCA 1 cut(s) 732
Mph1103I ATGCAT 2 cut(s) 155, 1640
MroXI GAANNNNTTC 3 cut(s) 2697, 2784, 2840
MscI TGGCCA 1 cut(s) 732
MslI CAYNNNNRTG 3 cut(s) 1479, 1485, 1542
Msp20I TGGCCA 1 cut(s) 732
MspA1I CMGCKG 1 cut(s) 3143
MspI CCGG 7 cut(s) 569, 1420, 1578, 1830, 2291, 2316, 2409
MunI CAATTG 1 cut(s) 682
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 7 cut(s) 949, 1512, 1656, 1762, 1930, 2058, 2558
MwoI GCNNNNNNNGC 6 cut(s) 925, 1323, 2021, 2333, 2357, 3149
NarI GGCGCC 1 cut(s) 119
NciI CCSGG 3 cut(s) 1831, 2409, 2410
NdeI CATATG 2 cut(s) 1257, 2109
NdeII GATC 7 cut(s) 739, 1175, 1344, 1388, 2226, 2488, 2848
NlaIV GGNNCC 4 cut(s) 120, 2314, 2386, 2954
NmeAIII GCCGAG 1 cut(s) 95
NmuCI GTSAC 3 cut(s) 329, 705, 830
NsbI TGCGCA 1 cut(s) 1992
NsiI ATGCAT 2 cut(s) 155, 1640
NspI RCATGY 3 cut(s) 1652, 2241, 2375
PagI TCATGA 1 cut(s) 1447
PaqCI CACCTGC 1 cut(s) 395
PceI AGGCCT 1 cut(s) 2233
PctI GAATGC 1 cut(s) 155
PdmI GAANNNNTTC 3 cut(s) 2697, 2784, 2840
PfeI GAWTC 6 cut(s) 188, 305, 440, 989, 2633, 2785
Pfl23II CGTACG 1 cut(s) 2668
PflFI GACNNNGTC 1 cut(s) 1226
PfoI TCCNGGA 2 cut(s) 1829, 1928
PinAI ACCGGT 2 cut(s) 568, 1419
PkrI GCNGC 6 cut(s) 1095, 1849, 2820, 2937, 3127, 3145
PleI GAGTC 5 cut(s) 410, 1193, 1445, 1575, 2112
PluTI GGCGCC 1 cut(s) 122
PpsI GAGTC 5 cut(s) 410, 1193, 1445, 1575, 2112
PshAI GACNNNNGTC 1 cut(s) 1682
PshBI ATTAAT 2 cut(s) 1218, 2721
PsiI TTATAA 1 cut(s) 1733
Psp6I CCWGG 7 cut(s) 947, 1510, 1654, 1760, 1928, 2056, 2556
PspFI CCCAGC 2 cut(s) 3038, 3139
PspGI CCWGG 7 cut(s) 947, 1510, 1654, 1760, 1928, 2056, 2556
PspLI CGTACG 1 cut(s) 2668
PspN4I GGNNCC 4 cut(s) 120, 2314, 2386, 2954
PstI CTGCAG 2 cut(s) 773, 3148
PsuI RGATCY 2 cut(s) 1175, 2488
PsyI GACNNNGTC 1 cut(s) 1226
PvuII CAGCTG 1 cut(s) 3143
RsaI GTAC 7 cut(s) 277, 479, 700, 1359, 1747, 2195, 2670
RsaNI GTAC 7 cut(s) 276, 478, 699, 1358, 1746, 2194, 2669
RseI CAYNNNNRTG 3 cut(s) 1479, 1485, 1542
SalI GTCGAC 1 cut(s) 2594
SatI GCNGC 6 cut(s) 1094, 1848, 2819, 2936, 3126, 3144
Sau3AI GATC 7 cut(s) 739, 1175, 1344, 1388, 2226, 2488, 2848
SchI GAGTC 5 cut(s) 410, 1193, 1445, 1576, 2113
SduI GDGCHC 1 cut(s) 947
SfcI CTRYAG 4 cut(s) 21, 309, 769, 3144
SfoI GGCGCC 1 cut(s) 120
SmaI CCCGGG 1 cut(s) 2410
SmiMI CAYNNNNRTG 3 cut(s) 1479, 1485, 1542
SmlI CTYRAG 2 cut(s) 1853, 3194
SmoI CTYRAG 2 cut(s) 1853, 3194
SseBI AGGCCT 1 cut(s) 2233
SsiI CCGC 2 cut(s) 599, 1094
SspDI GGCGCC 1 cut(s) 118
SspI AATATT 1 cut(s) 2041
SspMI CTAG 7 cut(s) 27, 966, 983, 1139, 1203, 2021, 2352
StuI AGGCCT 1 cut(s) 2233
StyI CCWWGG 2 cut(s) 1951, 2865
TaaI ACNGT 6 cut(s) 335, 698, 711, 1228, 1495, 3065
TaiI ACGT 3 cut(s) 1675, 2149, 2288
TaqI TCGA 7 cut(s) 186, 443, 992, 1791, 2092, 2423, 2595
TaqII GACCGA 1 cut(s) 693
TatI WGTACW 3 cut(s) 275, 477, 2193
TauI GCSGC 1 cut(s) 1096
TfiI GAWTC 6 cut(s) 188, 305, 440, 989, 2633, 2785
TscAI CASTG 3 cut(s) 340, 773, 2248
TseFI GTSAC 3 cut(s) 329, 705, 830
TseI GCWGC 5 cut(s) 1847, 2818, 2935, 3125, 3143
Tsp45I GTSAC 3 cut(s) 329, 705, 830
TspGWI ACGGA 1 cut(s) 1059
TspMI CCCGGG 1 cut(s) 2408
TspRI CASTG 3 cut(s) 340, 773, 2248
Tth111I GACNNNGTC 1 cut(s) 1226
VneI GTGCAC 1 cut(s) 943
VspI ATTAAT 2 cut(s) 1218, 2721
XagI CCTNNNNNAGG 3 cut(s) 1659, 2561, 2737
XceI RCATGY 3 cut(s) 1652, 2241, 2375
XmaI CCCGGG 1 cut(s) 2408
XmiI GTMKAC 2 cut(s) 713, 2595
XmnI GAANNNNTTC 3 cut(s) 2697, 2784, 2840
XspI CTAG 7 cut(s) 27, 966, 983, 1139, 1203, 2021, 2352
ZraI GACGTC 1 cut(s) 2286
Zsp2I ATGCAT 2 cut(s) 155, 1640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.