SNF2 domain-containing protein CLASSY
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 972, 1547 |
| AarI | CACCTGC | 1 cut(s) | 389 |
| Acc16I | TGCGCA | 1 cut(s) | 1806 |
| Acc36I | ACCTGC | 2 cut(s) | 389, 1352 |
| AccB1I | GGYRCC | 1 cut(s) | 112 |
| AccI | GTMKAC | 2 cut(s) | 686, 2187 |
| AciI | CCGC | 2 cut(s) | 572, 1067 |
| AclWI | GGATC | 2 cut(s) | 2048, 2435 |
| AcoI | YGGCCR | 2 cut(s) | 477, 703 |
| AcsI | RAATTY | 6 cut(s) | 775, 951, 1136, 1370, 1398, 2500 |
| AcuI | CTGAAG | 3 cut(s) | 501, 1490, 2385 |
| AcyI | GRCGYC | 1 cut(s) | 113 |
| AdeI | CACNNNGTG | 1 cut(s) | 469 |
| AfaI | GTAC | 6 cut(s) | 271, 473, 673, 1561, 2009, 2262 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1440, 1475, 2155, 2228 |
| AflIII | ACRYGT | 1 cut(s) | 1484 |
| AgeI | ACCGGT | 2 cut(s) | 541, 1233 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1234, 1270 |
| AjiI | CACGTC | 1 cut(s) | 1487 |
| AjnI | CCWGG | 7 cut(s) | 920, 1324, 1468, 1574, 1742, 1870, 2148 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 433, 465 |
| Alw21I | GWGCWC | 1 cut(s) | 920 |
| Alw26I | GTCTC | 4 cut(s) | 257, 402, 809, 2105 |
| Alw44I | GTGCAC | 1 cut(s) | 916 |
| AlwI | GGATC | 2 cut(s) | 2048, 2435 |
| Ama87I | CYCGRG | 1 cut(s) | 2574 |
| AoxI | GGCC | 6 cut(s) | 477, 703, 1538, 1690, 2030, 2045 |
| ApaLI | GTGCAC | 1 cut(s) | 916 |
| ApeKI | GCWGC | 5 cut(s) | 1661, 2410, 2527, 2717, 2735 |
| ApoI | RAATTY | 6 cut(s) | 775, 951, 1136, 1370, 1398, 2500 |
| AseI | ATTAAT | 1 cut(s) | 2313 |
| AsiGI | ACCGGT | 2 cut(s) | 541, 1233 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2289, 2376, 2432 |
| AspLEI | GCGC | 4 cut(s) | 115, 1698, 1807, 2415 |
| AspS9I | GGNCC | 2 cut(s) | 539, 2335 |
| AsuC2I | CCSGG | 1 cut(s) | 1645 |
| AsuHPI | GGTGA | 3 cut(s) | 335, 1073, 1564 |
| AvaI | CYCGRG | 1 cut(s) | 2574 |
| AvaII | GGWCC | 2 cut(s) | 539, 2335 |
| BaeGI | GKGCMC | 1 cut(s) | 920 |
| BalI | TGGCCA | 1 cut(s) | 705 |
| BanI | GGYRCC | 1 cut(s) | 112 |
| BbsI | GAAGAC | 3 cut(s) | 1233, 1427, 1487 |
| Bbv12I | GWGCWC | 1 cut(s) | 920 |
| BbvCI | CCTCAGC | 1 cut(s) | 893 |
| BbvI | GCAGC | 5 cut(s) | 1673, 2422, 2514, 2704, 2722 |
| BceAI | ACGGC | 3 cut(s) | 433, 1007, 2279 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1886, 1920 |
| BciT130I | CCWGG | 7 cut(s) | 922, 1326, 1470, 1576, 1744, 1872, 2150 |
| BciVI | GTATCC | 2 cut(s) | 1356, 2179 |
| BclI | TGATCA | 1 cut(s) | 712 |
| BcnI | CCSGG | 1 cut(s) | 1645 |
| BcoDI | GTCTC | 4 cut(s) | 257, 402, 809, 2105 |
| BfaI | CTAG | 6 cut(s) | 27, 939, 956, 1112, 1176, 1835 |
| BfmI | CTRYAG | 4 cut(s) | 21, 303, 742, 2736 |
| BfoI | RGCGCY | 3 cut(s) | 116, 1699, 2416 |
| BfuAI | ACCTGC | 2 cut(s) | 389, 1352 |
| BfuI | GTATCC | 2 cut(s) | 1356, 2179 |
| BglII | AGATCT | 1 cut(s) | 1148 |
| BisI | GCNGC | 6 cut(s) | 1067, 1662, 2411, 2528, 2718, 2736 |
| BlsI | GCNGC | 6 cut(s) | 1068, 1663, 2412, 2529, 2719, 2737 |
| Bme1390I | CCNGG | 8 cut(s) | 922, 1326, 1470, 1576, 1645, 1744, 1872, 2150 |
| Bme18I | GGWCC | 2 cut(s) | 539, 2335 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1234, 1270 |
| BmeT110I | CYCGRG | 1 cut(s) | 2574 |
| BmgBI | CACGTC | 1 cut(s) | 1487 |
| BmgT120I | GGNCC | 2 cut(s) | 539, 2335 |
| BmiI | GGNNCC | 5 cut(s) | 114, 540, 1185, 2336, 2546 |
| BmrFI | CCNGG | 8 cut(s) | 922, 1326, 1470, 1576, 1645, 1744, 1872, 2150 |
| BmsI | GCATC | 9 cut(s) | 519, 559, 772, 881, 925, 1439, 1770, 2263, 2683 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1496 |
| BpiI | GAAGAC | 3 cut(s) | 1233, 1427, 1487 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 92, 124, 972, 1004 |
| BpmI | CTGGAG | 2 cut(s) | 1836, 2171 |
| Bpu10I | CCTNAGC | 1 cut(s) | 893 |
| BpuEI | CTTGAG | 2 cut(s) | 1652, 2771 |
| BpuMI | CCSGG | 1 cut(s) | 1645 |
| BsaBI | GATNNNNATC | 1 cut(s) | 735 |
| BsaHI | GRCGYC | 1 cut(s) | 113 |
| BsaI | GGTCTC | 1 cut(s) | 809 |
| BsaJI | CCNNGG | 4 cut(s) | 921, 1575, 1765, 2457 |
| BsaWI | WCCGGW | 2 cut(s) | 541, 1233 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 433, 463, 585, 615 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1440, 1475, 2155, 2228 |
| Bse118I | RCCGGY | 3 cut(s) | 541, 1233, 1391 |
| Bse1I | ACTGG | 3 cut(s) | 1082, 2042, 2820 |
| Bse3DI | GCAATG | 1 cut(s) | 2625 |
| Bse8I | GATNNNNATC | 1 cut(s) | 735 |
| BseBI | CCWGG | 7 cut(s) | 922, 1326, 1470, 1576, 1744, 1872, 2150 |
| BseDI | CCNNGG | 4 cut(s) | 921, 1575, 1765, 2457 |
| BseJI | GATNNNNATC | 1 cut(s) | 735 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1440, 1475, 2155, 2228 |
| BseMI | GCAATG | 1 cut(s) | 2625 |
| BseMII | CTCAG | 5 cut(s) | 555, 884, 1169, 1986, 2363 |
| BseNI | ACTGG | 3 cut(s) | 1082, 2042, 2820 |
| BseRI | GAGGAG | 3 cut(s) | 420, 1545, 1598 |
| BseSI | GKGCMC | 1 cut(s) | 920 |
| BseX3I | CGGCCG | 1 cut(s) | 477 |
| BseXI | GCAGC | 5 cut(s) | 1673, 2422, 2514, 2704, 2722 |
| BseYI | CCCAGC | 2 cut(s) | 2630, 2731 |
| BsgI | GTGCAG | 2 cut(s) | 884, 1380 |
| Bsh1285I | CGRYCG | 1 cut(s) | 480 |
| BshFI | GGCC | 6 cut(s) | 479, 705, 1540, 1692, 2032, 2047 |
| BshNI | GGYRCC | 1 cut(s) | 112 |
| BshTI | ACCGGT | 2 cut(s) | 541, 1233 |
| BsiEI | CGRYCG | 1 cut(s) | 480 |
| BsiHKAI | GWGCWC | 1 cut(s) | 920 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2574 |
| BsiSI | CCGG | 4 cut(s) | 542, 1234, 1392, 1644 |
| BsiWI | CGTACG | 1 cut(s) | 2260 |
| BslFI | GGGAC | 4 cut(s) | 552, 1328, 2348, 2604 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1440, 1475, 2155, 2228 |
| BsmAI | GTCTC | 4 cut(s) | 257, 402, 809, 2105 |
| BsmFI | GGGAC | 4 cut(s) | 552, 1328, 2348, 2604 |
| BsmI | GAATGC | 1 cut(s) | 149 |
| BsnI | GGCC | 6 cut(s) | 479, 705, 1540, 1692, 2032, 2047 |
| Bso31I | GGTCTC | 1 cut(s) | 809 |
| BsoBI | CYCGRG | 1 cut(s) | 2574 |
| Bsp1286I | GDGCHC | 1 cut(s) | 920 |
| Bsp1407I | TGTACA | 1 cut(s) | 2007 |
| Bsp143I | GATC | 6 cut(s) | 712, 1148, 1202, 2040, 2080, 2440 |
| BspACI | CCGC | 2 cut(s) | 572, 1067 |
| BspANI | GGCC | 6 cut(s) | 479, 705, 1540, 1692, 2032, 2047 |
| BspCNI | CTCAG | 5 cut(s) | 556, 885, 1168, 1985, 2362 |
| BspHI | TCATGA | 1 cut(s) | 1261 |
| BspLI | GGNNCC | 5 cut(s) | 114, 540, 1185, 2336, 2546 |
| BspMAI | CTGCAG | 2 cut(s) | 746, 2740 |
| BspMI | ACCTGC | 2 cut(s) | 389, 1352 |
| BspPI | GGATC | 2 cut(s) | 2048, 2435 |
| BspT107I | GGYRCC | 1 cut(s) | 112 |
| BspTNI | GGTCTC | 1 cut(s) | 809 |
| BsrDI | GCAATG | 1 cut(s) | 2625 |
| BsrFI | RCCGGY | 3 cut(s) | 541, 1233, 1391 |
| BsrGI | TGTACA | 1 cut(s) | 2007 |
| BsrI | ACTGG | 3 cut(s) | 1082, 2042, 2820 |
| BssAI | RCCGGY | 3 cut(s) | 541, 1233, 1391 |
| BssECI | CCNNGG | 4 cut(s) | 921, 1575, 1765, 2457 |
| BssMI | GATC | 6 cut(s) | 712, 1148, 1202, 2040, 2080, 2440 |
| BssNI | GRCGYC | 1 cut(s) | 113 |
| BssT1I | CCWWGG | 2 cut(s) | 1765, 2457 |
| Bst2UI | CCWGG | 7 cut(s) | 922, 1326, 1470, 1576, 1744, 1872, 2150 |
| Bst4CI | ACNGT | 5 cut(s) | 329, 671, 684, 1309, 2657 |
| Bst6I | CTCTTC | 7 cut(s) | 387, 520, 1044, 1575, 2367, 2637, 2757 |
| BstACI | GRCGYC | 1 cut(s) | 113 |
| BstAUI | TGTACA | 1 cut(s) | 2007 |
| BstC8I | GCNNGC | 6 cut(s) | 17, 826, 1359, 1538, 1694, 2565 |
| BstDEI | CTNAG | 7 cut(s) | 564, 893, 1155, 1839, 1972, 2267, 2349 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1473, 2153 |
| BstH2I | RGCGCY | 3 cut(s) | 116, 1699, 2416 |
| BstHHI | GCGC | 4 cut(s) | 115, 1698, 1807, 2415 |
| BstKTI | GATC | 6 cut(s) | 715, 1151, 1205, 2043, 2083, 2443 |
| BstMAI | GTCTC | 4 cut(s) | 257, 402, 809, 2105 |
| BstMBI | GATC | 6 cut(s) | 712, 1148, 1202, 2040, 2080, 2440 |
| BstMCI | CGRYCG | 1 cut(s) | 480 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 898, 1835, 2741 |
| BstNI | CCWGG | 7 cut(s) | 922, 1326, 1470, 1576, 1744, 1872, 2150 |
| BstNSI | RCATGY | 2 cut(s) | 1466, 2055 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1496 |
| BstSCI | CCNGG | 8 cut(s) | 920, 1324, 1468, 1574, 1643, 1742, 1870, 2148 |
| BstSFI | CTRYAG | 4 cut(s) | 21, 303, 742, 2736 |
| BstSLI | GKGCMC | 1 cut(s) | 920 |
| BstV1I | GCAGC | 5 cut(s) | 1673, 2422, 2514, 2704, 2722 |
| BstV2I | GAAGAC | 3 cut(s) | 1233, 1427, 1487 |
| BstX2I | RGATCY | 1 cut(s) | 1148 |
| BstYI | RGATCY | 1 cut(s) | 1148 |
| BstZI | CGGCCG | 1 cut(s) | 477 |
| BsuI | GTATCC | 2 cut(s) | 1356, 2179 |
| BsuRI | GGCC | 6 cut(s) | 479, 705, 1540, 1692, 2032, 2047 |
| BtrI | CACGTC | 1 cut(s) | 1487 |
| BtsI | GCAGTG | 3 cut(s) | 247, 739, 2062 |
| BtsIMutI | CAGTG | 4 cut(s) | 247, 334, 739, 2062 |
| BveI | ACCTGC | 2 cut(s) | 389, 1352 |
| Cac8I | GCNNGC | 6 cut(s) | 17, 826, 1359, 1538, 1694, 2565 |
| CciI | TCATGA | 1 cut(s) | 1261 |
| CfoI | GCGC | 4 cut(s) | 115, 1698, 1807, 2415 |
| Cfr10I | RCCGGY | 3 cut(s) | 541, 1233, 1391 |
| Cfr13I | GGNCC | 2 cut(s) | 539, 2335 |
| Csp6I | GTAC | 6 cut(s) | 270, 472, 672, 1560, 2008, 2261 |
| CspAI | ACCGGT | 2 cut(s) | 541, 1233 |
| CviQI | GTAC | 6 cut(s) | 270, 472, 672, 1560, 2008, 2261 |
| DdeI | CTNAG | 7 cut(s) | 564, 893, 1155, 1839, 1972, 2267, 2349 |
| DinI | GGCGCC | 1 cut(s) | 114 |
| DpnI | GATC | 6 cut(s) | 714, 1150, 1204, 2042, 2082, 2442 |
| DpnII | GATC | 6 cut(s) | 712, 1148, 1202, 2040, 2080, 2440 |
| DraI | TTTAAA | 4 cut(s) | 1126, 1591, 2095, 2343 |
| DraIII | CACNNNGTG | 1 cut(s) | 469 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1234, 1270 |
| EaeI | YGGCCR | 2 cut(s) | 477, 703 |
| EagI | CGGCCG | 1 cut(s) | 477 |
| Eam1104I | CTCTTC | 7 cut(s) | 387, 520, 1044, 1575, 2367, 2637, 2757 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1234, 1270 |
| EarI | CTCTTC | 7 cut(s) | 387, 520, 1044, 1575, 2367, 2637, 2757 |
| EclXI | CGGCCG | 1 cut(s) | 477 |
| Eco130I | CCWWGG | 2 cut(s) | 1765, 2457 |
| Eco31I | GGTCTC | 1 cut(s) | 809 |
| Eco47I | GGWCC | 2 cut(s) | 539, 2335 |
| Eco52I | CGGCCG | 1 cut(s) | 477 |
| Eco57I | CTGAAG | 3 cut(s) | 501, 1490, 2385 |
| Eco88I | CYCGRG | 1 cut(s) | 2574 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1473, 2153 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2335 |
| EcoRI | GAATTC | 2 cut(s) | 775, 1398 |
| EcoRII | CCWGG | 7 cut(s) | 920, 1324, 1468, 1574, 1742, 1870, 2148 |
| EcoT14I | CCWWGG | 2 cut(s) | 1765, 2457 |
| EcoT22I | ATGCAT | 2 cut(s) | 149, 1454 |
| EgeI | GGCGCC | 1 cut(s) | 114 |
| EheI | GGCGCC | 1 cut(s) | 114 |
| ErhI | CCWWGG | 2 cut(s) | 1765, 2457 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 499, 531, 682, 714, 2364, 2396 |
| FaqI | GGGAC | 4 cut(s) | 552, 1328, 2348, 2604 |
| FauNDI | CATATG | 1 cut(s) | 1923 |
| FbaI | TGATCA | 1 cut(s) | 712 |
| FblI | GTMKAC | 2 cut(s) | 686, 2187 |
| Fnu4HI | GCNGC | 6 cut(s) | 1067, 1662, 2411, 2528, 2718, 2736 |
| Fsp4HI | GCNGC | 6 cut(s) | 1067, 1662, 2411, 2528, 2718, 2736 |
| FspBI | CTAG | 6 cut(s) | 27, 939, 956, 1112, 1176, 1835 |
| FspI | TGCGCA | 1 cut(s) | 1806 |
| GlaI | GCGC | 4 cut(s) | 114, 1697, 1806, 2414 |
| GluI | GCNGC | 6 cut(s) | 1067, 1662, 2411, 2528, 2718, 2736 |
| GsaI | CCCAGC | 2 cut(s) | 2634, 2735 |
| GsuI | CTGGAG | 2 cut(s) | 1836, 2171 |
| HaeII | RGCGCY | 3 cut(s) | 116, 1699, 2416 |
| HaeIII | GGCC | 6 cut(s) | 479, 705, 1540, 1692, 2032, 2047 |
| HapII | CCGG | 4 cut(s) | 542, 1234, 1392, 1644 |
| HhaI | GCGC | 4 cut(s) | 115, 1698, 1807, 2415 |
| Hin1I | GRCGYC | 1 cut(s) | 113 |
| Hin6I | GCGC | 4 cut(s) | 113, 1696, 1805, 2413 |
| HinP1I | GCGC | 4 cut(s) | 113, 1696, 1805, 2413 |
| HincII | GTYRAC | 1 cut(s) | 2188 |
| HindII | GTYRAC | 1 cut(s) | 2188 |
| HindIII | AAGCTT | 2 cut(s) | 899, 1827 |
| HpaII | CCGG | 4 cut(s) | 542, 1234, 1392, 1644 |
| HphI | GGTGA | 3 cut(s) | 335, 1073, 1564 |
| Hpy166II | GTNNAC | 6 cut(s) | 58, 472, 687, 918, 2060, 2188 |
| Hpy188III | TCNNGA | 7 cut(s) | 1262, 1406, 1669, 1815, 1974, 2222, 2574 |
| Hpy8I | GTNNAC | 6 cut(s) | 58, 472, 687, 918, 2060, 2188 |
| HpyCH4III | ACNGT | 5 cut(s) | 329, 671, 684, 1309, 2657 |
| HpyCH4IV | ACGT | 2 cut(s) | 1486, 1960 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 898, 1835, 2741 |
| HpyF3I | CTNAG | 7 cut(s) | 564, 893, 1155, 1839, 1972, 2267, 2349 |
| HpySE526I | ACGT | 2 cut(s) | 1486, 1960 |
| Hsp92I | GRCGYC | 1 cut(s) | 113 |
| HspAI | GCGC | 4 cut(s) | 113, 1696, 1805, 2413 |
| KasI | GGCGCC | 1 cut(s) | 112 |
| Ksp22I | TGATCA | 1 cut(s) | 712 |
| Kzo9I | GATC | 6 cut(s) | 712, 1148, 1202, 2040, 2080, 2440 |
| LmnI | GCTCC | 5 cut(s) | 993, 1189, 1558, 2393, 2510 |
| Lsp1109I | GCAGC | 5 cut(s) | 1673, 2422, 2514, 2704, 2722 |
| LweI | GCATC | 9 cut(s) | 519, 559, 772, 881, 925, 1439, 1770, 2263, 2683 |
| MaeI | CTAG | 6 cut(s) | 27, 939, 956, 1112, 1176, 1835 |
| MaeII | ACGT | 2 cut(s) | 1486, 1960 |
| MaeIII | GTNAC | 6 cut(s) | 323, 678, 803, 1775, 2486, 2536 |
| MalI | GATC | 6 cut(s) | 714, 1150, 1204, 2042, 2082, 2442 |
| MboI | GATC | 6 cut(s) | 712, 1148, 1202, 2040, 2080, 2440 |
| MfeI | CAATTG | 1 cut(s) | 655 |
| MflI | RGATCY | 1 cut(s) | 1148 |
| MhlI | GDGCHC | 1 cut(s) | 920 |
| MlsI | TGGCCA | 1 cut(s) | 705 |
| MluNI | TGGCCA | 1 cut(s) | 705 |
| Mly113I | GGCGCC | 1 cut(s) | 113 |
| MlyI | GAGTC | 5 cut(s) | 404, 1166, 1259, 1390, 1927 |
| MmeI | TCCRAC | 1 cut(s) | 2488 |
| Mox20I | TGGCCA | 1 cut(s) | 705 |
| Mph1103I | ATGCAT | 2 cut(s) | 149, 1454 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2289, 2376, 2432 |
| MscI | TGGCCA | 1 cut(s) | 705 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1293, 1299, 1356 |
| Msp20I | TGGCCA | 1 cut(s) | 705 |
| MspA1I | CMGCKG | 2 cut(s) | 296, 2735 |
| MspI | CCGG | 4 cut(s) | 542, 1234, 1392, 1644 |
| MspR9I | CCNGG | 8 cut(s) | 922, 1326, 1470, 1576, 1645, 1744, 1872, 2150 |
| MunI | CAATTG | 1 cut(s) | 655 |
| Mva1269I | GAATGC | 1 cut(s) | 149 |
| MvaI | CCWGG | 7 cut(s) | 922, 1326, 1470, 1576, 1744, 1872, 2150 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 898, 1835, 2741 |
| NarI | GGCGCC | 1 cut(s) | 113 |
| NciI | CCSGG | 1 cut(s) | 1645 |
| NdeI | CATATG | 1 cut(s) | 1923 |
| NdeII | GATC | 6 cut(s) | 712, 1148, 1202, 2040, 2080, 2440 |
| NlaIV | GGNNCC | 5 cut(s) | 114, 540, 1185, 2336, 2546 |
| NmeAIII | GCCGAG | 2 cut(s) | 89, 455 |
| NmuCI | GTSAC | 3 cut(s) | 323, 678, 803 |
| NsbI | TGCGCA | 1 cut(s) | 1806 |
| NsiI | ATGCAT | 2 cut(s) | 149, 1454 |
| NspI | RCATGY | 2 cut(s) | 1466, 2055 |
| PagI | TCATGA | 1 cut(s) | 1261 |
| PaqCI | CACCTGC | 1 cut(s) | 389 |
| PctI | GAATGC | 1 cut(s) | 149 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2289, 2376, 2432 |
| PfeI | GAWTC | 6 cut(s) | 182, 299, 434, 962, 2225, 2377 |
| Pfl23II | CGTACG | 1 cut(s) | 2260 |
| PfoI | TCCNGGA | 2 cut(s) | 1643, 1742 |
| PinAI | ACCGGT | 2 cut(s) | 541, 1233 |
| PkrI | GCNGC | 6 cut(s) | 1068, 1663, 2412, 2529, 2719, 2737 |
| PleI | GAGTC | 5 cut(s) | 404, 1166, 1259, 1389, 1926 |
| PluTI | GGCGCC | 1 cut(s) | 116 |
| PpsI | GAGTC | 5 cut(s) | 404, 1166, 1259, 1389, 1926 |
| PpuMI | RGGWCCY | 1 cut(s) | 2335 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1496 |
| PshBI | ATTAAT | 1 cut(s) | 2313 |
| PsiI | TTATAA | 2 cut(s) | 972, 1547 |
| Psp5II | RGGWCCY | 1 cut(s) | 2335 |
| Psp6I | CCWGG | 7 cut(s) | 920, 1324, 1468, 1574, 1742, 1870, 2148 |
| PspFI | CCCAGC | 2 cut(s) | 2630, 2731 |
| PspGI | CCWGG | 7 cut(s) | 920, 1324, 1468, 1574, 1742, 1870, 2148 |
| PspLI | CGTACG | 1 cut(s) | 2260 |
| PspN4I | GGNNCC | 5 cut(s) | 114, 540, 1185, 2336, 2546 |
| PspPI | GGNCC | 2 cut(s) | 539, 2335 |
| PspPPI | RGGWCCY | 1 cut(s) | 2335 |
| PstI | CTGCAG | 2 cut(s) | 746, 2740 |
| PsuI | RGATCY | 1 cut(s) | 1148 |
| PvuII | CAGCTG | 2 cut(s) | 296, 2735 |
| RsaI | GTAC | 6 cut(s) | 271, 473, 673, 1561, 2009, 2262 |
| RsaNI | GTAC | 6 cut(s) | 270, 472, 672, 1560, 2008, 2261 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1293, 1299, 1356 |
| SalI | GTCGAC | 1 cut(s) | 2186 |
| SatI | GCNGC | 6 cut(s) | 1067, 1662, 2411, 2528, 2718, 2736 |
| Sau3AI | GATC | 6 cut(s) | 712, 1148, 1202, 2040, 2080, 2440 |
| Sau96I | GGNCC | 2 cut(s) | 539, 2335 |
| SchI | GAGTC | 5 cut(s) | 404, 1166, 1259, 1390, 1927 |
| ScrFI | CCNGG | 8 cut(s) | 922, 1326, 1470, 1576, 1645, 1744, 1872, 2150 |
| SduI | GDGCHC | 1 cut(s) | 920 |
| SfaNI | GCATC | 9 cut(s) | 519, 559, 772, 881, 925, 1439, 1770, 2263, 2683 |
| SfcI | CTRYAG | 4 cut(s) | 21, 303, 742, 2736 |
| SfoI | GGCGCC | 1 cut(s) | 114 |
| SinI | GGWCC | 2 cut(s) | 539, 2335 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1293, 1299, 1356 |
| SmlI | CTYRAG | 2 cut(s) | 1667, 2786 |
| SmoI | CTYRAG | 2 cut(s) | 1667, 2786 |
| SsiI | CCGC | 2 cut(s) | 572, 1067 |
| SspDI | GGCGCC | 1 cut(s) | 112 |
| SspI | AATATT | 1 cut(s) | 1855 |
| SspMI | CTAG | 6 cut(s) | 27, 939, 956, 1112, 1176, 1835 |
| StyD4I | CCNGG | 8 cut(s) | 920, 1324, 1468, 1574, 1643, 1742, 1870, 2148 |
| StyI | CCWWGG | 2 cut(s) | 1765, 2457 |
| TaaI | ACNGT | 5 cut(s) | 329, 671, 684, 1309, 2657 |
| TaiI | ACGT | 2 cut(s) | 1489, 1963 |
| TaqI | TCGA | 5 cut(s) | 180, 965, 1605, 1906, 2187 |
| TaqII | GACCGA | 1 cut(s) | 666 |
| TatI | WGTACW | 3 cut(s) | 269, 471, 2007 |
| TauI | GCSGC | 1 cut(s) | 1069 |
| TfiI | GAWTC | 6 cut(s) | 182, 299, 434, 962, 2225, 2377 |
| TscAI | CASTG | 4 cut(s) | 247, 334, 746, 2062 |
| TseFI | GTSAC | 3 cut(s) | 323, 678, 803 |
| TseI | GCWGC | 5 cut(s) | 1661, 2410, 2527, 2717, 2735 |
| Tsp45I | GTSAC | 3 cut(s) | 323, 678, 803 |
| TspGWI | ACGGA | 1 cut(s) | 1032 |
| TspRI | CASTG | 4 cut(s) | 247, 334, 746, 2062 |
| VneI | GTGCAC | 1 cut(s) | 916 |
| VpaK11BI | GGWCC | 2 cut(s) | 539, 2335 |
| VspI | ATTAAT | 1 cut(s) | 2313 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1473, 2153 |
| XapI | RAATTY | 6 cut(s) | 775, 951, 1136, 1370, 1398, 2500 |
| XceI | RCATGY | 2 cut(s) | 1466, 2055 |
| XmiI | GTMKAC | 2 cut(s) | 686, 2187 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2289, 2376, 2432 |
| XspI | CTAG | 6 cut(s) | 27, 939, 956, 1112, 1176, 1835 |
| Zsp2I | ATGCAT | 2 cut(s) | 149, 1454 |