SNF2 domain-containing protein CLASSY
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 3148, 3446, 3969 |
| AccB1I | GGYRCC | 1 cut(s) | 3599 |
| AccIII | TCCGGA | 1 cut(s) | 2068 |
| AciI | CCGC | 5 cut(s) | 278, 1382, 3403, 3530, 4364 |
| AclI | AACGTT | 1 cut(s) | 61 |
| AclWI | GGATC | 4 cut(s) | 2532, 2692, 3932, 4058 |
| AcoI | YGGCCR | 2 cut(s) | 1029, 1212 |
| AcsI | RAATTY | 6 cut(s) | 1811, 2747, 2775, 2893, 3248, 3480 |
| AcuI | CTGAAG | 6 cut(s) | 1911, 2388, 2612, 2697, 3122, 3786 |
| AdeI | CACNNNGTG | 1 cut(s) | 2688 |
| AfaI | GTAC | 7 cut(s) | 1924, 2547, 2723, 2888, 2935, 3361, 4149 |
| AfeI | AGCGCT | 1 cut(s) | 3773 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 165, 2521, 2707, 2849, 3529, 3630, 3851, 4177, 4363 |
| AgeI | ACCGGT | 1 cut(s) | 2607 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2608 |
| AjnI | CCWGG | 8 cut(s) | 129, 565, 2229, 2701, 2842, 3107, 3253, 3805 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 1083, 1115, 1209, 1241, 1266, 1293, 1298, 1325 |
| Alw21I | GWGCWC | 2 cut(s) | 1658, 3390 |
| Alw26I | GTCTC | 2 cut(s) | 920, 2042 |
| AlwI | GGATC | 4 cut(s) | 2532, 2692, 3932, 4058 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1934, 2315 |
| Ama87I | CYCGRG | 3 cut(s) | 917, 3623, 4197 |
| Aor13HI | TCCGGA | 1 cut(s) | 2068 |
| Aor51HI | AGCGCT | 1 cut(s) | 3773 |
| AoxI | GGCC | 9 cut(s) | 11, 513, 1029, 1212, 1854, 2912, 3413, 3475, 3520 |
| ApeKI | GCWGC | 4 cut(s) | 780, 1747, 3035, 4399 |
| ApoI | RAATTY | 6 cut(s) | 1811, 2747, 2775, 2893, 3248, 3480 |
| AseI | ATTAAT | 3 cut(s) | 942, 1170, 2022 |
| AsiGI | ACCGGT | 1 cut(s) | 2607 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1719, 3240, 3707 |
| AspLEI | GCGC | 2 cut(s) | 3345, 3774 |
| AspS9I | GGNCC | 5 cut(s) | 123, 2913, 3423, 3475, 3958 |
| AsuC2I | CCSGG | 2 cut(s) | 3624, 3625 |
| AsuII | TTCGAA | 3 cut(s) | 1112, 1295, 4328 |
| AsuNHI | GCTAGC | 1 cut(s) | 3823 |
| AvaI | CYCGRG | 3 cut(s) | 917, 3623, 4197 |
| AvaII | GGWCC | 3 cut(s) | 123, 3423, 3958 |
| BaeGI | GKGCMC | 1 cut(s) | 3282 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 867, 900, 2488, 2521 |
| BanI | GGYRCC | 1 cut(s) | 3599 |
| BanII | GRGCYC | 2 cut(s) | 3172, 3390 |
| BauI | CACGAG | 1 cut(s) | 1657 |
| BbsI | GAAGAC | 3 cut(s) | 2043, 2607, 2861 |
| Bbv12I | GWGCWC | 2 cut(s) | 1658, 3390 |
| BbvI | GCAGC | 4 cut(s) | 792, 1759, 3047, 4411 |
| BceAI | ACGGC | 2 cut(s) | 500, 1450 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3269, 3303 |
| BciT130I | CCWGG | 8 cut(s) | 131, 567, 2231, 2703, 2844, 3109, 3255, 3807 |
| BciVI | GTATCC | 3 cut(s) | 1884, 2489, 3813 |
| BclI | TGATCA | 1 cut(s) | 193 |
| BcnI | CCSGG | 2 cut(s) | 3624, 3625 |
| BcoDI | GTCTC | 2 cut(s) | 920, 2042 |
| BfaI | CTAG | 4 cut(s) | 165, 1518, 2327, 3824 |
| BfmI | CTRYAG | 2 cut(s) | 1686, 3650 |
| BfoI | RGCGCY | 1 cut(s) | 3775 |
| BfuAI | ACCTGC | 3 cut(s) | 3148, 3446, 3969 |
| BfuI | GTATCC | 3 cut(s) | 1884, 2489, 3813 |
| BisI | GCNGC | 4 cut(s) | 781, 1748, 3036, 4400 |
| BlsI | GCNGC | 4 cut(s) | 782, 1749, 3037, 4401 |
| Bme18I | GGWCC | 3 cut(s) | 123, 3423, 3958 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2608 |
| BmeT110I | CYCGRG | 3 cut(s) | 917, 3623, 4197 |
| BmgT120I | GGNCC | 5 cut(s) | 123, 2913, 3423, 3475, 3958 |
| BmiI | GGNNCC | 7 cut(s) | 2073, 2380, 2915, 3169, 3601, 3959, 4169 |
| BmrI | ACTGGG | 6 cut(s) | 1053, 1382, 1566, 2859, 3027, 3823 |
| BmsI | GCATC | 6 cut(s) | 1861, 2813, 3135, 4015, 4306, 4333 |
| BmtI | GCTAGC | 1 cut(s) | 3827 |
| BmuI | ACTGGG | 6 cut(s) | 1053, 1382, 1566, 2859, 3027, 3823 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3300 |
| BpiI | GAAGAC | 3 cut(s) | 2043, 2607, 2861 |
| BpmI | CTGGAG | 1 cut(s) | 361 |
| Bpu14I | TTCGAA | 3 cut(s) | 1112, 1295, 4328 |
| BpuEI | CTTGAG | 2 cut(s) | 222, 4397 |
| BpuMI | CCSGG | 2 cut(s) | 3624, 3625 |
| Bsa29I | ATCGAT | 1 cut(s) | 987 |
| BsaAI | YACGTR | 1 cut(s) | 2933 |
| BsaJI | CCNNGG | 7 cut(s) | 566, 2229, 2701, 3108, 3442, 3552, 3623 |
| BsaWI | WCCGGW | 3 cut(s) | 2068, 2423, 2607 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 165, 2521, 2707, 2849, 3529, 3630, 3851, 4177, 4363 |
| Bse118I | RCCGGY | 2 cut(s) | 2607, 4281 |
| Bse3DI | GCAATG | 5 cut(s) | 2149, 3298, 3470, 3514, 4092 |
| BseAI | TCCGGA | 1 cut(s) | 2068 |
| BseBI | CCWGG | 8 cut(s) | 131, 567, 2231, 2703, 2844, 3109, 3255, 3807 |
| BseCI | ATCGAT | 1 cut(s) | 987 |
| BseDI | CCNNGG | 7 cut(s) | 566, 2229, 2701, 3108, 3442, 3552, 3623 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 165, 2521, 2707, 2849, 3529, 3630, 3851, 4177, 4363 |
| BseMI | GCAATG | 5 cut(s) | 2149, 3298, 3470, 3514, 4092 |
| BseMII | CTCAG | 5 cut(s) | 1752, 2307, 2453, 3651, 3986 |
| BseSI | GKGCMC | 1 cut(s) | 3282 |
| BseXI | GCAGC | 4 cut(s) | 792, 1759, 3047, 4411 |
| BseYI | CCCAGC | 2 cut(s) | 3512, 4253 |
| BsgI | GTGCAG | 3 cut(s) | 1985, 2280, 4418 |
| BshFI | GGCC | 9 cut(s) | 13, 515, 1031, 1214, 1856, 2914, 3415, 3477, 3522 |
| BshNI | GGYRCC | 1 cut(s) | 3599 |
| BshTI | ACCGGT | 1 cut(s) | 2607 |
| BshVI | ATCGAT | 1 cut(s) | 987 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1658, 3390 |
| BsiHKCI | CYCGRG | 3 cut(s) | 917, 3623, 4197 |
| BsiSI | CCGG | 5 cut(s) | 2069, 2424, 2608, 3624, 4282 |
| BslFI | GGGAC | 4 cut(s) | 1573, 2705, 3971, 4227 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 165, 2521, 2707, 2849, 3529, 3630, 3851, 4177, 4363 |
| BsmAI | GTCTC | 2 cut(s) | 920, 2042 |
| BsmFI | GGGAC | 4 cut(s) | 1573, 2705, 3971, 4227 |
| BsmI | GAATGC | 5 cut(s) | 748, 856, 1616, 1840, 3319 |
| BsnI | GGCC | 9 cut(s) | 13, 515, 1031, 1214, 1856, 2914, 3415, 3477, 3522 |
| BsoBI | CYCGRG | 3 cut(s) | 917, 3623, 4197 |
| Bsp119I | TTCGAA | 3 cut(s) | 1112, 1295, 4328 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1658, 3172, 3282, 3390 |
| Bsp13I | TCCGGA | 1 cut(s) | 2068 |
| BspACI | CCGC | 5 cut(s) | 278, 1382, 3403, 3530, 4364 |
| BspANI | GGCC | 9 cut(s) | 13, 515, 1031, 1214, 1856, 2914, 3415, 3477, 3522 |
| BspCNI | CTCAG | 5 cut(s) | 1753, 2308, 2452, 3650, 3985 |
| BspDI | ATCGAT | 1 cut(s) | 987 |
| BspEI | TCCGGA | 1 cut(s) | 2068 |
| BspHI | TCATGA | 6 cut(s) | 763, 871, 979, 1162, 1345, 3784 |
| BspLI | GGNNCC | 7 cut(s) | 2073, 2380, 2915, 3169, 3601, 3959, 4169 |
| BspMI | ACCTGC | 3 cut(s) | 3148, 3446, 3969 |
| BspOI | GCTAGC | 1 cut(s) | 3827 |
| BspPI | GGATC | 4 cut(s) | 2532, 2692, 3932, 4058 |
| BspQI | GCTCTTC | 1 cut(s) | 3762 |
| BspT104I | TTCGAA | 3 cut(s) | 1112, 1295, 4328 |
| BspT107I | GGYRCC | 1 cut(s) | 3599 |
| BsrDI | GCAATG | 5 cut(s) | 2149, 3298, 3470, 3514, 4092 |
| BsrFI | RCCGGY | 2 cut(s) | 2607, 4281 |
| BssAI | RCCGGY | 2 cut(s) | 2607, 4281 |
| BssECI | CCNNGG | 7 cut(s) | 566, 2229, 2701, 3108, 3442, 3552, 3623 |
| BssSI | CACGAG | 1 cut(s) | 1657 |
| BssT1I | CCWWGG | 2 cut(s) | 3442, 3552 |
| Bst2BI | CACGAG | 1 cut(s) | 1657 |
| Bst2UI | CCWGG | 8 cut(s) | 131, 567, 2231, 2703, 2844, 3109, 3255, 3807 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3869 |
| BstBAI | YACGTR | 1 cut(s) | 2933 |
| BstBI | TTCGAA | 3 cut(s) | 1112, 1295, 4328 |
| BstC8I | GCNNGC | 8 cut(s) | 1975, 2838, 2912, 3040, 3549, 3825, 4188, 4283 |
| BstDEI | CTNAG | 8 cut(s) | 1743, 1761, 1851, 2316, 2439, 2764, 3637, 3972 |
| BstEII | GGTNACC | 1 cut(s) | 1680 |
| BstH2I | RGCGCY | 1 cut(s) | 3775 |
| BstHHI | GCGC | 2 cut(s) | 3345, 3774 |
| BstMAI | GTCTC | 2 cut(s) | 920, 2042 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1700, 3495, 3504, 3616, 3869, 4091 |
| BstNI | CCWGG | 8 cut(s) | 131, 567, 2231, 2703, 2844, 3109, 3255, 3807 |
| BstNSI | RCATGY | 2 cut(s) | 2840, 3590 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3300 |
| BstPI | GGTNACC | 1 cut(s) | 1680 |
| BstSFI | CTRYAG | 2 cut(s) | 1686, 3650 |
| BstSLI | GKGCMC | 1 cut(s) | 3282 |
| BstV1I | GCAGC | 4 cut(s) | 792, 1759, 3047, 4411 |
| BstV2I | GAAGAC | 3 cut(s) | 2043, 2607, 2861 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3813 |
| Bsu15I | ATCGAT | 1 cut(s) | 987 |
| BsuI | GTATCC | 3 cut(s) | 1884, 2489, 3813 |
| BsuRI | GGCC | 9 cut(s) | 13, 515, 1031, 1214, 1856, 2914, 3415, 3477, 3522 |
| BsuTUI | ATCGAT | 1 cut(s) | 987 |
| BtsI | GCAGTG | 1 cut(s) | 1444 |
| BveI | ACCTGC | 3 cut(s) | 3148, 3446, 3969 |
| Cac8I | GCNNGC | 8 cut(s) | 1975, 2838, 2912, 3040, 3549, 3825, 4188, 4283 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1934, 2315 |
| CciI | TCATGA | 6 cut(s) | 763, 871, 979, 1162, 1345, 3784 |
| CfoI | GCGC | 2 cut(s) | 3345, 3774 |
| Cfr10I | RCCGGY | 2 cut(s) | 2607, 4281 |
| Cfr13I | GGNCC | 5 cut(s) | 123, 2913, 3423, 3475, 3958 |
| Cfr9I | CCCGGG | 1 cut(s) | 3623 |
| ClaI | ATCGAT | 1 cut(s) | 987 |
| CseI | GACGC | 1 cut(s) | 1921 |
| Csp6I | GTAC | 7 cut(s) | 1923, 2546, 2722, 2887, 2934, 3360, 4148 |
| CspAI | ACCGGT | 1 cut(s) | 2607 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 310, 345 |
| CviQI | GTAC | 7 cut(s) | 1923, 2546, 2722, 2887, 2934, 3360, 4148 |
| DdeI | CTNAG | 8 cut(s) | 1743, 1761, 1851, 2316, 2439, 2764, 3637, 3972 |
| DraI | TTTAAA | 1 cut(s) | 3324 |
| DraIII | CACNNNGTG | 1 cut(s) | 2688 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2608 |
| EaeI | YGGCCR | 2 cut(s) | 1029, 1212 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2608 |
| Ecl136II | GAGCTC | 1 cut(s) | 3388 |
| Eco130I | CCWWGG | 2 cut(s) | 3442, 3552 |
| Eco147I | AGGCCT | 1 cut(s) | 13 |
| Eco24I | GRGCYC | 2 cut(s) | 3172, 3390 |
| Eco32I | GATATC | 1 cut(s) | 985 |
| Eco47I | GGWCC | 3 cut(s) | 123, 3423, 3958 |
| Eco47III | AGCGCT | 1 cut(s) | 3773 |
| Eco53kI | GAGCTC | 1 cut(s) | 3388 |
| Eco57I | CTGAAG | 6 cut(s) | 1911, 2388, 2612, 2697, 3122, 3786 |
| Eco88I | CYCGRG | 3 cut(s) | 917, 3623, 4197 |
| Eco91I | GGTNACC | 1 cut(s) | 1680 |
| EcoICRI | GAGCTC | 1 cut(s) | 3388 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2913, 3958 |
| EcoO65I | GGTNACC | 1 cut(s) | 1680 |
| EcoRI | GAATTC | 1 cut(s) | 2775 |
| EcoRII | CCWGG | 8 cut(s) | 129, 565, 2229, 2701, 2842, 3107, 3253, 3805 |
| EcoRV | GATATC | 1 cut(s) | 985 |
| EcoT14I | CCWWGG | 2 cut(s) | 3442, 3552 |
| EcoT22I | ATGCAT | 1 cut(s) | 2828 |
| EcoT38I | GRGCYC | 2 cut(s) | 3172, 3390 |
| ErhI | CCWWGG | 2 cut(s) | 3442, 3552 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3603, 3635 |
| FaqI | GGGAC | 4 cut(s) | 1573, 2705, 3971, 4227 |
| FauI | CCCGC | 1 cut(s) | 1375 |
| FauNDI | CATATG | 4 cut(s) | 1825, 2053, 2445, 2501 |
| FbaI | TGATCA | 1 cut(s) | 193 |
| Fnu4HI | GCNGC | 4 cut(s) | 781, 1748, 3036, 4400 |
| FriOI | GRGCYC | 2 cut(s) | 3172, 3390 |
| Fsp4HI | GCNGC | 4 cut(s) | 781, 1748, 3036, 4400 |
| FspBI | CTAG | 4 cut(s) | 165, 1518, 2327, 3824 |
| GlaI | GCGC | 2 cut(s) | 3344, 3773 |
| GluI | GCNGC | 4 cut(s) | 781, 1748, 3036, 4400 |
| GsaI | CCCAGC | 2 cut(s) | 3516, 4257 |
| GsuI | CTGGAG | 1 cut(s) | 361 |
| HaeII | RGCGCY | 1 cut(s) | 3775 |
| HaeIII | GGCC | 9 cut(s) | 13, 515, 1031, 1214, 1856, 2914, 3415, 3477, 3522 |
| HapII | CCGG | 5 cut(s) | 2069, 2424, 2608, 3624, 4282 |
| HgaI | GACGC | 1 cut(s) | 1921 |
| HhaI | GCGC | 2 cut(s) | 3345, 3774 |
| Hin6I | GCGC | 2 cut(s) | 3343, 3772 |
| HinP1I | GCGC | 2 cut(s) | 3343, 3772 |
| HindIII | AAGCTT | 1 cut(s) | 3617 |
| HpaII | CCGG | 5 cut(s) | 2069, 2424, 2608, 3624, 4282 |
| Hpy166II | GTNNAC | 3 cut(s) | 579, 1955, 3592 |
| Hpy8I | GTNNAC | 3 cut(s) | 579, 1955, 3592 |
| HpyCH4IV | ACGT | 3 cut(s) | 61, 1570, 2932 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1700, 3495, 3504, 3616, 3869, 4091 |
| HpyF3I | CTNAG | 8 cut(s) | 1743, 1761, 1851, 2316, 2439, 2764, 3637, 3972 |
| HpySE526I | ACGT | 3 cut(s) | 61, 1570, 2932 |
| HspAI | GCGC | 2 cut(s) | 3343, 3772 |
| Kpn2I | TCCGGA | 1 cut(s) | 2068 |
| KroI | GCCGGC | 1 cut(s) | 4281 |
| KroNI | GCCGGC | 1 cut(s) | 4283 |
| Ksp22I | TGATCA | 1 cut(s) | 193 |
| LguI | GCTCTTC | 1 cut(s) | 3762 |
| LmnI | GCTCC | 8 cut(s) | 2101, 2245, 2563, 2932, 3167, 3385, 3446, 4133 |
| Lsp1109I | GCAGC | 4 cut(s) | 792, 1759, 3047, 4411 |
| LweI | GCATC | 6 cut(s) | 1861, 2813, 3135, 4015, 4306, 4333 |
| MaeI | CTAG | 4 cut(s) | 165, 1518, 2327, 3824 |
| MaeII | ACGT | 3 cut(s) | 61, 1570, 2932 |
| MhlI | GDGCHC | 4 cut(s) | 1658, 3172, 3282, 3390 |
| MlyI | GAGTC | 8 cut(s) | 103, 164, 584, 1508, 2405, 2851, 3310, 3864 |
| MmeI | TCCRAC | 4 cut(s) | 150, 1546, 4091, 4111 |
| Mph1103I | ATGCAT | 1 cut(s) | 2828 |
| MroI | TCCGGA | 1 cut(s) | 2068 |
| MroNI | GCCGGC | 1 cut(s) | 4281 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1719, 3240, 3707 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2733 |
| MspI | CCGG | 5 cut(s) | 2069, 2424, 2608, 3624, 4282 |
| Mva1269I | GAATGC | 5 cut(s) | 748, 856, 1616, 1840, 3319 |
| MvaI | CCWGG | 8 cut(s) | 131, 567, 2231, 2703, 2844, 3109, 3255, 3807 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1700, 3495, 3504, 3616, 3869, 4091 |
| NaeI | GCCGGC | 1 cut(s) | 4283 |
| NciI | CCSGG | 2 cut(s) | 3624, 3625 |
| NdeI | CATATG | 4 cut(s) | 1825, 2053, 2445, 2501 |
| NgoMIV | GCCGGC | 1 cut(s) | 4281 |
| NheI | GCTAGC | 1 cut(s) | 3823 |
| NlaIV | GGNNCC | 7 cut(s) | 2073, 2380, 2915, 3169, 3601, 3959, 4169 |
| NmeAIII | GCCGAG | 1 cut(s) | 3670 |
| NmuCI | GTSAC | 5 cut(s) | 545, 1909, 3302, 3794, 3809 |
| NsiI | ATGCAT | 1 cut(s) | 2828 |
| NspI | RCATGY | 2 cut(s) | 2840, 3590 |
| NspV | TTCGAA | 3 cut(s) | 1112, 1295, 4328 |
| PaeI | GCATGC | 1 cut(s) | 2840 |
| PagI | TCATGA | 6 cut(s) | 763, 871, 979, 1162, 1345, 3784 |
| PceI | AGGCCT | 1 cut(s) | 13 |
| PciSI | GCTCTTC | 1 cut(s) | 3762 |
| PctI | GAATGC | 5 cut(s) | 748, 856, 1616, 1840, 3319 |
| PdiI | GCCGGC | 1 cut(s) | 4283 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1719, 3240, 3707 |
| PinAI | ACCGGT | 1 cut(s) | 2607 |
| PkrI | GCNGC | 4 cut(s) | 782, 1749, 3037, 4401 |
| PleI | GAGTC | 8 cut(s) | 102, 163, 583, 1507, 2405, 2851, 3309, 3863 |
| PpsI | GAGTC | 8 cut(s) | 102, 163, 583, 1507, 2405, 2851, 3309, 3863 |
| Ppu21I | YACGTR | 1 cut(s) | 2933 |
| PpuMI | RGGWCCY | 1 cut(s) | 3958 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3300 |
| PshBI | ATTAAT | 3 cut(s) | 942, 1170, 2022 |
| Psp124BI | GAGCTC | 1 cut(s) | 3390 |
| Psp1406I | AACGTT | 1 cut(s) | 61 |
| Psp5II | RGGWCCY | 1 cut(s) | 3958 |
| Psp6I | CCWGG | 8 cut(s) | 129, 565, 2229, 2701, 2842, 3107, 3253, 3805 |
| PspEI | GGTNACC | 1 cut(s) | 1680 |
| PspFI | CCCAGC | 2 cut(s) | 3512, 4253 |
| PspGI | CCWGG | 8 cut(s) | 129, 565, 2229, 2701, 2842, 3107, 3253, 3805 |
| PspN4I | GGNNCC | 7 cut(s) | 2073, 2380, 2915, 3169, 3601, 3959, 4169 |
| PspPI | GGNCC | 5 cut(s) | 123, 2913, 3423, 3475, 3958 |
| PspPPI | RGGWCCY | 1 cut(s) | 3958 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1934, 2315 |
| RsaI | GTAC | 7 cut(s) | 1924, 2547, 2723, 2888, 2935, 3361, 4149 |
| RsaNI | GTAC | 7 cut(s) | 1923, 2546, 2722, 2887, 2934, 3360, 4148 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2733 |
| SacI | GAGCTC | 1 cut(s) | 3390 |
| SapI | GCTCTTC | 1 cut(s) | 3762 |
| SatI | GCNGC | 4 cut(s) | 781, 1748, 3036, 4400 |
| Sau96I | GGNCC | 5 cut(s) | 123, 2913, 3423, 3475, 3958 |
| SchI | GAGTC | 8 cut(s) | 103, 164, 584, 1508, 2405, 2851, 3310, 3864 |
| SduI | GDGCHC | 4 cut(s) | 1658, 3172, 3282, 3390 |
| SfaNI | GCATC | 6 cut(s) | 1861, 2813, 3135, 4015, 4306, 4333 |
| SfcI | CTRYAG | 2 cut(s) | 1686, 3650 |
| SfuI | TTCGAA | 3 cut(s) | 1112, 1295, 4328 |
| SinI | GGWCC | 3 cut(s) | 123, 3423, 3958 |
| SmaI | CCCGGG | 1 cut(s) | 3625 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2733 |
| SmlI | CTYRAG | 2 cut(s) | 237, 4412 |
| SmoI | CTYRAG | 2 cut(s) | 237, 4412 |
| SphI | GCATGC | 1 cut(s) | 2840 |
| SseBI | AGGCCT | 1 cut(s) | 13 |
| SsiI | CCGC | 5 cut(s) | 278, 1382, 3403, 3530, 4364 |
| SspMI | CTAG | 4 cut(s) | 165, 1518, 2327, 3824 |
| SstI | GAGCTC | 1 cut(s) | 3390 |
| StuI | AGGCCT | 1 cut(s) | 13 |
| StyI | CCWWGG | 2 cut(s) | 3442, 3552 |
| TaiI | ACGT | 3 cut(s) | 64, 1573, 2935 |
| TatI | WGTACW | 1 cut(s) | 4147 |
| TseFI | GTSAC | 5 cut(s) | 545, 1909, 3302, 3794, 3809 |
| TseI | GCWGC | 4 cut(s) | 780, 1747, 3035, 4399 |
| Tsp45I | GTSAC | 5 cut(s) | 545, 1909, 3302, 3794, 3809 |
| TspGWI | ACGGA | 2 cut(s) | 948, 1687 |
| TspMI | CCCGGG | 1 cut(s) | 3623 |
| VpaK11BI | GGWCC | 3 cut(s) | 123, 3423, 3958 |
| VspI | ATTAAT | 3 cut(s) | 942, 1170, 2022 |
| XapI | RAATTY | 6 cut(s) | 1811, 2747, 2775, 2893, 3248, 3480 |
| XceI | RCATGY | 2 cut(s) | 2840, 3590 |
| XmaI | CCCGGG | 1 cut(s) | 3623 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1719, 3240, 3707 |
| XspI | CTAG | 4 cut(s) | 165, 1518, 2327, 3824 |
| Zsp2I | ATGCAT | 1 cut(s) | 2828 |